Package blockmatrix. February 19, 2015
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1 Package blockmatrix February 19, 2015 aintainer License GPL (>= 2) Title blockmatrix: Tools to solve algebraic systems with partitioned matrices Type Package Author Some elementary matrix algebra tools are implemented to manage block matrices or partitioned matrix, i.e. ``matrix of matrices'' ( The block matrix is here defined as a new S3 object. In this package, some methods for ``matrix'' object are rewritten for ``blockmatrix'' object. New methods are implemented. This package was created to solve equation systems with block matrices for the analysis of environmental vector time series. Bugs/comments/questions/collaboration of any kind are warmly welcomed. Version 1.0 Repository CRAN Date Depends R (>= 2.13) URL Dynamics-in-the-agro-ecosystems/people/Emanuele-Cordano Collate 'as.blockmatrix.matrix.r' 'as.matrix.blockmatrix.r' 'blockmatrix.r' 'dim.blockmatrix.r' 'is.zero.blockmatrix.r' 'length.blockmatrix.r' 'matmult.blockmatrix.r' 'methods.blockmatrix.r' 'names.blockmatrix.r' 'ncol.blockmatrix.r' 'ncol_elements.blockmatrix.r' 'nrow.blockmatrix.r' 'nrow_elements.blockmatrix.r' 'solve.blockmatrix.r' 't.blockmatrix.r' 'value.blockmatrix.r' 'value.replacement.blockmatrix.r' 'zbracket[.blockmatrix.r' 'zbracket[.replacement.blockmatrix.r' NeedsCompilation no Date/Publication :10:34 1
2 2 as.blockmatrix R topics documented: as.blockmatrix as.matrix.blockmatrix blockmatmult blockmatrix dim.blockmatrix is.zero.blockmatrix length.blockmatrix ath.blockmatrix names.blockmatrix ncol.blockmatrix ncol_elements nrow.blockmatrix nrow_elements solve.blockmatrix t.blockmatrix value value< [.blockmatrix [<-.blockmatrix Index 16 as.blockmatrix as.blockmatrix S3 method for blockmatrix, matrix and NULL object as.blockmatrix S3 method for blockmatrix, matrix and NULL object as.blockmatrix( = NULL,...) ## Default S3 method: as.blockmatrix(, adjust_zero = TRUE, zero_element = "0",...) as.blockmatrix(, adjust_zero = TRUE, add_zero_matrix = FALSE, zero_element = "0",...) ## S3 method for class matrix as.blockmatrix(, nrowe = 2, ncole = 2, nrow = NULL, ncol = NULL, adjust_zero = TRUE, zero_element = "0",...)
3 as.matrix.blockmatrix 3 nrowe ncole nrow ncol adjust_zero a matrix or blockmatrix object number of rows for each block (element of the blockmatrix) number of columns for each block (element of the blockmatrix) number of rows for block-matrix number of columns of blockmatrix logical value. If TRUE (Default) it replaces the zero matrices with zero_element. add_zero_matrix logical value. If TRUE it adds a zero-element element matrix as an object called zero_element in the blockmatrix zero_element... further arguments see ncol_elements or nrow_elements as.matrix.blockmatrix as.matrix S3 method for blockmatrix object as.matrix S3 method for blockmatrix object as.matrix(x, zero_element = "0",...) x zero_element (see ncol_elements or nrow_elements)... further arguments (see ncol_elements or nrow_elements)
4 4 blockmatrix blockmatmult blockmatmult implements the implents betwwen two blockmatrix ( see matmult for matrx objects) blockmatmult implements the implents betwwen two blockmatrix ( see matmult for matrx objects) blockmatmult(x, y,...) x,y blockmatrix objects... further arguments The inner product between x and y as blockmatrix This function builds a blockmatrix This function builds a blockmatrix blockmatrix(dim, value = NULL, names = NULL, list = NULL, use.as.blockmatrix = TRUE, adjust_zero = TRUE, add_zero_matrix = FALSE, zero_element = "0",...)
