Lecture 12 Programming for automation of common data management tasks

Transcription

1 Lecture 12 Programming for automation of common data management tasks Daniel P. Ames Hydroinformatics Fall 2012 This work was funded by National Science Foundation Grant EPS

2 Goals this Week To learn the basics of Python Scripting for automation of basic geoprocessing and database management tasks. Tuesday focus on intro to Python and ArcPy for mapping and geoprocessing tasks Thursday focus on PyODBC and using Python to automate database tasks

3 Useful Software to have on your laptop computer in class ArcGIS. Python. PyODBC. ArcMap 10.x comes with Python 2.6. It installs it in your C: folder under C:\Python\ArcGIS10\. PyODBC. ads/detail?name=pyodbc win32- py2.6.exe&can=2&q=

4 Slide Credits 2010 Mitch Marcus and Varun Aggarwala, University of Pennsylvania 2010 ESRI Conference Workshop: Python Essentials in ArcGIS-I 2002 LinuxWorld Tutorial: Introduction to Python by Guido van Rossum

5 Python Python is an open source scripting language. Developed by Guido van Rossum in the early 1990s Named after Monty Python Available on eniac Available for download from CIS Intro to NLP 5

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7 Why Python? Powerful but unobtrusive object system Every value is an object Classes guide but do not dominate object construction Powerful collection and iteration abstractions Dynamic typing makes generics easy

8 Python Interpreted language: works with an evaluator for language expressions Dynamically typed: variables do not have a predefined type Rich, built-in collection types: Lists Tuples Dictionaries (maps) Sets Concise

9 Language features Indentation instead of braces Newline separates statements Several sequence types Strings : made of characters, immutable Lists [ ]: made of anything, mutable Tuples ( ) : made of anything, immutable Powerful subscripting (slicing) Functions are independent entities (not all functions are methods) Exceptions

10 Basics

11 Dynamic typing Variables come into existence when first assigned a value A variable can refer to an object of any type

12 Playing with Python (1) >>> >>> 2/3 0 >>> 2.0/ >>> x=4.5 >>> int(x) 4

13 Playing with Python (2) >>> x='abc' >>> x[0] 'a' >>> x[1:3] 'bc' >>> x[:2] 'ab >>> x[1]='d' Traceback (most recent call last): File "<pyshell#14>", line 1, in <module> x[1]='d' TypeError: 'str' object does not support item assignment

14 Playing with Python (3) >>> x=['a','b','c'] >>> x[1] 'b' >>> x[1:] ['b', 'c'] >>> x[1]='d' >>> x ['a', 'd', 'c']

15 Playing with Python (4) >>> def p(x): if len(x) < 2: return True else: return x[0] == x[-1] and p(x[1:-1]) >>> p('abc') False >>> p('aba') True >>> p([1,2,3]) False >>> p([1, a, a,1]) True >>> p((false,2,2,false)) True >>> p(( a,1,1)) False

16 The Python Command Line Interpreter Interactive interface to Python % python Python 2.6 (r26:66714, Feb , 20:49:49) [GCC [gcc-4_3-branch revision ]] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> Python interpreter evaluates inputs: >>> 3*(7+2) 27

17 The IDLE GUI Environment (Windows) Shell for interactive evaluation. Text editor with color-coding and smart indenting for creating Python files. Menu commands for changing system settings and running files. Installed with ArcMap

18 A Code Sample (in IDLE) x = # A comment. y = Hello # Another one. z = 3.45 if z == 3.45 or y == Hello : x = x + 1 y = y + World # String concat. print x print y

19 Enough to Understand the Code Indentation matters to the meaning of the code: Block structure indicated by indentation The first assignment to a variable creates it. Variable types don t need to be declared. Python figures out the variable types on its own. Assignment uses = and comparison uses ==. For numbers + - * / % are as expected. Special use of + for string concatenation. Special use of % for string formatting (as with printf in C) Logical operators are words (and, or, not) not symbols Simple printing can be done with print.

