Package cleangeo. July 4, 2017
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1 Version Date Title Cleaning Geometries from Spatial Objects Package cleangeo July 4, 2017 Author Maintainer Depends R (>= 2.1), rgeos, maptools Imports methods, sp Suggests testthat, knitr, pbapply Provides a set of utility tools to inspect spatial objects, facilitate handling and reporting of topology errors and geometry validity issues. Finally, it provides a geometry cleaner that will fix all geometry problems, and eliminate (at least reduce) the likelihood of having issues when doing spatial data processing. License GPL (>= 2) URL VignetteBuilder knitr BugReports NeedsCompilation no Repository CRAN Date/Publication :13:28 UTC R topics documented: cleangeo clgeo_clean clgeo_cleanbypolygonation.polygon clgeo_cleanbypolygonation.polygons clgeo_cleanbypolygonation.spatialpolygons clgeo_collectionreport clgeo_geometryreport
2 2 clgeo_clean clgeo_isvalid clgeo_summaryreport clgeo_suspiciousfeatures Index 11 cleangeo Clean Geometries from Spatial Objects Details cleangeo provides a set of utility tools to inspect spatial objects, facilitate handling and reporting of topology errors and geometry validity issues. Finally, it provides a geometry cleaner that will fix all geometry problems, and eliminate (at least reduce) the likelihood of having issues when doing spatial data processing. Package: cleangeo Type: Package Version: Date: License: GPL(>=2.0) LazyLoad: yes clgeo_clean clgeo_clean Function to clean a spatial data collection clgeo_clean(sp, errors.only = NULL, strategy = "POLYGONATION", verbose = FALSE)
3 clgeo_cleanbypolygonation.polygon 3 sp errors.only strategy verbose object extending the Spatial-class as defined in sp an object of class vector giving the types of errors for which the output should bounded. Default value is NULL (i.e. the output will include features for which both errors and errors were raised.). At now, this argument accepts the error type "ORPHANED_HOLE". advanced strategy to clean geometries. Default is "POLYGONATION", alternate value is "BUFFER" (old method). Indicates wether the clean logs have to be printed. Default value is FALSE. an object extending the Spatial-class as defined in sp, with cleaned geometries. Note About cleaning strategy: The polygonation method is a tentative alternate method to triangulation to clean geometries and to the classical often used buffer approach. In the polygonation method, triangulation is skipped and a re-polygonation intuitive algorithm is applied to rebuild the source invalid geometry into one or more valid polygonal geometries. Examples require(maptools) file <- system.file("extdata", "example.shp", package = "cleangeo") sp <- readshapepoly(file) sp.clean <- clgeo_clean(sp) report.clean <- clgeo_collectionreport(sp.clean) clgeo_summaryreport(report.clean) clgeo_cleanbypolygonation.polygon clgeo_cleanbypolygonation.polygon Function to clean a Polygon-class object by polygonation. clgeo_cleanbypolygonation.polygon(p, verbose = FALSE)
4 4 clgeo_cleanbypolygonation.polygons p verbose object of class Polygon-class as defined in sp Indicates wether the clean logs have to be printed. Default value is FALSE. Note a list of objects of class Polygon-class as defined in sp, with cleaned geometries. The polygonation method is a tentative alternate method to triangulation to clean geometries. In this method, triangulation is skipped and a re-polygonation algorithm is applied. clgeo_cleanbypolygonation.polygons clgeo_cleanbypolygonation.polygons Function to clean a Polygons object by polygonation clgeo_cleanbypolygonation.polygons(p, verbose = FALSE) p verbose object of class Polygons-class as defined in sp Indicates wether the clean logs have to be printed. Default value is FALSE. Note an object of class Polygons-class as defined in sp, with cleaned geometries. The polygonation method is a tentative alternate method to triangulation to clean geometries. In this method, triangulation is skipped and a re-polygonation algorithm is applied.
