Package IRkernel. January 7, 2019
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- Louisa Knight
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1 Title Native R Kernel for the 'Jupyter Notebook' Package IRkernel January 7, 2019 The R kernel for the 'Jupyter' environment executes R code which the front-end ('Jupyter Notebook' or other front-ends) submits to the kernel via the network. Version Depends R (>= 3.2.0) Suggests testthat, roxygen2 SystemRequirements jupyter, jupyter_kernel_test (Python package for testing) License MIT + file LICENSE LazyData true Encoding UTF-8 Imports repr (>= ), methods, evaluate (>= 0.10), IRdisplay (>= ), pbdzmq (>= 0.2-1), crayon, jsonlite (>= 0.9.6), uuid, digest Collate 'class_unions.r' 'logging.r' 'comm_manager.r' 'compat.r' 'environment_runtime.r' 'environment_shadow.r' 'options.r' 'execution.r' 'handlers.r' 'help.r' 'installspec.r' 'utils.r' 'kernel.r' 'main.r' 'onload.r' RoxygenNote NeedsCompilation no Author Thomas Kluyver [aut, cph], Philipp Angerer [aut, cph, cre] (< Jan Schulz [aut, cph], Karthik Ram [aut, cph] Maintainer Philipp Angerer <phil.angerer@gmail.com> Repository CRAN Date/Publication :50:11 UTC 1
2 2 comm_manager R topics documented: Comm-class CommManager-class comm_manager installspec IRkernel log_* main Index 6 Comm-class The Comm Has methods able to register and handle message callbacks CommManager-class The CommManager Has methods able to register comms/targets and process comm messages comm_manager Get global CommManager instance Get global CommManager instance comm_manager() Value CommManager instance if a kernel is running, else NULL
3 installspec 3 installspec Install the kernelspec to tell Jupyter about IRkernel. This can be called multiple times for different R interpreter, but you have to give a different name (and displayname to see a difference in the notebook UI). If the same name is give, it will overwrite older versions of the kernel spec with that name! installspec(user = NULL, name = "ir", displayname = "R", rprofile = NULL, prefix = NULL) Arguments user name displayname rprofile prefix Install into user directory ($XDG_DATA_HOME/jupyter/kernels) or globally? (default: NULL but treated as TRUE if "prefix" is not specified) The name of the kernel (default "ir") The name which is displayed in the notebook (default: "R") (optional) Path to kernel-specific Rprofile (defaults to system-level settings) (optional) Path to alternate directory to install kernelspec into (default: NULL) Value Exit code of the jupyter kernelspec install call. IRkernel An R kernel for Jupyter. Jupyter speaks a JSON+ZMQ protocol to a kernel which is responsible for executing code. This package is a kernel for the R language. jupyter_option_defaults Format An object of class list of length 6.
4 4 log_* Options The following can be set/read via options(opt.name =...) / getoption('opt.name') jupyter.log_level 1L (errors), 2L (warnings), or 3L (debug). 1L is the default. jupyter.pager_classes Classes to use the pager for instead of displaying them inline. Default: help pages jupyter.in_kernel TRUE if this code is executed in a running kernel. Set to pretend being/not being in a kernel jupyter.rich_display Use more than just text display jupyter.display_mimetypes The formats emitted when any return value is to be displayed (default: all mimetypes listed here) jupyter.plot_mimetypes The plot formats emitted to the frontend when a plot is displayed. (default: image/png, application/pdf, and image/svg+xml) See Also installspec log_* Kernel logging functions A set of exported logging utilities that have the capability to be used in upstream projects. Log level and log file can be set via R package options e.g. options(jupyter.log_level = 2L) or from the environment variables JUPYTER_LOG_LEVEL and JUPYTER_LOGFILE. log_debug(...) log_info(...) log_error(...) Arguments... message to log
5 main 5 main Initialise and run the kernel Initialise and run the kernel main(connection_file = "") Arguments connection_file The path to the Jupyter connection file, written by the frontend
6 Index Topic datasets IRkernel, 3 Comm (Comm-class), 2 Comm-class, 2 comm_manager, 2 CommManager, 2 CommManager (CommManager-class), 2 CommManager-class, 2 installspec, 3, 4 IRkernel, 3 IRkernel-options (IRkernel), 3 IRkernel-package (IRkernel), 3 jupyter_option_defaults (IRkernel), 3 log_*, 4 log_debug (log_*), 4 log_error (log_*), 4 log_info (log_*), 4 main, 5 6
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