Package ritis. May 23, 2018
|
|
- Letitia Ross
- 6 years ago
- Views:
Transcription
1 Package ritis May 23, 2018 Title Integrated Taxonomic Information System Client An interface to the Integrated Taxonomic Information System ('ITIS') (< Includes functions to work with the 'ITIS' REST 'API' methods (< as well as the 'Solr' web service (< Version License MIT + file LICENSE URL BugReports VignetteBuilder knitr Imports solrium (>= 1.0.0), crul (>= 0.4.0), jsonlite (>= 1.5), data.table (>= 1.9.6), tibble (>= 1.3.4) Suggests roxygen2 (>= 6.0.1), knitr, testthat, webmockr, vcr RoxygenNote NeedsCompilation no Author Scott Chamberlain [aut, cre] (< Maintainer Scott Chamberlain <myrmecocystus@gmail.com> Repository CRAN Date/Publication :06:51 R topics documented: ritis-package accepted_names any_match_count comment_detail common_names core_metadata coverage credibility
2 2 R topics documented: currency date_data description experts full_record geographic_divisions geographic_values global_species_completeness hierarchy itis_facet itis_group itis_highlight itis_search jurisdiction kingdoms last_change_date lsid other_sources parent_ publications rank_name rank_names record review_year scientific_name search_anymatch search_any_match_paged search_common search_scientific solr synonym_names taxon_authorship terms lsid _by_vernacular_language unacceptability_reason usage vernacular_languages Index 37
3 ritis-package 3 ritis-package Interface to Integrated Taxonomic Information (ITIS) Interface to Integrated Taxonomic Information (ITIS) ritis package API All functions that start with itis_ work with the ITIS Solr API described at gov/solr_documentation.html, which uses the package solrium, and these functions have you use the solrium function interfaces, so you can pass on parameters to the solrium functions - so the solrium docs are important here. All other functions work with the ITIS REST API described at html. For these methods, they can grab data in either JSON or XML format. JSON is the default. We parse the JSON to R native format, either data.frame, character string, or list. You can get JSON as a character string back, or XML as a character string, and then parse yourself with jsonlite or xml2 Author(s) Scott Chamberlain <myrmecocystus@gmail.com> accepted_names Get accepted names from Get accepted names from accepted_names(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default:
4 4 any_match_count Zero row data.frame if the name is accepted, otherwise a data.frame with information on the currently accepted name # TSN accepted - good name accepted_names( = ) # TSN not accepted - input TSN is old name accepted_names( = ) # json accepted_names( = , = TRUE) any_match_count Get any match count. Get any match count. any_match_count(x, = "json", =,...) x text or taxonomic serial number (TSN) (character or numeric) (logical) Return JSON or XML as character string. Required. Default: An integer containing the number of matches the search will return. any_match_count(x = ) any_match_count(x = "dolphin") any_match_count(x = "dolphin", = "xml")
5 comment_detail 5 comment_detail Get comment detail from TSN Get comment detail from TSN comment_detail(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: A data.frame with results. comment_detail(=180543) comment_detail(=180543, = "xml") common_names Get common names from Get common names from common_names(, = "json", =,...)
6 6 core_metadata (logical) Return JSON or XML as character string. Required. Default: a data.frame common_names(=183833) common_names(=183833, = "xml") core_metadata Get core metadata from Get core metadata from core_metadata(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default:
7 coverage 7 # coverage and currrency data core_metadata(=28727) core_metadata(=28727, = "xml") # no coverage or currrency data core_metadata(183671) core_metadata(183671, = "xml") coverage Get coverge from Get coverge from coverage(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: # coverage data coverage(=28727) # no coverage data coverage(526852) coverage(526852, = "xml")
8 8 credibility credibility Get credibility rating from Get credibility rating from credibility_rating(, = "json", =,...) credibility_ratings( = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: Details methods: credibility_rating: Get credibility rating for a credibility_ratings: Get possible credibility ratings a data.frame credibility_rating( = ) credibility_rating(526852, = "xml") credibility_rating(526852, = TRUE) credibility_ratings() credibility_ratings( = "xml") credibility_ratings( = TRUE)
9 currency 9 currency Get currency from Get currency from currency(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: a data.frame # currency data currency(=28727) currency(=28727, = "xml") # no currency dat currency(526852) currency(526852, = TRUE) date_data Get date data from Get date data from date_data(, = "json", =,...)
10 10 description (logical) Return JSON or XML as character string. Required. Default: date_data( = ) date_data(180543, = "xml") date_data(180543, = "json", = TRUE) description Get description of the ITIS service Get description of the ITIS service description( = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: a string, the ITIS web service description description() description( = "xml")
11 experts 11 experts Get expert information for the TSN. Get expert information for the TSN. experts(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: experts( = ) experts(180544, = "xml") experts(180544, = TRUE) full_record Get full record from TSN or lsid Get full record from TSN or lsid full_record( = NULL, lsid = NULL, = "json", =,...) lsid lsid for a taxonomic group (character) (logical) Return JSON or XML as character string. Required. Default:
12 12 geographic_divisions # from full_record( = 50423) full_record( = ) full_record( = ) full_record( = , = "xml") full_record( = , = TRUE) # from lsid full_record(lsid = "urn:lsid:itis.gov:itis_:180543") full_record(lsid = "urn:lsid:itis.gov:itis_:180543") geographic_divisions Get geographic divisions from Get geographic divisions from geographic_divisions(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: geographic_divisions( = ) geographic_divisions( = , = "xml") geographic_divisions( = , = "json", = TRUE)
13 geographic_values 13 geographic_values Get all possible geographic values Get all possible geographic values geographic_values( = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: character vector of geographic names geographic_values() geographic_values( = "xml") geographic_values( = "json", = TRUE) global_species_completeness Get global species completeness from Get global species completeness from global_species_completeness(, = "json", =,...)
