v UGrid Clipping GMS 10.3 Tutorial Using Clipping display option to visualize UGrid data Prerequisite Tutorials Getting Started
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- Camilla Burns
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1 v GMS 10.3 Tutorial Using Clipping display option to visualize UGrid data Objectives This tutorial describes the UGrid clipping tool. The UGrid clipping tool can be used to cut away a portion of a UGrid to visualize the data inside. Prerequisite Tutorials Getting Started Required Components Grid module Time minutes Page 1 of 9 Aquaveo 2017
2 1 Introduction Using a Clipping Plane Opening the UGrid Stratigraphy Project Manually Setting a Clipping Plane Using the Clipping Plane Widget Clipping to Scalar Values Opening the UGrid Project Clipping to UGrid cells above a scalar value Clipping to smoothed UGrid within a scalar range Removing additional cells with cell visibility Conclusion Introduction The UGrid clipping display option can be used to cut away a portion of a UGrid and visualize the data inside the grid. It can be used to cut part of the UGrid using a clipping plane or by using scalar dataset values. 2 Using a Clipping Plane For this section of the tutorial, open a UGrid with complex stratigraphy, then use a clipping plane to cut away a portion of a UGrid to visualize the inner stratigraphy. To get started, do the following: 1. Launch GMS. 2. If GMS is already running, select File New to ensure that the program settings are restored to the default state. 2.1 Opening the UGrid Stratigraphy Project Next, open the GMS project containing the UGrid: 1. Click Open to bring up the Open dialog. 2. Select All Files (*.*) from the Files of type drop-down. 3. Browse to the Basics\UGridClip directory and select olele.gpr. 4. Click Open to import the project and close the Open dialog. The UGrid should appear in the Graphics Window as shown in Figure 1. Page 2 of 9 Aquaveo 2017
3 Figure 1 UGrid with outer stratigraphy 2.2 Manually Setting a Clipping Plane The location of the clipping plane can be specified manually by entering a point on the plane, and the plane's normal vector. For this project, display the stratigraphy looking from the southeast with a plane running through cell ID 613. Start by determining the location and normal vector for the clipping plane. 1. Select the Edit Select by ID menu item to open the Select dialog. 2. Set the ID to Click OK to exit the Select dialog. From that status bar at the bottom of the GMS window notice the centroid of the cell is at approximately ( , , 8.7). By default, the normal vector points away from the portion of the UGrid to be clipped. Therefore, to clip away the southwest portion of the UGrid the normal vector should be set to (-1, 1, 0). 4. Select the Edit Unselect All menu item to clear the selected cell. Now to turn on the clipping display option: 5. Click Display Options to bring up the Display Options dialog. 6. Select UGrid Data from the list on the left. 7. Turn on the Clip option, and click on the Options... button to open the UGrid Clip Settings dialog. Page 3 of 9 Aquaveo 2017
4 8. The Clip Type should be set to Plane. 9. Change the Clip To setting to Partial Cells. 10. Enter the following values in the rest of the UGrid Clip Settings dialog: Item Value Plane Point X Plane Point Y Plane Point Z 8.7 Plane Normal X -1.0 Plane Normal Y 1.0 Plane Normal Z Click OK to close the UGrid Clip Settings dialog. 12. Click OK to close the Display Options dialog. The clipped UGrid should appear in the Graphics Window as shown in Figure 2. Figure 2 UGrid with clipped stratigraphy 2.3 Using the Clipping Plane Widget The clipping plane widget provides a much easier way to position the clipping plane. 1. Select the Edit Clip Plane tool. The clipping plane widget should appear in the Graphics Window as shown in Figure 3. The widget shows the plane as a translucent rectangle; the point defining the plane is shown in the rectangle; and the normal is shown as an arrowed line segment passing through the plane. A grayed out bounding box is displayed around the UGrid. Page 4 of 9 Aquaveo 2017
5 The plane, point, and normal can each be edited by clicking on them and dragging them within the bounding box in the Graphics Window. Dragging the clipping plane moves the plane point back and forth along the plane normal. Dragging the plane point moves it about the surface of the plane. And dragging tail or head of the normal vector changes the normal orientation about the plane point. 2. Change the clipping plane location by clicking in the plane and dragging it toward the back corner of the gray bounding box. Experiment with moving the plane about the UGrid by also adjusting the plane point and normal. Figure 3 UGrid with clipping plane widget 3 Clipping to Scalar Values In this section of the tutorial, load a GMS project with a UGrid containing a dataset with cell-by-cell contaminate concentration values in parts-per-million (ppm). Use the UGrid clip display option to display the contaminate plume. 3.1 Opening the UGrid Project First, open the GMS project containing the UGrid data: 1. Select File New to close the olele.gpr project, and if desired save the project to different location. Page 5 of 9 Aquaveo 2017
