Reproducible Homerange Analysis
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- Gyles Willis
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1 Reproducible Homerange Analysis (Sat Aug 09 15:28: ) based on the rhr package This is an automatically generated file with all parameters and settings, in order to enable later replication of the same analysis given the same data set. Input data Relocations read from: This file contained the following column names, which were remapped to: id to id this is the animal id Longitude to lon this is the lon Latitude to lat this is the latitude timestamp to date this is the date NA to time this is the time The spatial bounding box was: xmin: xmax: ymin: ymax: The restricted spatial bounding box was: xmin: xmax: ymin: ymax: The temporal bounding box was: tmin: :18:18 tmax: :06:54 The restricted temporal bounding box was: tmin: :18:18 tmax: :06:54 Number of relocations: Whole dataset 187 Restricted dataset 187 Input data Page 1 of 6
2 Information about animals Data for animal: LB_LP0009_1st_trip Number of relocations 108 Number of duplicates 0 Dealing with duplicates jitter Number incomplete 0 Final Number of relocations 108 Data for animal: LB_LP0009_2nd_trip Number of relocations 79 Number of duplicates 0 Dealing with duplicates jitter Number incomplete 0 Final Number of relocations 79 Site fidelity No of simulated trajectories 100 Error in switch(ct, ggplot = ggplotgrob(grobs[[ii.table]]), trellis = latticegrob(grobs[[ii.table]]), : EXPR must be a length 1 vector Error in switch(ct, ggplot = ggplotgrob(grobs[[ii.table]]), trellis = latticegrob(grobs[[ii.table]]), : EXPR must be a length 1 vector Time to statistical independence Input data Page 2 of 6
3 Interval [sec] Consecutive obervations 1 Alpha 0.25 Number of times above 3 Error in valid.viewport(x, y, width, height, just, gp, clip, xscale, yscale, : invalid 'yscale' in viewport Error in valid.viewport(x, y, width, height, just, gp, clip, xscale, yscale, : invalid 'yscale' in viewport Minimum convex polygon Isopleth level 95 Kernel density estimation Input data Page 3 of 6
4 Resolution [map units] 100 Buffer [map units] 1000 Level 95 Bandwidth method href Smoothing method fixed Kernel normal Contouring method volume Rescaling method none Local convex hull Type k Determine n automatically FALSE of n 40 Isopleth level 95 Error: is.character(projargs) is not TRUE Error: is.character(projargs) is not TRUE Asymptote Input data Page 4 of 6
5 Number of iterations 10 Minimum number of points 50 Incrementing by 50 Estimator Isopleth level 95 Number of consecutive times 5 mcp Tolerance to total area 5 Sampling sequential Error in gzfile(file, "rb"): cannot open the connection Not enough relocations Core area Resolution 100 Error in gzfile(file, "rb"): cannot open the connection Error in gzfile(file, "rb"): cannot open the connection Input data Page 5 of 6
6 R Session Info: R version ( ) Plattform: x86_64 w64 mingw32(x86 bit) locale: LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252; LC_MONETARY=English_Australia.1252 LC_NUMERIC=C; LC_TIME=English_Australia.1252 attached base packages: tools; grid; stats4; stats; graphics; grdevices; utils; datasets methods; base other attached packages: plotkml_0.4 4; trip_1.1 17; rhr_0.04; png_0.1 7 maptools_0.8 30; mapproj_1.2 2; rgdal_0.8 16; plyr_1.8.1; RCurl_ bitops_1.0 6; stringr_0.6.2; lubridate_1.3.3; KernSmooth_ gridextra_0.8.1; RJSONIO_ ; Rook_1.0 9; brew_1.0 6 rgeos_0.3 6; raster_2.2 31; Rcpp_0.11.2; adehabitathr_ adehabitatlt_0.3.16; scatterplot3d_0.3 35; TrackReconstruction_1.1 RColorBrewer_1.0 5; fields_7.1; maps_2.3 7; spam_ reshape2_1.4; ggmap_2.3; ggplot2_1.0.0; data.table_1.9.2 divemove_1.3.9; deldir_0.1 5; CircStats_0.2 4; boot_1.3 11; MASS_ adehabitatma_0.3.8; ade4_1.6 2; sp_ loaded via a namespace (and not attached): abind_1.4 0; aqp_1.7; catools_1.17; class_ classint_0.1 21; cluster_1.15.2; colorramps_2.3; colorspace_1.2 4 digest_0.6.4; dismo_0.9 3; e1071_1.6 3; FNN_1.1; foreign_ Formula_1.1 2; geosphere_1.3 8; gstat_1.0 19; gtable_0.1.2 Hmisc_3.14 4; intervals_0.14.0; labeling_0.2; lattice_ latticeextra_0.6 26; Matrix_1.1 3; memoise_0.2.1; mgcv_ munsell_0.4.2; nlme_ ; pixmap_0.4 11; plotrix_3.5 7; polyclip_1.3 0 proto_0.3 10; quantreg_5.05; reshape_0.8.5 RgoogleMaps_ ; rjson_0.2.14; RSAGA_0.93 6; scales_0.2.4; spacetime_1.1 0 SparseM_1.05; spatstat_1.37 0; splines_3.1.0; survival_ tensor_1.5; XML_ ; xts_0.9 7; zoo_ R SessionInfo Page 6 of 6
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