Package ggiraphextra

Transcription

1 Type Package Package ggiraphextra December 3, 2016 Title Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph' Version Maintainer Keon-Woong Moon URL Depends R (>= 2.10) Imports ggplot2 (>= 2.2.0), ggiraph (>= 0.3.2), scales, reshape2, plyr, mycor, XML, grid, mgcv, mapproj, moonbook Suggests TH., maps, gcookbook, knitr, rmarkdown, testthat Collection of functions to enhance 'ggplot2' and 'ggiraph'. Provides functions for exploratory plots. All plot can be a 'static' plot or an '' plot using 'ggiraph'. License GPL-3 Encoding UTF-8 LazyData true RoxygenNote VignetteBuilder knitr NeedsCompilation no Author Keon-Woong Moon [aut, cre] Repository CRAN Date/Publication :11:47 R topics documented: browsers coord_radar ggancova ggbar ggboxplot ggcatepillar

2 2 browsers ggchoropleth ggcle ggcor ggdonut ggdot ggeffect ggerrorbar ggheatmap gghsd ggpair ggpiedonut ggpoints ggradar ggrose ggspine makeeq model2df num2cut num2factordf pastecolon rescale_df rose subcolors summaryse taco theme_clean unselectnumeric Index 27 browsers Browser market share 2011 A phony set measuring browser market share browsers Format A.frame with 12 rows and 3 columns browser browser version browser version share market share, in percentage

3 coord_radar 3 coord_radar The radar coordinate system is a modification of polar coordinate system, commly used for radar chart The radar coordinate system is a modification of polar coordinate system, commly used for radar chart coord_radar(theta = "x", start = 0, direction = 1) theta variable to map angle to (x or y) start offset of starting point from 12 o clock in radians direction 1, clockwise; -1, counterclockwise ggancova Make an plot for an ANCOVA model Make an plot for an ANCOVA model ggancova(x,...) ## Default S3 method: ggancova(x,,...) ## S3 method for class 'formula' ggancova(x,,...) ## S3 method for class 'lm' ggancova(x, label = NULL, digits = 1, = FALSE,...)

4 4 ggbar x an object... additional arguments passed to the generic function label digits Methods (by class) Set of aesthetic s created by aes or aes_. a.frame A character string of column name be assigned to the label An integer indicating the number of decimal places A logical value. If TRUE, an plot will be returned default: Make an plot for an ANCOVA model formula: Make an plot for an ANCOVA model lm: Make an plot for an ANCOVA model require(moonbook) ggancova(radial,aes(age,ntav,color=sex),=true) fit=lm(ntav~age+hbp,=radial) ggancova(fit,=true) ggancova(ntav~age+dm,=radial) ggbar Draw an barplot Draw an barplot ggbar(,, stat = "count", position = "stack", palette = NULL, width = NULL, digits = 1, horizontal = FALSE, yangle = 0, addlabel = FALSE, polar = FALSE, = FALSE,...) stat position A.frame Set of aesthetic s created by aes or aes_. The statistical transformation to use on the for this layer, as a string c("count","identity") Position adjustment. One of the c("fill","stack","dodge")

5 ggboxplot 5 palette width digits horizontal yangle addlabel polar A character string indicating the color palette Bar width integer indicating the number of decimal places A logical value. If TRUE,a horizontal bar plot will be returned A integer. The value will be used adjust the angle of axis.text.y A logical value. If TRUE, label will be added to the plot A logical value. If TRUE, coord_polar() function will be added A logical value. If TRUE, an plot will be returned... other arguments passed on to geom_bar_. An barplot require(moonbook) ggbar(acs,aes(x=dx,fill=smoking),=true,width=1,colour="white",size=0.2,polar=true) ggbar(acs,aes(x=dx,fill=smoking),position="fill",addlabel=true,horizontal=true,width=0.5) ggbar(acs,aes(x=dx,fill=smoking),position="dodge",=true) ggbar(rose,aes(x=month,fill=group,y=value),stat="identity",polar=true,palette="reds",width=1, color="black",size=0.1,=true) ggboxplot Draw boxplots of a.frame Draw boxplots of a.frame ggboxplot(, = NULL, rescale = FALSE, horizontal = FALSE, = FALSE,...) rescale horizontal a.frame Set of aesthetic s created by aes or aes_. if true, rescale the.frame if true, horizontal boxplots will be made A logical value. If TRUE, an plot will be returned... other arguments passed on to geom_boxplot_