5 clgeo_cleanbypolygonation.spatialpolygons clgeo_cleanbypolygonation.spatialpolygons clgeo_cleanbypolygonation.spatialpolygons Function to clean a SpatialPolygons object by polygonation clgeo_cleanbypolygonation.spatialpolygons(sp, verbose = FALSE) sp verbose object extending the Spatial-class as defined in sp Indicates wether the clean logs have to be printed. Default value is FALSE. Note an object extending the Spatial-class as defined in sp, with cleaned geometries. The polygonation method is a tentative alternate method to triangulation to clean geometries. In this method, triangulation is skipped and a re-polygonation algorithm is applied. clgeo_collectionreport clgeo_collectionreport Function to get a spatial data collection validation report. The function outputs a data.frame binding all geometry validity reports, each one produced by clgeo_geometryreport clgeo_collectionreport(sp) sp object extending the Spatial-class as defined in sp
6 6 clgeo_geometryreport an object of class data.frame with the following columns: See Also type eventual rgeos issue valid geometry validity status (according to OGC specifications) issue_type type of geometry issue error_msg catched message when error raised about geometry warning_msg catched message when warning raised about geometry clgeo_geometryreport Examples require(maptools) file <- system.file("extdata", "example.shp", package = "cleangeo") sp <- readshapepoly(file) report <- clgeo_collectionreport(sp) clgeo_geometryreport clgeo_geometryreport Function to get a geometry validation report: The report informs on the following: type eventual rgeos issue valid geometry validity status (according to OGC specifications) issue_type type of geometry issue error_msg catched message when error raised about geometry warning_msg catched message when warning raised about geometry clgeo_geometryreport(spgeom) spgeom object extending the Spatial-class as defined in sp
7 clgeo_isvalid 7 an object of class list giving the following: type eventual rgeos issue valid geometry validity status (according to OGC specifications) issue_type type of geometry issue error_msg catched message when error raised about geometry warning_msg catched message when warning raised about geometry See Also gisvalid clgeo_isvalid clgeo_isvalid Wrapper method to try performing rgeos::gisvalid call and catch eventual warnings or errors (in particular GEOS exceptions). clgeo_isvalid(sp, verbose = FALSE) sp verbose object extending the Spatial-class as defined in sp object of class "logical". Default value is FALSE. an object of class "logical". TRUE if valid, FALSE otherwise
8 8 clgeo_summaryreport Examples require(maptools) file <- system.file("extdata", "example.shp", package = "cleangeo") sp <- readshapepoly(file) clgeo_isvalid(sp) clgeo_summaryreport clgeo_summaryreport Function to get summary of a spatial data collection report returned by clgeo_collectionreport clgeo_summaryreport(report) report a report object as returned byclgeo_collectionreport an object of class table giving the report summary. The summary gives the counting by value for each of the report columns: type eventual rgeos issue valid geometry validity status (according to OGC specifications) issue_type type of geometry issue error_msg catched message when error raised about geometry warning_msg catched message when warning raised about geometry See Also clgeo_collectionreport