20 Basic Datatypes Integers (default for numbers) z = 5 / 2 Floats # Answer is 2, integer division. x = Strings Can use or to specify. abc abc (Same thing.) Unmatched can occur within the string. matt s Use triple double-quotes for multi-line strings or strings than contain both and inside of them: a b c

21 Whitespace Whitespace is meaningful in Python: especially indentation and placement of newlines. Use a newline to end a line of code. Use \ when must go to next line prematurely. No braces { } to mark blocks of code in Python Use consistent indentation instead. The first line with less indentation is outside of the block. The first line with more indentation starts a nested block Often a colon appears at the start of a new block. (E.g. for function and class definitions.)

22 Comments Start comments with # the rest of line is ignored. Can include a documentation string as the first line of any new function or class that you define. The development environment, debugger, and other tools use it: it s good style to include one. def my_function(x, y): This is the docstring. This function does blah blah blah. # The code would go here...

23 Naming Rules Names are case sensitive and cannot start with a number. They can contain letters, numbers, and underscores. bob Bob _bob _2_bob_ bob_2 BoB There are some reserved words: and, assert, break, class, continue, def, del, elif, else, except, exec, finally, for, from, global, if, import, in, is, lambda, not, or, pass, print, raise, return, try, while

24 The + Operator The + operator produces a new tuple, list, or string whose value is the concatenation of its arguments. >>> (1, 2, 3) + (4, 5, 6) (1, 2, 3, 4, 5, 6) >>> [1, 2, 3] + [4, 5, 6] [1, 2, 3, 4, 5, 6] >>> Hello + + World Hello World

25 Lists >>> li = [ abc, 23, 4.34, 23] >>> li[1] = 45 >>> li [ abc, 45, 4.34, 23] We can change lists in place. Name li still points to the same memory reference when we re done.

26 Operations on Lists Only 1 >>> li = [1, 11, 3, 4, 5] >>> li.append( a ) # Note the method syntax >>> li [1, 11, 3, 4, 5, a ] >>> li.insert(2, i ) >>>li [1, 11, i, 3, 4, 5, a ]

27 Functions

28 Defining Functions Function definition begins with def Function name and its arguments. def get_final_answer(filename): Documentation String line1 line2 return total_counter Colon. The indentation matters First line with less indentation is considered to be The keyword return indicates the outside of the function definition. value to be sent back to the caller. No header file or declaration of types of function or arguments. CIS Intro to NLP

29 Python and Types Python determines the data types of variable bindings in a program automatically. Dynamic Typing But Python s not casual about types, it enforces the types of objects. Strong Typing So, for example, you can t just append an integer to a string. You must first convert the integer to a string itself. x = the answer is # Decides x is bound to a string. y = 23 print x + y # Decides y is bound to an integer. # Python will complain about this.

30 Calling a Function The syntax for a function call is: >>> def myfun(x, y): return x * y >>> myfun(3, 4) 12

31 Functions without returns All functions in Python have a return value even if no return line inside the code. Functions without a return return the special value None. None is a special constant in the language. None is used like NULL, void, or nil in other languages. None is also logically equivalent to False. The interpreter doesn t print None

32 Logical Expressions

33 True and False True and False are constants in Python. Other values equivalent to True and False: False: zero, None, empty container or object True: non-zero numbers, non-empty objects Comparison operators: ==,!=, <, <=, etc. X and Y have same value: X == Y Compare with X is Y : X and Y are two variables that refer to the identical same object.

34 Boolean Logic Expressions You can also combine Boolean expressions. True if a is True and b is True: a and b True if a is True or b is True: True if a is False: a or b not a Use parentheses as needed to disambiguate complex Boolean expressions.

