Introduction to tuning on many core platforms. Gilles Gouaillardet RIST

Transcription

1 Introduction to tuning on many core platforms Gilles Gouaillardet RIST

2 Agenda Why do we need many core platforms? Single-thread optimization Parallelization Conclusions

3 Why do we need many core platforms?

4 Why many-core platforms? Von Neumann architecture (1945) Moore s law (1965) The number of transistors in a dense integrated circuit double approximately every two years

5 CPU trends past 40 years Sources: AMD

6 The free lunch is over Back in the days, Moore s law meant the processor frequency doubled every two years Memory bandwidth increased too upgrading hardware was enough to increase application performance Processor frequency cannot increase any more (physical, power and thermal constraints) More transistors means more and more capable cores Memory bandwidth and cache size keeps increasing Memory bandwidth and cache size per core tends to decrease

7 The road to exascale Exascale supercomputer using evolved technology would be too expensive too power hungry ( > 100 MW, acceptable is < 20 MW) Disruptive technology is needed FPGA? GPU? Many core?

8 Disruptive technology is needed for exascale Good compromise between absolute performance, performance per Watt, cost and programmability Many core is a popular option, easy programming is an important factor Sunway TaihuLight (RISC - #1 on Top500) KNL (x86_64 - #5 and #6 on Top500) Post K (ARMv8)

9 Challenges More, and more capable but slower cores Good algorithm is critical Parallelism is no more an option Instruction level parallelism (vectorization) Block level parallelism (MPI and/or OpenMP) Hierarchical memory Hyperthreading Code modernization is mandatory

10 Manycore tuning challenges With great computational power comes great algorithmic responsibility David E. Keyes (KAUST)

11 Single-thread optimization

12 Single thread optimization Maximum single thread performance can only be achieved with optimized code that fully exploits all the hardware features : Vectorization (Instruction Level Parallelism) use of all the Floating Points units (FMA) Maximize FLOP vs BYTES

13 Memory and caches Most architecture are based on cachecoherent memory Some exceptions : Cell and TaihuLight only have scratchpad memory a read instruction move a line into L1 cache (unless non temporal stores) Usually write a line to the L1 cache n-ways associative memory Least Recently Used (LRU) policy is common Reuse data as much as possible

14 KNL memory configuration

15 Vectorization Scalar (one instruction produces one result) SIMD processing (one instruction can produce multiple results)

16 When vectorize? Vectorization can be seen as instruction level parallelism Loop carried dependence prevent vectorization #define N 1024 double a[n][n]; for (i=1; i<n; i++) for (j=1; j< n; j++) loop carried on for j loop no loop-carried dependence in for i loop a[i][j] = a[i][j-1] + 1; #define N 1024 double a[n][n]; for (i=1; i<n; i++) for (j=1; j< n; j++) no loop-carried dependence in for j loop loop-carried dependence in for i loop a[i][j] = a[i-1][j] + 1;

17 Compilers are conservative If there might be some dependences, the compiler will not vectorize Compiler generated vectorization report are very valuable Developer knows best, if there is no dependence, then tell the compiler Compiler specific pragma Standard OpenMP 4 simd directive

18 Vectorized loop internals Aligned memory accesses are more efficient A loop is made of 3 phases Peeling (scalar) so aligned access can be used in the main body Main body (vectorized) with only aligned access Remainder (scalar) aligned access but not a full vector Align data and inform the compiler to get rid of loop peeling (directive or compiler option)

19 Vectorized loop internals #define N 1020 double a[n], b[n], c[n]; for (int i=0; i<n; i++) a[i] = b[i] + c[i]; If 512 bits vectors, bump N to 1024 to get rid of the remainder integer, parameter :: N=1020, M=512 double precision :: a(n,m), b(n,m), c(n,m) do j=1,m do i=1,n a(i,j) = b(i,j) + c(i,j) end do end do #define N 1020 double a[n], b[n]; double sum = 0; for (int i=0; i<n; i++) sum += a[i] * b[i]; If 512 bits vectors, bump N to 1024 to get rid of the remainder in the innermost loop If 512 bits vectors, bump N to 1024 and zero a[1020:1023] and b[1020:1023] to get rid of the remainder