6 2. Click Open to bring up the Open dialog. 3. Select All Files (*.*) from the Files of type drop-down. 4. Browse to the Basics\UGridClip directory and select contaminate_plume.gpr. 5. Click Open to import the project and close the Open dialog. The UGrid with the concentration data should appear in the Graphics Window as shown in Figure 4, with contours of the plume visible on the front left face of the grid. Figure 4 UGrid with contaminate concentration contours 3.2 Clipping to UGrid cells above a scalar value Use scalar clipping to display the portion of the UGrid with a contaminant value greater than 2000 ppm. 1. Click Display Options to bring up the Display Options dialog. 2. Select UGrid Data in the list on the left. 3. Turn on the Clip option, and select the Options button to open the UGrid Clip Settings dialog. 4. Change the Clip Type to Scalar. 5. The Clip To option should be set to Whole Cells. 6. Enter for the Scalar Value. Page 6 of 9 Aquaveo 2017
7 7. Click OK to close the UGrid Clip Settings dialog. 8. Click OK to close the Display Options dialog. The Graphics Window should display the plume as shown in Figure 5. Figure 5 UGrid contaminate plume with scalar and whole cells 3.3 Clipping to smoothed UGrid within a scalar range Now use the Scalar Range clip option to display an outer portion of the plume as well as using the Partial Cells option to get a smoother view of the plume. To use the Partial Cells option with scalar values it is necessary to use a dataset where the dataset values are on the nodes (or points) of the UGrid rather than the cell. To do so, convert the cell dataset into a node dataset. 1. Right-click on the contaminant dataset and select the Convert to Point Dataset menu item to bring up the New Dataset Name dialog. 2. Click OK to use the default dataset name and close the New Dataset Name dialog. Now with the new dataset ( contaminant point data ) selected as the active dataset, change the clip display options: 3. Click Display Options to bring up the Display Options dialog. 4. Click on the Options button next to the Clip option to open the UGrid Clip Settings dialog. Page 7 of 9 Aquaveo 2017
8 5. Change the Clip Type to Scalar Range. 6. Change the Clip To option to Partial Cells. 7. Enter for the Minimum Scalar Value. 8. Enter for the Maximum Scalar Value. 9. Click OK to close the UGrid Clip Settings dialog. An alert should pop up warning that a point dataset must be used when clipping to scalar values and partial cells. 10. Click OK to close the alert. 11. Click OK to close the Display Options dialog. The Graphics Window should display the plume as shown in Figure 6. Figure 6 UGrid contaminate plume with scalar range and partial cells 3.4 Removing additional cells with cell visibility Cell visibility can be used along with the clipping display option to remove more of the UGrid and see inside the plume. To do so, hide the cells near the front-left face of the UGrid. 1. Switch to Plan View. 2. Using the Select Cells tool, drag a rectangle in the Graphics Window to select the cells of the bottom half of the plume. Page 8 of 9 Aquaveo 2017
9 3. Click on the Hide Cells command to hide the selected cells. 4. Switch to Oblique View. The Graphics Window should appear similar to Figure 7. The hidden cells can be redisplayed using the Show Cells command. Figure 7 UGrid contaminate plume with hidden cells 4 Conclusion This concludes the tutorial. Topics covered in the tutorial include clipping UGrids with a clipping plane, clipping above or below a scalar value, clipping to a scalar range, and using cell visibility to clip additional cells. Page 9 of 9 Aquaveo 2017
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v. 10.1 GMS 10.1 Tutorial Introduction to the UTEXAS interface in GMS for a simple embankment analysis Objectives Learn how to build a simple UTEXAS model in GMS. Prerequisite Tutorials Feature Objects
MODFLOW STR Package The MODFLOW Stream (STR) Package Interface in GMS
v. 10.1 GMS 10.1 Tutorial The MODFLOW Stream (STR) Package Interface in GMS Objectives Learn how to create a model containing STR-type streams. Create a conceptual model of the streams using arcs and orient
GMS 10.4 Tutorial RT3D Instantaneous Aerobic Degradation
v. 10.4 GMS 10.4 Tutorial Objectives Simulate the reaction for instantaneous aerobic degradation of hydrocarbons using a predefined user reaction package. Prerequisite Tutorials MT2DMS Grid Approach Required
SMART Recorder. Record. Pause. Stop
SMART Recorder The recorder is used to record actions that are done on the interactive screen. If a microphone is attached to the computer, narration can be recorded. After the recording has been created,
v GMS 10.0 Tutorial MODFLOW Advanced PEST Pilot Points, SVD-Assist, Parallel PEST Prerequisite Tutorials MODFLOW PEST Pilot Points
v. 10.0 GMS 10.0 Tutorial Pilot Points, SVD-Assist, Parallel PEST Objectives Learn how to parameterize a MODFLOW model and run PEST to obtain optimal parameter values. Experiment with truncated singular
Objectives Learn how to work with projections in SMS, and how to combine data from different coordinate systems into the same SMS project.
v. 12.3 SMS 12.3 Tutorial Working with map projections in SMS Objectives Learn how to work with projections in SMS, and how to combine data from different coordinate systems into the same SMS project.