35 Special Properties of and and or Actually and and or don t return True or False. They return the value of one of their sub-expressions (which may be a non-boolean value). X and Y and Z If all are true, returns value of Z. Otherwise, returns value of first false sub-expression. X or Y or Z If all are false, returns value of Z. Otherwise, returns value of first true sub-expression. And and or use lazy evaluation, so no further expressions are evaluated

36 Control of Flow

37 if Statements if x == 3: print X equals 3. elif x == 2: print X equals 2. else: print X equals something else. print This is outside the if. Be careful! The keyword if is also used in the syntax of filtered list comprehensions. Note: Use of indentation for blocks Colon (:) after boolean expression

38 while Loops >>> x = 3 >>> while x < 5: print x, "still in the loop" x = x still in the loop 4 still in the loop >>> x = 6 >>> while x < 5: print x, "still in the loop" >>>

39 For Loops

40 For Loops 1 For-each is Python s only for construction A for loop steps through each of the items in a collection type, or any other type of object which is iterable for <item> in <collection>: <statements> If <collection> is a list or a tuple, then the loop steps through each element of the sequence. If <collection> is a string, then the loop steps through each character of the string. for somechar in Hello World : print somechar

41 For Loops 2 for <item> in <collection>: <statements> <item> can be more complex than a single variable name. When the elements of <collection> are themselves sequences, then <item> can match the structure of the elements. This multiple assignment can make it easier to access the individual parts of each element. for (x, y) in [(a,1), (b,2), (c,3), (d,4)]: print x

42 String Operations A number of methods for the string class perform useful formatting operations: >>> hello.upper() HELLO Check the Python documentation for many other handy string operations. Helpful hint: use <string>.strip() to strip off final newlines from lines read from files

43 Importing and Modules

44 Importing and Modules Use classes & functions defined in another file. A Python module is a single file with the same name (plus the.py extension) Where does Python look for module files? The list of directories where Python looks: sys.path To add a directory of your own to this list, append it to this list. sys.path.append( /my/new/path )

45 Commonly Used Modules Some useful modules to import, included with Python: Module: sys Maxint Module: os Module: os.path - Lots of handy stuff. - OS specific code. - Directory processing.

46 More Commonly Used Modules Module: math Exponents sqrt - Mathematical code. Module: Random - Random number code. Randrange Uniform Choice Shuffle To see what s in the standard library of modules, check out the Python Library Reference: Or O Reilly s Python in a Nutshell: (URL works inside of UPenn, afaik, otherwise see the course web page)

47 Finally pass It does absolutely nothing. Just holds the place of where something should go syntactically. Programmers like to use it to waste time in some code, or to hold the place where they would like put some real code at a later time. for i in range(1000): pass

48 ArcPy Python Scripting Basics

49 Why use Python scripting in ArcMap? Python: a free, cross-platform, and easy to learn language Used to execute single tools or strings of tools Develop, execute, and share geoprocessing workflows Automation

50 ArcPy The access point to every geoprocessing tool A package of functions, classes and modules, all related to scripting in ArcGIS - Functions that enhance geoprocessing workflows (ListFeatureClasses, Describe, SearchCursor ) - Classes that can be used to create complex objects (SpatialReference and FieldMap objects) - Modules that provide additional functionality (Mapping and SpatialAnalyst modules) Builds on arcgisscripting module (pre-10.0)

51 ArcGIS Python window Embedded, interactive Python window within ArcGIS Access to ArcPy, any Python functionality Great for experimenting with and learning Python

52 Executing a tool in Python ArcPy must be imported Follow syntax: arcpy.toolname_toolboxalias() Enter input and output parameters # Import ArcPy import arcpy # Set workspace environment arcpy.env.workspace = C:/Data # Execute Geoprocessing tool arcpy.buffer_analysis( roads.shp", roads_buffer.shp", 50 Meters )

53 Getting tool syntax Results window, Copy as Python Snippet Export Model to Python script Drag tool into Python window Tool documentation arcpy.usage( Buffer_analysis )