14 14 hierarchy (logical) Return JSON or XML as character string. Required. Default: global_species_completeness( = ) global_species_completeness(180541, = "xml") global_species_completeness(180541, = "json", = TRUE) hierarchy Get hierarchy down from Get hierarchy down from hierarchy_down(, = "json", =,...) hierarchy_up(, = "json", =,...) hierarchy_full(, = "json", =,...) Details (logical) Return JSON or XML as character string. Required. Default: Hierarchy methods: hierarchy_down: Get hierarchy down from hierarchy_up: Get hierarchy up from hierarchy_full: Get full hierarchy from
15 itis_facet 15 ## Full down (class Mammalia) hierarchy_down(=179913) ## Full up (genus Agoseris) hierarchy_up(=36485) ## Full hierarchy ### genus Liatris hierarchy_full(=37906) ### get data back hierarchy_full(=37906, = TRUE) ### genus Baetis, get xml back hierarchy_full(100800, = "xml") itis_facet ITIS Solr facet ITIS Solr facet itis_facet(..., proxy = NULL, callopts = list())... passed on to the params parameter of the solrium::solr_facet() function proxy callopts List of arguments for a proxy connection, including one or more of: url, port, username, password, and auth. See crul::proxy() for help, which is used to construct the proxy connection. Curl options passed on to crul::httpclient itis_facet(q = "rank:species", rows = 0, facet.field = "kingdom")$facet_fields x <- itis_facet(q = "hierarchysofar:*$aves$* AND rank:species AND usage:valid", facet.pivot = "namewind,vernacular", facet.limit = -1, facet.mincount = 1, rows = 0) head(x$facet_pivot$ namewind,vernacular )
16 16 itis_highlight itis_group ITIS Solr group search ITIS Solr group search itis_group(..., proxy = NULL, callopts = list())... passed on to the params parameter of the solrium::solr_group() function proxy List of arguments for a proxy connection, including one or more of: url, port, username, password, and auth. See crul::proxy() for help, which is used to construct the proxy connection. callopts Curl options passed on to crul::httpclient x <- itis_group(q = "namewoind:/[a-za-z0-9]*[%20]{1,1}[a-za-z0-9]*/", group.field = 'rank', group.limit = 3) head(x) itis_highlight ITIS Solr highlight ITIS Solr highlight itis_highlight(..., proxy = NULL, callopts = list())... passed on to the params parameter of the solrium::solr_highlight() function proxy List of arguments for a proxy connection, including one or more of: url, port, username, password, and auth. See crul::proxy() for help, which is used to construct the proxy connection. callopts Curl options passed on to crul::httpclient
17 itis_search 17 itis_highlight(q = "rank:species", hl.fl = 'rank', rows=10) itis_search ITIS Solr search ITIS Solr search itis_search(..., proxy = NULL, callopts = list())... passed on to the params parameter of the solrium::solr_search() function proxy List of arguments for a proxy connection, including one or more of: url, port, username, password, and auth. See crul::proxy() for help, which is used to construct the proxy connection. callopts Curl options passed on to crul::httpclient itis_search(q = ":182662") itis_search(q = "namewoind:liquidamber\\%20styraciflua~0.4") # matches only monomials itis_search(q = "namewoind:/[a-za-z0-9]*[%20]{0,0}*/") # matches only binomials itis_search(q = "namewoind:/[a-za-z0-9]*[%20]{1,1}[a-za-z0-9]*/") # matches only trinomials itis_search(q = "namewoind:/[a-za-z0-9]*[%20]{1,1}[a-za-z0-9]*[%20]{1,1}[a-za-z0-9]*/") # matches binomials or trinomials itis_search(q = "namewoind:/[a-za-z0-9]*[%20]{1,1}[a-za-z0-9]*[%20]{0,1}[a-za-z0-9]*/") itis_search(q = "namewoind:poa\\%20annua") itis_search(q = "namewoind:/[a-za-z0-9]*[%20]{0,0}*/", rows = 2) itis_search(q = "namewoind:/[a-za-z0-9]*[%20]{0,0}*/", rows = 200) itis_search(q = "namewoind:/[a-za-z0-9]*[%20]{0,0}*/", fl = c('namewind', ''))
18 18 jurisdiction jurisdiction Get jurisdictional origin from Get jurisdictional origin from jurisdictional_origin(, = "json", =,...) jurisdiction_origin_values( = "json", =,...) jurisdiction_values( = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: Details Jurisdiction methods: jurisdictional_origin: Get jurisdictional origin from jurisdiction_origin_values: Get jurisdiction origin values jurisdiction_values: Get all possible jurisdiction values jurisdictional_origin: data.frame jurisdiction_origin_values: data.frame jurisdiction_values: character vector jurisdictional_origin(=180543) jurisdictional_origin(=180543, = "xml") jurisdiction_origin_values() jurisdiction_values()
19 kingdoms 19 kingdoms Get kingdom names from Get kingdom names from kingdom_name(, = "json", =,...) kingdom_names( = "json", =,...) Details (logical) Return JSON or XML as character string. Required. Default: kingdom_name: Get kingdom name for a TSN kingdom_names: Get all possible kingdom names kingdom_name(202385) kingdom_name(202385, = "xml") kingdom_names() last_change_date Provides the date the ITIS database was last updated Provides the date the ITIS database was last updated last_change_date( = "json", =,...)