6 6 ggcatepillar require(reshape2) ggboxplot(mtcars,rescale=true) ggboxplot(mtcars,aes(x=c(mpg,cyl,disp,hp,drat),color=am),rescale=true) ggboxplot(mtcars,rescale=true,=true) ggboxplot(mtcars,horizontal=true,=true) ggcatepillar Make an catepillar plot Make an catepillar plot ggcatepillar(,, errorbar = "se", = FALSE, digits = 1, flip = FALSE) errorbar digits flip a.frame Set of aesthetic s created by aes or aes_. which value is displayed with errorbar :"se" or "sd" A logical value. If TRUE, an plot will be returned An integer indicating the number of decimal places Logical cvalue. If TRUE, coord_flip() function is used to make a horizontal plot An catepillar plot require(moonbook) ggcatepillar(acs,aes(dx,age,color=hbp),=true) ggcatepillar(acs,aes(c(dx,sex),age,color=hbp),=true,flip=true) ggcatepillar(acs,aes(age,height,color=sex),errorbar=false,=true)

7 ggchoropleth 7 ggchoropleth Draw an choropleth map Draw an choropleth map ggchoropleth(,, map, colors = c("white", "orange", "red"), palette = NULL, title = "", digits = 1, = FALSE,...) map colors palette title digits a.frame Set of aesthetic s created by aes or aes_. Passed on geom_map_. Required s are map_id and fill. Possible is facet. a map maybe a result of map_() A vector of colours used as a parameter of scale_fill_gradientn() A palette name used for discrete fill var A title An integer indicating the number of decimal places Logical. If positive an map will be made... other arguments passed on to geom_map_ #crimes <-.frame(state = tolower(rownames(usarrests)), USArrests) # # #require(maps) #require(mapproj) #states_map <- map_("state") #ggchoropleth(crimes,aes(fill=murder,map_id=state),map=states_map,=true) #ggchoropleth(crimes,aes(fill=c(murder,rape),map_id=state),map=states_map,=true) #ggchoropleth(crimes,aes(map_id=state),map=states_map,=true)

8 8 ggcle ggcle Draw a cleveland dot plot Draw a cleveland dot plot ggcle(,, reorderbyx = TRUE, no = NULL, start = 0.99, = FALSE, decreasing = TRUE,...) reorderbyx no start decreasing a.frame Set of aesthetic s created by aes or aes_. If true, the is reordered by x variable Number of be drawn in plot start point of x axis as ratio to minimum x variable A logical value. If TRUE, an plot will be returned Should the sort order be increasing or decreasing?... other arguments passed on to geom_point_ mtcars$name=rownames(mtcars) ggcle(=mtcars,aes(x=mpg,y=name)) ggcle(=mtcars,aes(x=mpg,y=name,color=am,facet=am),=true) if(requirenamespace("gcookbook",quietly=true)){ require(gcookbook) ggcle(=tophitters2001,aes(x=avg,y=name),no=20,=true) ggcle(=tophitters2001,aes(x=avg,y=name,color=lg,facet=lg),no=20) }

9 ggcor 9 ggcor Draw a heatmap of correlation test Draw a heatmap of correlation test ggcor(, label = 0, colors = NULL, title = FALSE, = FALSE,...) label colors title A.frame if 0, no label(default), if 1, use r value as label, if 2, use r value with significant mark as label colors for low, mid and high correlation values if true, add title to the heatmap A logical value. If TRUE, an plot will be returned... further arguments to be passed to cor.test require(mycor) ggcor(iris) ggcor(iris,label=2,=true) ggcor(mtcars,=true) ggcor(iris,method="pearson",=true) ggdonut Draw a Donut plot Draw a Donut plot ggdonut(,, adddonutlabel = TRUE, showratio = TRUE, polar = TRUE, labelposition = 1, title = "", = FALSE)

10 10 ggdot adddonutlabel showratio polar labelposition title A.frame Set of aesthetic s created by aes or aes_. A logical value. If TRUE, labels are added to the Donuts A logical value. If TRUE, Ratios are added to the DonutLabels A logical value. If TRUE, coord_polar() function will be added A number indicating the label position Plot title A logical value. If TRUE, an plot will be returned An Pie and Donut plot require(plyr) ggdonut(browsers,aes(donuts=version,count=share)) ggdot Draw a Wilkinson dot plot Draw a Wilkinson dot plot ggdot(,, stackdir = "center", binaxis = "y", binwidth = 0.5, method = "dotdensity", position = 0.2, boxwidth = 0.25, boxfill = NULL,...) stackdir binaxis binwidth a.frame Set of aesthetic s created by aes or aes_. which direction to stack the dots. "up" (default), "down", "center", "centerwhole" (centered, but with dots aligned) The axis to bin along, "x" (default) or "y" When method is "dotdensity", this specifies maximum bin width. When method is "histodot", this specifies bin width. Defaults to 1/30 of the range of the

11 ggeffect 11 method position boxwidth boxfill "dotdensity" (default) for dot-density binning, or "histodot" for fixed bin widths (like stat_bin) Position adjustment. If 0, no adjustment. The width of boxplot Fill color of boxplot... other arguments passed on to geom_dotplot if(requirenamespace("gcookbook",quietly=true)){ # for heightweight require(gcookbook) ggdot(heightweight,aes(sex,heightin,fill=sex),boxfill="white",binwidth=0.4) ggdot(heightweight,aes(heightin)) ggdot(heightweight,aes(x=heightin,fill=sex)) } require(moonbook) #for use radial ggdot(radial,aes(x=sex,y=height,fill=sex),boxfill="white",position=0,binwidth=1,boxwidth=1) ggdot(radial,aes(x=height,fill=sex),binwidth=1) ggeffect Visualize the effect of interaction between two continuous independent variables on a response variable Visualize the effect of interaction between two continuous independent variables on a response variable ggeffect(x,...) ## Default S3 method: ggeffect(x,,...) ## S3 method for class 'formula' ggeffect(x,,...) ## S3 method for class 'lm' ggeffect(x, no = 1, probs = c(0.1, 0.5, 0.9), point = TRUE, xvalue = NULL, digits = 2, use.rownames = FALSE, = FALSE,...)

12 12 ggeffect x Object to ggeffect... additional arguments passed to the generic function no probs point xvalue digits use.rownames Set of aesthetic s created by aes or aes_. A.frame an integer A vector of probability weights for obtaining the elements of the vector being sampled.default value is c(0.10,0.5,0.90) A logical value. If TRUE, draw points A numeric vector An integer indicating the number of decimal places If TRUE, use rownames in label A logical value. If TRUE, an plot will be returned An plot showing interaction Methods (by class) default: Visualize the effect of interaction between two continuous independent variables on a response variable formula: Visualize the effect of interaction between two continuous independent variables on a response variable lm: Visualize the effect of interaction between two continuous independent variables on a response variable ggeffect(mtcars,aes(x=wt,y=mpg,color=hp),use.rownames=true,=true) require(moonbook) ggeffect(ntav~age*smoking,=radial,=true) fit=lm(age~sex*smoking,=acs) ggeffect(fit,=true)