54 Setting environments in Python Accessed from arcpy.env Common environments: Workspace, coordinate system, extent Examples: arcpy.env.workspace arcpy.env.outputcoordinatesystem arcpy.env.extent

55 Live Demo Live demonstration of running geoprocessing functions in ArcMap

56 Geoprocessing messages Tools return three types of messages: Informative messages Warning messages Error messages Displayed in the ArcGIS Python window arcpy.getmessages() GetMessages(): All messages GetMessages(0): Only informative messages GetMessages(1): Only warning messages GetMessages(2): Only error messages

57 ArcPy functions: GetMessages # Execute Geoprocessing tool arcpy.buffer_analysis( roads.shp", roads_buffer.shp", 50 Meters ) # Print the execution messages print arcpy.getmessages() Executing: Buffer roads.shp roads_buffer.shp 50 Meters Start Time: Tue July 13 13:52: Executing (Buffer) successfully. End Time: Tue July 13 13:52: (Elapsed Time: 5.00

58 Error handling basics Why do errors occur? Incorrect tool use Typos Syntax errors Python error handling Try Except try: # Do Something except: # A failure occurred, do something else

59 Try, Except Statement # Start Try block try: arcpy.buffer_analysis( roads.shp", roads_buffer.shp", 50 Meters ) # If an error occurs except: # Print that Buffer failed and why print "Buffer failed print arcpy.getmessages(2)

60 Live Demo Live demonstration of error handling in Python/ArcPy

61 Geoprocessing Tasks

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63 ArcPy functions Perform useful scripting tasks Print geoprocessing messages (GetMessages) List data to aid batch processing (ListFeatureClasses, ListFields; 12 total List functions) Getting data properties (Describe) Allow automation of manual tasks

64 Batch processing Run a geoprocessing operation multiple times with some automation Example: Using the Clip tool to clip every feature class in a workspace to a boundary List functions used in Python to perform batch processing

65 ArcPy functions: ListFeatureClasses # Set the workspace arcpy.env.workspace = C:/Data/FileGDB.gdb/FDs" # Get a list of all polygon feature classes fclist = arcpy.listfeatureclasses("*", "polygon") # Print the list of feature classes one at a time for fc in fclist: print fc

66 ArcPy functions: ListFields # List all fields in a feature class fields = arcpy.listfields( C:/Data/roads.shp") # loop through all the fields for field in fields: # print the field s name and field type print field.name, field.type Field objects have properties name, aliasname, domain, editable, hasindex, isnullable, isunique, length, precision, scale, type

67 ArcPy functions: Describe Returns an object with properties Allows script to determine properties of data Data type (shapefile, coverage, network dataset, etc.) Shape type (point, polygon, line, etc.) Spatial reference Extent of features Path

68 ArcPy functions: Describe # Describe a feature class desc = arcpy.describe( C:/Data/roads.shp") # Branch script logic based on ShapeType property if desc.shapetype == "Polyline" : print "The fc is a line feature class elif desc.shapetype == "Polygon" : print "The fc is a polygon feature class else: print The fc is not a line or polygon."

69 Receiving arguments Arguments are inputs to a script - Makes script more flexible and portable - Values passed to script from user, instead of hard-coded Use GetParameterAsText to read arguments - Zero-based index Connect script to an ArcGIS script tool

70 Receiving arguments # Create variables from input arguments inputfc = arcpy.getparameterastext(0) outputfc = arcpy.getparameterastext(1) # First and third parameters come from arguments arcpy.clip_analysis(inputfc, C:/Data/boundary.shp", outputfc)

71 Python scripting resources ArcGIS Resource Centers Online documentation Geoprocessing Resource Center: script gallery, blog, presentations Python Reference Books Learning Python by Mark Lutz & David Ascher Core Python Programming by Wesley J. Chun Python Organization DiveIntoPython.org Free tutorial: