DATARMOR: Comment s'y préparer? Tina Odaka
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1 DATARMOR: Comment s'y préparer? Tina Odaka
2 PLAN DATARMOR: Detailed explanation on hard ware What can you do today to be ready for DATARMOR
3 DATARMOR : convention de nommage ClusterHPC REF SCRATCH ClusterSMP HOME ClusterWEB + CacheWEB DATAWORK
4 Configuration Global: Datarmor ACCES CLIENTS (10 Gigabit Ethernet connected to IFREMER and INFUSER network (SHOM / IUEM / ENSTA Bretagne) Cluster HPC 426 Tflops cores Login nodes Cluster SMP 8 Tflops 240 cores 5 To RAM NFS /CIFS Cluster WEB Cache WEB 10 servers 100 To net Batch system: PBS Pro Visualisation 4 GPUs InfiniBand FDR Gateway Lustre NFS/CIFS Lustre servers SCRATCH Lustre: 500 To net REF Lustre: 1,5 Po net Gateway GPFS NFS/CIFS DATAWORK GPFS: 5 Po net clients GPFS NFS /CIFS HOME 32 To net ACCES CLIENTS NFS / CIFS / FTP
5 Cluster HPC ACCES CLIENTS (10 Gigabit Ethernet connected to IFREMER and INFUSER network (SHOM / IUEM / ENSTA Bretagne) Login nodes Cluster HPC 426 Tflops cores 396 Nodes 99 Lams 3 Racks Batch system: PBS Pro InfiniBand FDR
6 Compute nodes Cluster HPC CPU Intel E v4 : 14 cores, 2.4 Ghz 1 node: 2CPUS => 28 cores / nodes 1 lam => 4 nodes 1 IRU => 9 lam => 36 nodes 1E rack = 4 IRU = 144 nodes = 4032 cores!!dense!! 1E cell = 2 E rack. DATARMOR have 1 E cell and ¾ E rack.
7 Cluster HPC Cooling Rack Compute Lams Compute Lams Compute Lams
8 Cluster HPC ICE XA connected to Cooling Distribution Unit CDU connected to Dry cooler (free cooling) Dry cooler works outside temperature max 25 degree. Back up is done by Cold water system in IFREMER.
9 Infra: more in detail poster DATARMOR aujourd'hui, Les Photos: (IMA et RIC IFREMER)
10 Memory Cluster HPC 128Go/node, 50To Total. Network Dual InfiniBand 4x FDR topologie Enhanced Hypercube. Login nodes and available services Intel Parallel Studio XE, Vtune, DDT(256 cores), SGI MPI Submitting jobs : PBS PRO (qsub)
11 Cluster HPC: access to data ClusterHPC REF SCRATCH DATAWORK HOME
12 Cluster SMP ACCES CLIENTS (10 Gigabit Ethernet connected to IFREMER and INFUSER network (SHOM / IUEM / ENSTA Bretagne) Cluster SMP 240Tflops cores 5 To RAM Batch system: PBS Pro InfiniBand FDR ACCES CLIENTS NFS / CIFS / FTP
13 UV3000 Cluster SMP CPU Intel Xeon E5-4650v Ghz30 MB L3 cache105 1 node: 2CPUS => 24 cores / nodes Total 10 node, => 240 Cores/ machine. Memory: 160 x 32 GB DDR hz = 5.1 To / machine. SMP => 10 node but can boot as 1 big node. Use pbs as Cluster HPC (same login nodes)
14 REF and SCRATCH: Lustre ACCES CLIENTS (10 Gigabit Ethernet connected to IFREMER and INFUSER network (SHOM / IUEM / ENSTA Bretagne) InfiniBand FDR Gateway Lustre NFS/CIFS Temporally HPC DATA Lustre: 500 To net Lustre servers ACCES CLIENTS NFS / CIFS / FTP Reference DATA Lustre: 1,5 Po net
15 REF and SCRATCH: Lustre Lustre => parallel file system (/temp and /work on caparmor) Separated meta data and object data in physical servers REF and SCRATCH are hosted in Lustre material is same, but will be configured so that there will be Difference in performance. Gateway-lustre will assure the NFS (linux) CIFS (windows) access
16 DATAWORK: GPFS ACCES CLIENTS (10 Gigabit Ethernet connected to IFREMER and INFUSER network (SHOM / IUEM / ENSTA Bretagne) InfiniBand FDR Work DATA GPFS: 5 Po net Gateway GPFS NFS/CIFS clients GPFS ACCES CLIENTS NFS / CIFS / FTP