13 ggerrorbar 13 ggerrorbar Make an bar plot with error bar Make an bar plot with error bar ggerrorbar(,, = FALSE, digits = 1, mode = 2, errorbar = "se") digits mode errorbar A.frame Set of aesthetic s created by aes or aes_. A logical value. If TRUE, an plot will be returned An integer indicating the number of decimal places if 2, two-sided error bar will be displayed, if 1 one-sided errorbar will be displayed which value is displayed with errorbar :"se" or "sd" An catepillar plot ggerrorbar(mpg,aes(x=drv,y=cty),=true) ggerrorbar(mpg,aes(x=drv,y=hwy,color=cyl),mode=1,=true,errorbar="sd") ggheatmap Make an Heatmap Make an Heatmap ggheatmap(,, stat = "count", gradient_colors = c("white", "steelblue"), addlabel = FALSE, polar = FALSE, = FALSE, yangle = 0, color = "black", size = 0.1,...)

14 14 gghsd A.frame Set of aesthetic s created by aes or aes_. stat The statistical transformation to use on the for this layer, as a string c("count","identity") gradient_colors A voector of color names used in function scale_fill_gradientn(). Default value is c("white","steelblue") addlabel polar yangle color size A logical value. If TRUE, label will be added to the plot A logical value. If TRUE, coord_polar() function will be added A logical value. If TRUE, an plot will be returned A integer. The value will be used adjust the angle of axis.text.y Color argument passed on to geom_bar_. Size argument passed on to geom_bar_.... other arguments passed on to geom_bar_. An barplot require(moonbook) ggheatmap(acs,aes(x=dx,y=smoking),addlabel=true) ggheatmap(rose,aes(x=month,y=group,fill=value),stat="identity",gradient_colors = c("white","red")) ggheatmap(taco,aes(x=agegroup,y=filling,fill=rating,facet=shelltype),stat="identity") gghsd Draw Tukey Honest Significant Differences plot Draw Tukey Honest Significant Differences plot gghsd(tukey, no = 1, digits = 2, = FALSE) tukey no digits A object of class "TukeyHSD", the result of TukeyHSD() An integer specify the order of list integer indicating the number of decimal places A logical value. If TRUE, an plot will be returned

15 ggpair 15 A () ggplot fm1 <- aov(breaks ~ wool + tension, = warpbreaks) result=tukeyhsd(fm1, "tension", ordered = TRUE) str(result) gghsd(result) ggpair Make an scatter and line plot Make an scatter and line plot ggpair(, = NULL, idcolor = TRUE, horizontal = FALSE, = FALSE) idcolor horizontal a.frame Set of aesthetic s created by aes or aes_. Logical cvalue. If TRUE, row numbers uses as a color variable Logical cvalue. If TRUE, coord_flip() function is used to make a horizontal plot Logical cvalue. If TRUE, an plot using ggiraph() function will be returned ggpair(iris,=true) ggpair(iris[3:5],=true) ggpair(iris,aes(color=species),=true) ggpair(iris,aes(color=species),horizontal=true, =TRUE) ggpair(iris,aes(x=c(sepal.length,sepal.width)),=true) ggpair(iris,aes(x=c(sepal.length,sepal.width),color=species),=true)

16 16 ggpiedonut ggpiedonut Draw a Pie and Donut plot Draw a Pie and Donut plot ggpiedonut(,, addpielabel = TRUE, adddonutlabel = TRUE, showratiodonut = TRUE, showratiopie = TRUE, showratiopieabove10 = TRUE, title = "", labelposition = 1, polar = TRUE, = FALSE) addpielabel adddonutlabel A.frame Set of aesthetic s created by aes or aes_. A logical value. If TRUE, labels are added to the Pies A logical value. If TRUE, labels are added to the Donuts showratiodonut A logical value. If TRUE, Ratios are added to the DonutLabels showratiopie A logical value. If TRUE, Ratios are added to the PieLabels showratiopieabove10 A logical value. If TRUE, labels are added to the Pies with ratio above 10. title labelposition polar Plot title A number indicating the label position A logical value. If TRUE, coord_polar() function will be added A logical value. If TRUE, an plot will be returned An Pie and Donut plot require(plyr) require(moonbook) ggpiedonut(acs,aes(pies=dx,donuts=smoking)) ggpiedonut(browsers,aes(pies=browser,donuts=version,count=share)) ggpiedonut(browsers,aes(x=c(browser,version),y=share),=true)