9 clgeo_suspiciousfeatures 9 Examples require(maptools) file <- system.file("extdata", "example.shp", package = "cleangeo") sp <- readshapepoly(file) report <- clgeo_collectionreport(sp) clgeo_summaryreport(report) clgeo_suspiciousfeatures clgeo_suspiciousfeatures Function to get the list of index of suspicious geometries within a spatial data collection, given a spatial data collection report returned by the function clgeo_collectionreport clgeo_suspiciousfeatures(report, errors.only = NULL) report errors.only a report object as returned byclgeo_collectionreport an object of class vector giving the types of errors for which the output should bounded. Default value is NULL (i.e. the output will include features for which both errors and errors were raised.). At now, this argument only accepts the error type "ORPHANED_HOLE". an object of class vector giving the numeric indexes of spatial objects tagged as suspicious (i.e. that are not valid acccording to OGC specifications) See Also clgeo_collectionreport
10 10 clgeo_suspiciousfeatures Examples require(maptools) file <- system.file("extdata", "example.shp", package = "cleangeo") sp <- readshapepoly(file) report <- clgeo_collectionreport(sp) nv <- clgeo_suspiciousfeatures(report)
11 Index Topic IsValid Topic clean clgeo_clean, 2 clgeo_cleanbypolygonation.polygon, 3 clgeo_cleanbypolygonation.polygons, 4 clgeo_cleanbypolygonation.spatialpolygons, Topic gisvalid Topic geometry clgeo_clean, 2 clgeo_cleanbypolygonation.polygon, 3 clgeo_cleanbypolygonation.polygons, 4 clgeo_cleanbypolygonation.spatialpolygons, clgeo_collectionreport, clgeo_geometryreport, 6 clgeo_summaryreport, 8 clgeo_suspiciousfeatures, 9 Topic summary clgeo_clean, 2 clgeo_cleanbypolygonation.polygon, 3 clgeo_cleanbypolygonation.polygons, 4 clgeo_cleanbypolygonation.spatialpolygons, clgeo_summaryreport, 8 Topic validity clgeo_clean, 2 clgeo_cleanbypolygonation.polygon, 11 3 clgeo_cleanbypolygonation.polygons, 4 clgeo_cleanbypolygonation.spatialpolygons, clgeo_collectionreport, clgeo_geometryreport, 6 clgeo_summaryreport, 8 clgeo_suspiciousfeatures, 9 cleangeo, 2 cleangeo-package (cleangeo), 2 clgeo_clean, 2 clgeo_cleanbypolygonation.polygon, 3 clgeo_cleanbypolygonation.polygons, 4 clgeo_cleanbypolygonation.spatialpolygons, clgeo_cleanbytriangulation (clgeo_cleanbypolygonation.spatialpolygons), clgeo_collectionreport,, 8, 9 clgeo_geometry (clgeo_geometryreport), 6 clgeo_geometryreport,, 6, 6 clgeo_summaryreport, 8 clgeo_suspiciousfeatures, 9 gisvalid, 7 Polygons, 4 SpatialPolygons,
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Package xtractomatic May 19, 2017 Version 3.3.2 Title Accessing Environmental Data from ERD's ERDDAP Server Contains three functions that access environmental data from ERD's ERDDAP service .
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Type Package Title 'RStudio' Addin for Editing a 'data.frame' Version 0.1.2 Package editdata October 7, 2017 Imports shiny (>= 0.13, miniui (>= 0.1.1, rstudioapi (>= 0.5, DT, tibble An 'RStudio' addin
Package preprosim. July 26, 2016
Package preprosim July 26, 2016 Type Package Title Lightweight Data Quality Simulation for Classification Version 0.2.0 Date 2016-07-26 Data quality simulation can be used to check the robustness of data
Package docxtools. July 6, 2018
Title Tools for R Markdown to Docx Documents Version 0.2.0 Language en-us Package docxtools July 6, 2018 A set of helper functions for using R Markdown to create documents in docx format, especially documents
Package gggenes. R topics documented: November 7, Title Draw Gene Arrow Maps in 'ggplot2' Version 0.3.2
Title Draw Gene Arrow Maps in 'ggplot2' Version 0.3.2 Package gggenes November 7, 2018 Provides a 'ggplot2' geom and helper functions for drawing gene arrow maps. Depends R (>= 3.3.0) Imports grid (>=
Package SEMrushR. November 3, 2018
Type Package Title R Interface to Access the 'SEMrush' API Version 0.1.0 Package SEMrushR November 3, 2018 Implements methods for querying SEO (Search Engine Optimization) and SEM (Search Engine Marketing)
Package lvec. May 24, 2018
Package lvec May 24, 2018 Type Package Title Out of Memory Vectors Version 0.2.2 Date 2018-05-23 Author Jan van der Laan Maintainer Jan van der Laan Core functionality