17 DATAWORK: GPFS GPFS=> parallel file system (IBM) Separated meta data and object data but can be in mixed in physical servers New to PCIM but GPFS is a stable and well know product. DATAWORK is hosted in GPFS Gateway-GPFS will assure the NFS (linux) CIFS (windows) access
18 HOME ACCES CLIENTS (10 Gigabit Ethernet connected to IFREMER and INFUSER network (SHOM / IUEM / ENSTA Bretagne) InfiniBand FDR NFS /CIFS HOME 32 To net ACCES CLIENTS NFS / CIFS / FTP
19 HOME User quota as CAPARMOR Two re-dundant NFS server Same space as caparmor s HOME. NFS, as caparmor. Possible to mount from windows
20 Cluster WEB and Cache WEB ACCES CLIENTS (10 Gigabit Ethernet connected to IFREMER and INFUSER network (SHOM / IUEM / ENSTA Bretagne) Cluster WEB Cache WEB 10 servers 100 To net InfiniBand FDR ACCES CLIENTS NFS / CIFS / FTP
21 Cluster WEB and Cache WEB To host web server it can Fast access to small files Redundant with FC disk Can host virtual machines. Half of the nodes have direct connection to IB network.
22 Visualization 2 Machine for 128 GB memory (16x 16GB) 2 NVIDIA Quadro x processors E v4 : 10 cores 2.2Ghz IB FDR 10Gb dual-port Enfanced possibility for users to visualize prepost calcul
23 Visualization NVIDIA Quadro cuda cores 1 T flops (single precision 0.5T flops (double precision) Memory 6GB GDDR5 Memory bandwidth 114 GB/s
24 Planning A partir de Debut 2017 : ouverture aux utilisateurs (DATARMOR challenge inclus) Fin Mars 2017 : Arrêt Caparmor => VERY SHORT transission like nymphea=>caparmor nymphea: Alpha >caparmor: intel -> DATARMOR : intel BUT Should be easier than last transition
25 What you can prepare today: for CAPARMOR users Check with your code with new compiler Intel comp ver 15 Test aggressive compiler optimization to see if you get wrong result or not CAPARMOR DATARMOR CPU Nehalem Broadway Speed 2.8 Ghz 2.4 Ghz Flops/clock (each core) 4 16
26 What you can prepare today: for CAPARMOR users HPC: parallel (Multi thread.) Be ready for 28 thread OpenMP with MPI. (hybrid) CAPARMOR DATARMOR Cores/node 8 28 Memory/node 24 Go 128 Go Memory/core 3 Go 4,5Go
27 What you can prepare today RAPPEL: think your data now!! How you need to organize your data for datarmor? Separating scratch home workdata ref Think time line of your data (which data are worse kept for years, which data must have back up,..)
28 What you can do today: new users New users: Non Fortran (or C) users Do you use docker? If so contact us and we can try with UV2000 we have today to test submit your job. Visualisation? We will have test environment in autome. Plz contact us so that we can make test do not forget to tell us which software you use. Whats the size of data you use What is the graphic card you use today
29 Merci Poster DATARMOR aujourd'hui, Les Photos: (IMA et RIC IFREMER)
J O U R N É E D E R E N C O N T R E D E S U T I L I S A T E U R S D U P Ô L E D E C A L C U L I N T E N S I F P O U R L A M E R P I E R R E C O T T Y
J O U R N É E D E R E N C O N T R E D E S U T I L I S A T E U R S D U P Ô L E D E C A L C U L I N T E N S I F P O U R L A M E R P I E R R E C O T T Y Le programme de la journée 9 h 40-12 h 10 DATARMOR:
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