5 blockmatrix 5 dim value names list dimension of a block-matrix matrix containing the indices (names) of blockmatrix element. If missing, it is NULL (Default). (sse value charcarcter vector containing the names for each matrix-type element of the block-matrix list containing the matrices to be inserted into the block-matrix. If NULL (Default) the matrix are faken from... use.as.blockmatrix logical value. If TRUE (Default) the method as.blockmatrix for blockmatrix object is applied to the output blockmatrix before being returned. adjust_zero,add_zero_matrix,zero_element arguments passed to as.blockmatrix... elements of the block-matrix. See Also as.blockmatrix Examples rm(list=ls()) library(blockmatrix) A <- array(rnorm(9,mean=1),c(3,3)) B <- 0 #array(rnorm(9,mean=2),c(3,3)) C <- 0 D <- array(rnorm(9,mean=4),c(3,3)) F <- array(rnorm(9,mean=10),c(3,3)) <- blockmatrix(names=c("a","0","d","0"),a=a,d=d,dim=c(2,2)) E <- blockmatrix(names=c("0","f","d","0"),f=f,d=d,dim=c(2,2)) R <- +E S <- solve(r) P <- blockmatmult(r,e) l <- list(a=a,b=b,c=c,d=d,f=f) mv <- array(c("a","b","c","d","f","f"),c(3,2)) BB <- blockmatrix(value=mv,list=l)
6 6 is.zero.blockmatrix dim.blockmatrix dim S3 method for blockmatrix object dim S3 method for blockmatrix object dim(x) x is.zero.blockmatrix is.zero.bolockmatrix is.zero.bolockmatrix is.zero.blockmatrix(, not.a.blockmatrix = FALSE) not.a.blockmatrix value to be returned in case is not a logical value in case is a zero blockmatrix
7 length.blockmatrix 7 length.blockmatrix length S3 method for blockmatrix object length S3 method for blockmatrix object length(x) x ath.blockmatrix ath and Ops group of S3 methods for blockmatrix object ath and Ops group of S3 methods for blockmatrix object ath(x, as.blockmatrix = TRUE,...) Ops(e1, e2) x,e1,e2 blockmatrix objects as.blockmatrix logical value. If TRUE (Default), the output is... further arguments
8 8 ncol.blockmatrix names.blockmatrix names S3 method for blockmatrix object names S3 method for blockmatrix object names(x) x ncol.blockmatrix ncol S3 method for blockmatrix object ncol S3 method for blockmatrix object ncol() Numbner of columns of blockmatrix
9 ncol_elements 9 ncol_elements ncol_elements S3 method for blockmatrix object ncol_elements S3 method for blockmatrix object ncol_elements(, zero_element = "0",...) ## Default S3 method: ncol_elements(, zero_element = "0",...) ncol_elements(, zero_element = "0",...) zero_element character value indicating a zero matrix. Default is "0"... further arguments The number of columns of a matrix-type element of. It is NA if the elements has different number of columns. nrow.blockmatrix nrow S3 method for blockmatrix object nrow S3 method for blockmatrix object nrow()
10 10 nrow_elements Number of rows of blockmatrix nrow_elements nrow_elements S3 method for blockmatrix object nrow_elements S3 method for blockmatrix object nrow_elements(, zero_element = "0",...) ## Default S3 method: nrow_elements(, zero_element = "0",...) nrow_elements(, zero_element = "0",...) zero_element character value indicating a zero matrix. Default is "0"... further arguments The number of rows of a matrix-type element of. It is NA if the elements has different number of rows.