MODFLOW PEST Pilot Points Use pilot points with PEST to automatically calibrate a MODFLOW model
v. 10.2 GMS 10.2 Tutorial Use pilot points with PEST to automatically calibrate a MODFLOW model Objectives Learn the features and options related to pilot points when used with PEST. Use fixed value pilot
Surface Modeling With TINs
GMS TUTORIALS The TIN module in GMS is used for general-purpose surface modeling. TIN is an acronym for Triangulated Irregular Network. TINs are formed by connecting a set of xyz points with edges to form
1. Open a MODFLOW simulation and run MODFLOW. 2. Initialize MT3D and enter the data for several MT3D packages. 3. Run MT3D and read the solution.
GMS TUTORIALS This tutorial describes how to perform an MT3DMS simulation within GMS. An MT3DMS model can be constructed in GMS using one of two approaches: the conceptual model approach or the grid approach.
Stratigraphy Modeling Horizons And Solids
GMS TUTORIALS Stratigraphy Modeling Horizons And Solids The Solid module of GMS is used to construct three-dimensional models of stratigraphy. Once the solids are created: cross sections can be cut anywhere
v GMS 10.0 Tutorial MODFLOW Transient Calibration Calibrating transient MODFLOW models
v. 10.0 GMS 10.0 Tutorial MODFLOW Transient Calibration Calibrating transient MODFLOW models Objectives GMS provides a powerful suite of tools for inputting and managing transient data. These tools allow
v Map Module Operations SMS Tutorials Prerequisites Requirements Time Objectives
v. 12.3 SMS 12.3 Tutorial Objectives This tutorial describes the fundamental tools in the Map module of the SMS. This tutorial provides information that is useful when constructing any type of geometric
MODFLOW PEST Transient Pump Test Calibration Tools for calibrating transient MODFLOW models
v. 10.2 GMS 10.2 Tutorial Tools for calibrating transient MODFLOW models Objectives Learn how to setup a transient simulation, import transient observation data, and use PEST to calibrate the model. Prerequisite
v SMS 13.0 Tutorial Scatter Data Define Scatter Extents Requirements Scatter Module Map Module Time minutes
v. 13.0 SMS 13.0 Tutorial Scatter Data Objectives This tutorial demonstrates how to define the area of impact or extent of a scattered data set or TIN (triangulated irregular networks) in the scatter module
Objectives Learn how to work with projections in GMS, and how to combine data from different coordinate systems into the same GMS project.
v. 10.2 GMS 10.2 Tutorial Working with map projections in GMS Objectives Learn how to work with projections in GMS, and how to combine data from different coordinate systems into the same GMS project.
MT3DMS Grid Approach GMS 7.0 TUTORIALS. 1 Introduction. 1.1 Contents
GMS 7.0 TUTORIALS 1 Introduction This tutorial describes how to perform an MT3DMS simulation within GMS. An MT3DMS model can be constructed in GMS using one of two approaches: the conceptual model approach
GMS 9.1 Tutorial MODFLOW Conceptual Model Approach I Build a basic MODFLOW model using the conceptual model approach
v. 9.1 GMS 9.1 Tutorial Build a basic MODFLOW model using the conceptual model approach Objectives The conceptual model approach involves using the GIS tools in the Map module to develop a conceptual model
v. 9.1 GMS 9.1 Tutorial MODFLOW PEST Transient Pump Test Calibration Tools for calibrating transient MODFLOW models Prerequisite Tutorials
v. 9.1 GMS 9.1 Tutorial MODFLOW PEST Transient Pump Test Calibration Tools for calibrating transient MODFLOW models Objectives Learn how to setup a transient simulation, import transient observation data,
v GMS 10.0 Tutorial MODFLOW PEST Transient Pump Test Calibration Tools for calibrating transient MODFLOW models
v. 10.0 GMS 10.0 Tutorial MODFLOW PEST Transient Pump Test Calibration Tools for calibrating transient MODFLOW models Objectives Learn how to setup a transient simulation, import transient observation
v Overview SMS Tutorials Prerequisites Requirements Time Objectives
v. 12.2 SMS 12.2 Tutorial Overview Objectives This tutorial describes the major components of the SMS interface and gives a brief introduction to the different SMS modules. Ideally, this tutorial should
Objectives Learn how to work with projections in GMS, and how to combine data from different coordinate systems into the same GMS project.
v. 10.4 GMS 10.4 Tutorial Working with map projections in GMS Objectives Learn how to work with projections in GMS, and how to combine data from different coordinate systems into the same GMS project.
Objectives Learn how to work with projections in SMS, and how to combine data from different coordinate systems into the same SMS project.
v. 12.2 SMS 12.2 Tutorial Working with map projections in SMS Objectives Learn how to work with projections in SMS, and how to combine data from different coordinate systems into the same SMS project.
v GMS 10.4 Tutorial FEMWATER Transport Model Build a FEMWATER model to simulate salinity intrusion
v. 10.4 GMS 10.4 Tutorial FEMWATER Transport Model Build a FEMWATER model to simulate salinity intrusion Objectives This tutorial demonstrates building a FEMWATER transport model using the conceptual model
SEAWAT Conceptual Model Approach Create a SEAWAT model in GMS using the conceptual model approach
v. 10.1 GMS 10.1 Tutorial Create a SEAWAT model in GMS using the conceptual model approach Objectives Learn to create a SEAWAT model in GMS using the conceptual model approach. Use the GIS tools in the