20 AoS vs SoA As taught in Object Oriented Programming classes, common data layout is Array of Structure (AoS) #define N 1024 typedef struct { double x; double y; double z; } point; point p[n]; /* x-translation */ for (int i=0; i<n; i++) p[i].x += 1.0; Strided access : 1 cache line contains 2 or 3 useful double out of 8 A vector uses data from 3 cache lines

21 AoS vs SoA Optimized data layout is Structure of Arrays (SoA) #define N 1024 typedef struct { double x[n]; double y[n]; double z[n]; } points; points p; /* x-translation */ for (int i=0; i<n; i++) p.x[i] += 1.0; Streaming access : 1 cache line contains 8 useful double

22 Indirect access #define N 1024 double * a; int * indixes; for (int i=0; i<n; i++) a[indixes[i]]] += 1.0; Data must be gathered/scattered from/to several cache lines Hardware support is available In the general case, vectorization is incorrect!

23 Indirect access and collisions #define N 1024 double * a; int * indixes; for (int i=0; i<n; i++) a[indixes[i]]] += 1.0; If no conflict can occur, then compiler must be informed vectorization is safe Hardware support might be available for collision detection (AVX512-CD)

24 KNL High Bandwidth Memory KNL comes with 16 GB of MCDRAM / High Bandwidth Memory (HBM) Memory mode can be selected at boot time (and ideally on a per-job basis) Flat : NUMA node with 16 GB of HBM and standard memory Cache : only standard memory, HBM is transparently used as a L3 cache Hybrid (one portion is used as cache, the other as scratchpad)

25 KNL flat mode Command line # use only HBM $ numactl m 1 a.out Autohbw library $ export AUTO_HBW_SIZE=min_size[:max_size] $ LD_PRELOAD=libautohbw.so a.out # try HBM first, fallback to standard memory $ numactl preferred=1 a.out Fortran directive Memkind library real(r8), allocatable :: a(:)!dir$ attributes fastmem, align:64 :: a #include <hbwmalloc.h> double * d = hbw_malloc(n*sizeof(double)); allocate(a)

26 Arithmetic intensity Arithmetic intensity is the ratio FLOP per byte moved to/from memory Numerical intensity is based on algorithm, but it can be influenced by dataset

27 Roofline analysis Kernel with low arithmetic intensity are memory-bound Kernel with high arithmetic intensity are compute-bound Roofline analysis is a visual method to find how well the kernel is performing There are several roofs Memory type (L1 / L2 / HBM / standard memory Cpu features (no vectorization, vectorization, vectorization + FMA)

28 Roofline analysis w/ Intel Advisor 2017 Roofline model has to be built once per processor Vendor knows best Process fully automated from Advisor 2017 Update 2

29 False sharing double local_value[num_threads]; #pragma omp parallel { int me = omp_get_thread_num(); local_value[me] = func(me); } typedef struct { double value; double[7] padding; Different data from the same cache line is used on different processors Excessive time is spent ensuring cache coherency Re-organize data so per thread data does not share any cache line (padding) } local_data;

30 n-way associative cache Since cache is not fully associative, all cache might not be used

31 Parallelization

32 Parallelization Free lunch is over, more cores are needed to keep application performances A lot more cores are available and must be effectively used to achieve greater performance Parallelization is now mandatory

33 Performance scaling Strong scaling how the solution time varies with the number of processors for a fixed total problem size? Ideally, adding processors decreases the time to solution. Weak scaling how the solution time varies with the number of processors for a fixed problem size per processor Ideally, the time to solution remains constant.