11 solve.blockmatrix 11 solve.blockmatrix solve dim S3 solve for blockmatrix object solve(a, b = NULL, as.blockmatrix = TRUE,...) a a blockmatrix or numeric object b a blockmatrix or numeric object. If omitted, it is NULL. See Details. as.blockmatrix logical value. If TRUE (Default), the output is... further arguments for method solve the object x such that a * x = b where * is the matrix product. Note If b is missing, i.e. NULL, it will be replaced by the corresponding identity matrix. So x is calculated as the right inverse of a. The matrix system must be nonsingular and nonhomogeneous. t.blockmatrix t transpose S3 method for blockmatrix object t transpose S3 method for blockmatrix object t(x)
12 12 value x value value S3 method for blockmatrix object value S3 method for blockmatrix object value() ## Default S3 method: value() value() The character matrix without numerical values (e.g. only the matrix $value)
13 value<- 13 value<- value<- S3 Replacement method for blockmatrix object value<- S3 Replacement method for blockmatrix object value() <- value ## Default S3 replacement method: value() <- value ## S3 replacement method for class blockmatrix value() <- value value object replaced matrix Replaces $value with a new matrix value [.blockmatrix [ S3 method for blockmatrix object [ S3 method for blockmatrix object [i = 1:nrow(), j = 1:ncol(),numeric_value=TRUE,blockmatrix=FALSE,...]
14 14 [<-.blockmatrix i,j numeric_value blockmatrix matrix indices (numerical or character) logical value. If TRUE (Default if i,j have both length 1) and i,j have both length 1, a i,j numeric matrix is returened. logical value. If TRUE (Default if i or j have length greater than 1) a blockmatrix is returned.... further argument for [ method The i,j matrix as a numarical matrix if blockmatrix is FALSE, otherwise the returen oblect is a blockmatrix object. In case i is a character vector, the method returns a list of objects with name containing in i and taken from. [<-.blockmatrix [<- S3 Replacement method for blockmatrix object [<- S3 Replacement method for blockmatrix object ## S3 replacement method for class blockmatrix [i = 1:nrow(), j = 1:ncol()] <- value i,j value matrix indices (numerical or character) to be replaced The "replaced" blockmatrix object. Note In case i is a character vector, the elements whose names is in value is replaced.
15 [<-.blockmatrix 15 Examples rm(list=ls()) library(blockmatrix) A <- array(rnorm(9,mean=1),c(3,3)) B <- 0 #array(rnorm(9,mean=2),c(3,3)) C <- 0 D <- array(rnorm(9,mean=4),c(3,3)) F <- array(rnorm(9,mean=10),c(3,3)) <- blockmatrix(names=c("a","0","d","0"),a=a,d=d,dim=c(2,2)) E <- blockmatrix(names=c("0","f","d","0"),f=f,d=d,dim=c(2,2)) E[,1] <- [,1]
16 Index [, 14 [ ([.blockmatrix), 13 [.blockmatrix, 13 [<-,extract_replacemethod ([<-.blockmatrix), 14 [<-.blockmatrix, 14 t (t.blockmatrix), 11 t.blockmatrix, 11 value, 5, 12 value<-, 13 as.blockmatrix, 2, 5 as.matrix (as.matrix.blockmatrix), 3 as.matrix.blockmatrix, 3 blockmatmult, 4 blockmatrix, 4, 13, 14 dim (dim.blockmatrix), 6 dim.blockmatrix, 6 Extract ([.blockmatrix), 13 is.zero.blockmatrix, 6 length (length.blockmatrix), 7 length.blockmatrix, 7 ath (ath.blockmatrix), 7 ath.blockmatrix, 7 matmult, 4 names (names.blockmatrix), 8 names.blockmatrix, 8 ncol (ncol.blockmatrix), 8 ncol.blockmatrix, 8 ncol_elements, 3, 9 nrow (nrow.blockmatrix), 9 nrow.blockmatrix, 9 nrow_elements, 3, 10 Ops (ath.blockmatrix), 7 solve (solve.blockmatrix), 11 solve.blockmatrix, 11 16
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Package narray. January 28, 2018
Package narray January 28, 2018 Title Subset- And Name-Aware Array Utility Functions Version 0.4.0 Author Michael Schubert Maintainer Michael Schubert Stacking
Package strat. November 23, 2016
Type Package Package strat November 23, 2016 Title An Implementation of the Stratification Index Version 0.1 An implementation of the stratification index proposed by Zhou (2012) .
