High Performance Computing Resources at MSU
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1 MICHIGAN STATE UNIVERSITY High Performance Computing Resources at MSU Last Update: August 15, 2017 Institute for Cyber-Enabled Research
2 Misson icer is MSU s central research computing facility. The unit provides high performance computing platforms, outstanding user support and consultation with staff experienced in scientific computing.
3 Why Use HPC? Need CPU Cycles Big Data (hundreds of gigabytes) Large Memory (64gb - 6 TB) Data Sharing No DIY Specialized Software (Linux environment)
4 Components of HPCC a cluster of homogenous computers + high speed networking + shared file systems + infrastructure + people
5 HPC vs PC Each computing node in a cluster is a single computer Feature Your Computer 2014 Cluster Processors (sockets) 1 2 per node Cores or more per node, thousands per cluster Speed ghz ghz Connection to other computers Campus ethernet 1,000 MBit/sec "Infiniband" 50,000 MBit/sec Computers (nodes) 1 => 8 cores total 223 => 4,460 cores total Users 1 ~1,200 High Performance => Running work in parallel, for long periods of time Schedule On Demand 24/7, Queue
6 Facilities Compute Resources 17,500 cores 596 compute nodes 110 TB of memory Storage Resources 2.3 PB permanent 15 TB small I/O scratch 1.9 PB temporary scratch 300 accelerators (GPU & Phi) High-speed InfiniBand network
7 Intel GHz Intel Xeon E5-2670v2 Nodes Cores/Node Memory/Node Accelerators/Node GB CPU: 128 GB Phi: 16 GB CPU: 128 GB GPU: 10 GB 6* 48/96 1 TB -6 TB 2x Xeon Phi 5110P (MIC) 2 x NVIDIA K20c
8 Intel GHz Intel Xeon E5-2680v4 Nodes Cores/Node Memory/Node Accelerators/Node GB CPU: 256 GB GPU: 256 GB 4 x NVIDIA K80 3* TB
9 Storage Facilities Home/Research Long term, replicated Store scripts and results here Small I/O Scratch 50GB per user 100 GB per user Home (/mnt/home) Small I/O Scratch (/mnt/ffs17) Perform heavy read/write on lots Scratch of small files here; Not backed up Temporary, high speed storage Perform I/O on very large files or data here. Up to 1TB per group Larger quotas available for purchase Up to 50 TB per user (up to a million files) Research (/mnt/research) Scratch (/mnt/scratch)
10 Data Transfer ssh utilities: scp, sftp GUI Applications: Filezilla, Cyberduck Map HPC Drives Globus
11 Software Open Source Titles (>800) Optimized math and communication libraries Commercial Software (ANSYS, MATLAB, Stata, and SAS) Install your own software! We can help.
12 Research Consulting Patrick Bills B.S. Comp. Mathematics, M.S. Entomology Chun-Min Chang Ph.D, Physics Quantum Designing, integrating, building mechanical and molecular dynamics & analyzing simulations database systems Yongjun Choi Xiaoge Wang Ph.D, Aerospace Engineering Ph.D, Computer science Nanye Long Ph.D, Animal science Development of Statistical Genetics Computational parallel algorithms plasma physics, for various science & Scientific code engineering development applications
13 User Support User Documentation Workshops & Seminars Helpdesk (Ticketing and In-person)
14 Training Introduction to Linux/Unix* Introduction to HPCC* Matplotlib for Visualization MATLAB XSEDE Parallel Computing Request a Workshop (> 8 people) *Offered 2-3 times per semester
15 Quick Start Guide Registration Via our website: Access Policy Getting higher priority Applying for grants Access is FREE - supported by VPRGS Large users can fund hardware from grants for priority use. Plan in advance. Talk to us.
16 Buy-In Affiliations
17 Research Supported We support research across many colleges including Agriculture & Natural Resources, Natural Sciences, Engineering and Social Sciences Large Buy-In Users Include: Physics Theory Group Nuclear Theory & Astronomy IceCube Neutrino Observatory at MSU BEACON: An NSF Center for the Study of Evolution in Action Biomedical Informatics Core Spatial & Community Ecology Lab Computational Chemistry: Merz Group; Dickson Lab
18 Get in Contact, Stay in Contact facebook.com/msuicer youtube.com/icermsu instagram.com/icermsu
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