34 Amdahl s law (strong scaling) S latency is the theoretical speedup of the execution of the whole task; s is the speedup of the part of the task that benefits from improved system resources; p is the proportion of execution time that the part benefiting from improved resources originally occupied.

35 Gustafson s law (weak scaling) S latency is the theoretical speedup in latency of the execution of the whole task; s is the speedup in latency of the execution of the part of the task that benefits from the improvement of the resources of the system; p is the percentage of the execution workload of the whole task concerning the part that benefits from the improvement of the resources of the system before the improvement.

36 At a glance Amdahl s law we are fundamentally limited by the serial fraction Gustafson s law we need larger problems for larger numbers CPUs whilst we are still limited by the serial fraction, it becomes less important

37 Parallelization models MPI is the de facto standard for inter process communication Flat MPI is sometimes a good option, but beware of memory and wire-up overhead MPI+X is the general paradigm X is for intra node communications and can be OpenMP Pthreads PGAS (OpenSHMEM, Co-arrays, ) MPI (!)

38 OpenMP OpenMP is a common parallelization paradigm used on shared memory node OpenMP is a set of directives to enable parallelization #define N 1024 double a[n], b[n], c[n]; for (int i=0; i<n; i++) a[i] = b[i] + c[i]; #define N 1024 double a[n], b[n], c[n]; #pragma omp parallel for for (int i=0; i<n; i++) a[i] = b[i] + c[i];

39 OpenMP limitations Most OpenMP parallelization focus only on loops OpenMP has an overhead (thread creation, synchronization, reduction) OpenMP was designed when memory was flat, today NUMA is very common. NUMA makes performance models hard to build OpenMP is generally best within a NUMA node natural when iterations are independent MPI communications within an OpenMP region is not natural

40 Hyperthreading A KNL core consists of 4 hardware threads Hardware threads share resources (cache, FPU, ) When a hardware thread is waiting for memory, an other hardware thread can be scheduled to perform some computation 2 hardware threads are enough to achieve maximum performances (4 on KNC) Best is to experiment with 1 and 2 threads per core, and choose the fastest option

41 Intel Thread Advisor Suitability report gives a speed-up estimation

42 Intel Thread Advisor Dependency analysis help predicting parallel data sharing problems (very slow, and only on annotated loops)

43 KNL cluster modes KNL cluster mode is selected at boot time (BIOS parameter) KNL modes influence cache coherency wiring and topology presented to the application. Commonly used modes are : Alltoall Quadrant SNC-4 SNC-2 Using the most appropriate mode is critical to achieve optimal performances The best mode depends on application and parallelization model Hopefully, KNL cluster mode can be selected on a per job basis

44 KNL Cluster modes All2all/Quadrant (1 socket, 68 cores) SNC2 (2 sockets, cores) SNC4 (4 sockets, cores)

45 KNL cluster modes Rules of thumb AlltoAll : do not use it! SNC-4: 4 NUMA nodes, generally best with a multiple of 4 MPI tasks per node. Note 34 tiles do not split evenly into 4 quadrants! SNC-2: 2 NUMA nodes, generally best with a multiple of 2 MPI tasks per node Quadrant: flat memory, to be used if SNC-4/2 is not a fit

46 Problem sizing on KNL KNL has both ECC (standard) and MCDRAM (High Bandwidth) memory MCDRAM can be configured as cache or scratchpad Impact of performance can be significant If your app is cache-friendly, weak scale using all available memory If your app is not cache-friendly, it might be more effective to weak scale using only HBM

47 Is your app-cache friendly? In flat mode Run with HBM only Run with standard memory only In cache mode Increase dataset size to use all available memory Measure the drop in performance (if any) when using all the memory in cache mode

48 Conclusions

49 Conclusions Moore s law is yet still valid It used to mean free-lunch It now means more cores and more complex architectures, and that comes with new challenges Vectorization and parallelization are mandatory Tools are available to help We can help you too!

50 Questions? Regarding this presentation Need help with your research