Package keep. R topics documented: December 16, 2015
Package keep December 16, 2015 Type Package Title Arrays with Better Control over Dimension Dropping Version 1.0 Date 2015-12-11 Author Paavo Jumppanen Maintainer Paavo Jumppanen
Package DSBayes. February 19, 2015
Type Package Title Bayesian subgroup analysis in clinical trials Version 1.1 Date 2013-12-28 Copyright Ravi Varadhan Package DSBayes February 19, 2015 URL http: //www.jhsph.edu/agingandhealth/people/faculty_personal_pages/varadhan.html
Package Mondrian. R topics documented: March 4, Type Package
Type Package Package Mondrian March 4, 2016 Title A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events The unique function of this package allows representing in a single
Package gggenes. R topics documented: November 7, Title Draw Gene Arrow Maps in 'ggplot2' Version 0.3.2
Title Draw Gene Arrow Maps in 'ggplot2' Version 0.3.2 Package gggenes November 7, 2018 Provides a 'ggplot2' geom and helper functions for drawing gene arrow maps. Depends R (>= 3.3.0) Imports grid (>=
Package curry. September 28, 2016
Type Package Package curry September 28, 2016 Title Partial Function Application with %
Package CvM2SL2Test. February 15, 2013
Package CvM2SL2Test February 15, 2013 Version 2.0-1 Date 2012-01-02 Title Cramer-von Mises Two Sample Tests Author Yuanhui Xiao Maintainer Yuanhui Xiao Depends Suggests
Package anfis. February 19, 2015
Package anfis February 19, 2015 Type Package Title Adaptive Neuro Fuzzy Inference System in R Version 0.99.1 Date 2015-01-16 Author Cristobal Fresno, Andrea S. Llera and Elmer A. Fernandez Maintainer Cristobal
Package waver. January 29, 2018
Type Package Title Calculate Fetch and Wave Energy Version 0.2.1 Package waver January 29, 2018 Description Functions for calculating the fetch (length of open water distance along given directions) and
Package CatEncoders. March 8, 2017
Type Package Title Encoders for Categorical Variables Version 0.1.1 Author nl zhang Package CatEncoders Maintainer nl zhang March 8, 2017 Contains some commonly used categorical
Package glinternet. June 15, 2018
Type Package Package glinternet June 15, 2018 Title Learning Interactions via Hierarchical Group-Lasso Regularization Version 1.0.8 Date 2018-06-20 Author Michael Lim, Trevor Hastie Maintainer Michael
Package SPIn. R topics documented: February 19, Type Package
Type Package Package SPIn February 19, 2015 Title Simulation-efficient Shortest Probability Intervals Version 1.1 Date 2013-04-02 Author Ying Liu Maintainer Ying Liu Depends R
Package seg. February 15, 2013
Package seg February 15, 2013 Version 0.2-4 Date 2013-01-21 Title A set of tools for residential segregation research Author Seong-Yun Hong, David O Sullivan Maintainer Seong-Yun Hong
Package hsiccca. February 20, 2015
Package hsiccca February 20, 2015 Type Package Title Canonical Correlation Analysis based on Kernel Independence Measures Version 1.0 Date 2013-03-13 Author Billy Chang Maintainer Billy Chang
Package MmgraphR. R topics documented: September 14, Type Package
Type Package Package MmgraphR September 14, 2018 Title Graphing for Markov, Hidden Markov, and Mixture Transition Distribution Models Version 0.3-1 Date 2018-08-23 Maintainer Pauline Adamopoulou
Package ripa. February 20, 2015
Version 2.0-2 Date 2014-05-29 Title R Image Processing and Analysis Package ripa February 20, 2015 Maintainer Talita Perciano Depends R (>= 2.8.1), tcltk, parallel Suggests e1071,
Package crossword.r. January 19, 2018
Date 2018-01-13 Type Package Title Generating s from Word Lists Version 0.3.5 Author Peter Meissner Package crossword.r January 19, 2018 Maintainer Peter Meissner Generate crosswords