17 ggpoints 17 ggpoints Make an scatterplot with regression line(s) Make an scatterplot with regression line(s) ggpoints(,, smooth = TRUE, se = TRUE, method = "auto", formula = y ~ x, fullrange = FALSE, level = 0.95, maxfactorno = 6, digits = 2, title = NULL, subtitle = NULL, caption = NULL, tooltip = NULL, = FALSE,...) smooth se method formula fullrange level maxfactorno digits title subtitle caption tooltip a.frame Set of aesthetic s created by aes or aes_. Logical. Add regression lines to the scatter plot Logical. display confidence interval around linear regression? (TRUE by default) smoothing method (function) to use, eg. "lm", "glm", "gam", "loess", "rlm" formula to use in smoothing function, eg. y ~ x, y ~ poly(x, 2), y ~ log(x) should the fit span the full range of the plot, or just the level of confidence interval to use (0.95 by default) An integer. Maximum unique number of a numeric vector treated as a factor integer indicating the number of decimal places The text for plot title The text for plot subtitle The text for plot caption A character string of column name be included in tooltip. Default value is NULL A logical value. If TRUE, an plot will be returned... other arguments passed on to geom_point require(plyr) ggpoints(aes(x=wt,y=mpg,color=carb),=mtcars,=true,maxfactno=3)

18 18 ggradar ggradar Draw a radar chart Draw a radar chart ggradar(, = NULL, rescale = TRUE, legend.position = "top", colour = "red", alpha = 0.3, size = 3, ylim = NULL, = FALSE,...) rescale A.frame Set of aesthetic s created by aes or aes_. A logical value. If TRUE, all continuous variables in the.frame are rescaled. legend.position Legend position. One of c("top","bottom","left","right","none") colour alpha size ylim A name of color to be assigned as a color variable Any numbers from 0 (transparent) to 1 (opaque) Point size A numeric vector of length 2, giving the y coordinates ranges. A logical value. If TRUE, an plot will be returned... other arguments passed on to geom_point An radar plot require(plyr) require(reshape2) ggradar(=iris,aes(group=species)) ggradar(=mtcars,=true) ggradar(=mtcars,aes(colour=am),=true)

19 ggrose 19 ggrose Draw an Rose plot Draw an Rose plot ggrose(,, palette = "Reds", color = "black", size = 0.1,...) palette color size A.frame Set of aesthetic s created by aes or aes_. A character string indicating the color palette Bar colour Bar size... other arguments passed on to geom_bar_. An Rose plot require(moonbook) require(plyr) ggrose(rose,aes(x=month,fill=group,y=value),=true) ggrose(acs,aes(x=dx,fill=smoking),=true) ggspine Draw an spinogram Draw an spinogram ggspine(,, stat = "count", position = "fill", palette = "Blues", = FALSE, polar = FALSE, width = NULL, digits = 1, colour = "black", size = 0.2, addlabel = FALSE,...)

20 20 makeeq stat position palette polar width digits colour size addlabel A.frame Set of aesthetic s created by aes or aes_. The statistical transformation to use on the for this layer, as a string c("count","identity") Position adjustment. One of the c("fill","stack","dodge") A character string indicating the color palette A logical value. If TRUE, an plot will be returned A logical value. If TRUE, coord_polar() function will be added Bar width integer indicating the number of decimal places Bar colour Bar size A logical value. If TRUE, label will be added to the plot... other arguments passed on to layer. An spinogram require(moonbook) ggspine(=acs,aes(x=age,fill=smoking),=true) ggspine(=acs,aes(x=dx,fill=smoking),addlabel=true,=true) ggspine(=acs,aes(x=dx,fill=smoking),position="dodge",addlabel=true,=true) ggspine(=acs,aes(x=dx,fill=smoking),position="stack",addlabel=true,=true) makeeq Make a regression equation of a model Make a regression equation of a model makeeq(model, digits = 2) model digits A model of class "lm" or"glm" or"loess" integer indicating the number of decimal places

21 model2df 21 model2df Make a.fram of yhat with a model Make a.fram of yhat with a model model2df(model, x = NULL, n = 100) model x n A model of class "lm" or"glm" or"loess" A optional vector of explanatory variable number of observations. num2cut Computing breaks for make a histogram of a continuous variable Computing breaks for make a histogram of a continuous variable num2cut(x) x A continuous variables A list contains a factor and a numeric vector

22 22 pastecolon num2factordf Make numeric column of a.frame to factor Make numeric column of a.frame to factor num2factordf(, colnames, maxfactorno = 6) colnames maxfactorno a.frame Column names to be converted maximun unique value of column pastecolon Paste character vectors separated by colon Paste character vectors separated by colon pastecolon(...)... passed on to paste()

23 rescale_df 23 rescale_df Rescale all numeric variables of a.frame except grouping variable Rescale all numeric variables of a.frame except grouping variable rescale_df(, groupvar = NULL) groupvar A.frame A column name used as a grouping variable A rescaled.frame rose Rose sales among 7 groups in a year A phony set representing rose sales rose Format An object of class.frame with 84 rows and 3 columns. A.frame with 84 rows and 3 columns group group A to G Month Month 1 to 12 value Rose sales amount

24 24 summaryse subcolors Make a subcolors according to the maincol Make a subcolors according to the maincol subcolors(.dta, main, maincol).dta main maincol A.frame A character string of column name used as a main variable A main color summaryse Summarize a continuous variable by groups with mean, sd and SE Summarize a continuous variable by groups with mean, sd and SE summaryse( = NULL, measurevar, groupvars = NULL, conf.interval = 0.95, na.rm = TRUE,.drop = TRUE) measurevar groupvars conf.interval na.rm.drop A.frame A name of variable to measure a mean and sd Name(s) of variable used as a grouping variables confidence interval A logical value indicating whether or not remove NA values should combinations of variables that do not appear in the input be preserved (FALSE) or dropped (TRUE, default) A.frame summarized a continuous variable by groups with mean, sd and SE

25 taco 25 taco Taco ratings by age group Taco ratings by ShellType, AgeGroup and Filling source: Communicating experiment results with R taco Format An object of class.frame with 136 rows and 4 columns. A.frame with 136 rows and 4 columns ShellType Hard or Soft Fillings Fillings of taco AgeGroup AgeGroup One of the c("<13","13-20","21-39","40+",) Rating A numeric. Rating of taco theme_clean Clean theme for PieDonut plot Clean theme for PieDonut plot theme_clean(base_size = 12) base_size An interger, default 12.

26 26 unselectnumeric unselectnumeric Unselect numeric column of a.frame Unselect numeric column of a.frame unselectnumeric(, colnames, maxfactorno = 6) colnames maxfactorno a.frame Column names to be converted maximun unique value of column

27 Index Topic sets browsers, 2 rose, 23 taco, 25 browsers, 2 summaryse, 24 taco, 25 theme_clean, 25 unselectnumeric, 26 coord_radar, 3 ggancova, 3 ggbar, 4 ggboxplot, 5 ggcatepillar, 6 ggchoropleth, 7 ggcle, 8 ggcor, 9 ggdonut, 9 ggdot, 10 ggeffect, 11 ggerrorbar, 13 ggheatmap, 13 gghsd, 14 ggpair, 15 ggpiedonut, 16 ggpoints, 17 ggradar, 18 ggrose, 19 ggspine, 19 makeeq, 20 model2df, 21 num2cut, 21 num2factordf, 22 pastecolon, 22 rescale_df, 23 rose, 23 subcolors, 24 27