20 20 lsid2 (logical) Return JSON or XML as character string. Required. Default: character value with a date last_change_date() last_change_date( = "xml") lsid2 Gets the TSN corresponding to the LSID, or an empty result if there is no match. Gets the TSN corresponding to the LSID, or an empty result if there is no match. lsid2(lsid, = "json", =,...) lsid (character) lsid for a taxonomic group. Required. (logical) Return JSON or XML as character string. Required. Default: lsid2(lsid="urn:lsid:itis.gov:itis_:28726") lsid2(lsid="urn:lsid:itis.gov:itis_:28726", = "xml") lsid2("urn:lsid:itis.gov:itis_:0") lsid2("urn:lsid:itis.gov:itis_:0", = "xml")
21 other_sources 21 other_sources Returns a list of the other sources used for the TSN. Returns a list of the other sources used for the TSN. other_sources(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: other_sources(=182662) other_sources(=182662, = "xml") parent_ Returns the parent TSN for the entered TSN. Returns the parent TSN for the entered TSN. parent_(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default:
22 22 publications a data.frame parent_( = ) parent_( = , = TRUE) parent_( = , = "xml") publications Returns a list of the pulications used for the TSN. Returns a list of the pulications used for the TSN. publications(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: a data.frame publications( = 70340) publications( = 70340, = "xml") publications( = 70340, verbose = TRUE)
23 rank_name 23 rank_name Returns the kingdom and rank information for the TSN. Returns the kingdom and rank information for the TSN. rank_name(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: a data.frame, with rank name and other info rank_name( = ) rank_names Provides a list of all the unique rank names contained in the database and their kingdom and rank ID values. Provides a list of all the unique rank names contained in the database and their kingdom and rank ID values. rank_names( = "json", =,...)
24 24 record (logical) Return JSON or XML as character string. Required. Default: a data.frame, with columns: kingdomname rankid rankname rank_names() record Gets a record from an LSID Gets a record from an LSID record(lsid, = "json", =,...) lsid Details lsid for a taxonomic group (character). Required. (logical) Return JSON or XML as character string. Required. Default: Gets the partial ITIS record for the TSN in the LSID, found by comparing the TSN in the search key to the TSN field. Returns an empty result set if there is no match or the TSN is invalid.
25 review_year 25 a data.frame record(lsid = "urn:lsid:itis.gov:itis_:180543") review_year Returns the review year for the TSN. Returns the review year for the TSN. review_year(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: a data.frame review_year( = )
26 26 search_anymatch scientific_name Returns the scientific name for the TSN. Also returns the component parts (names and indicators) of the scientific name. Returns the scientific name for the TSN. Also returns the component parts (names and indicators) of the scientific name. scientific_name(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: a data.frame scientific_name( = ) search_anymatch Search for any match Search for any match search_anymatch(x, = "json", =,...)
27 search_any_match_paged 27 x text or taxonomic serial number (TSN) (character or numeric) (logical) Return JSON or XML as character string. Required. Default: a data.frame See Also search_any_match_paged search_anymatch(x = ) search_anymatch(x = "dolphin") search_any_match_paged Search for any matched page Search for any matched page search_any_match_paged(x, pagesize = NULL, pagenum = NULL, ascend = NULL, = "json", =,...) x pagesize pagenum ascend text or taxonomic serial number (TSN) (character or numeric) An integer containing the page size (numeric) An integer containing the page number (numeric) A boolean containing true for ascending sort order or false for descending (logical) (logical) Return JSON or XML as character string. Required. Default:
28 28 search_common See Also a data.frame a data.frame search_anymatch search_any_match_paged(x=202385, pagesize=100, pagenum=1, ascend=) search_any_match_paged(x="zy", pagesize=100, pagenum=1, ascend=) search_common Search for by common name Search for by common name search_common(x, from = "all", = "json", =,...) x from Details text or taxonomic serial number (TSN) (character or numeric) (character) One of "all", "begin", or "end". See Details. (logical) Return JSON or XML as character string. Required. Default: The from parameter: all - Search against the searchbycommonname API route, which searches entire name string begin - Search against the searchbycommonnamebeginswith API route, which searches for a match at the beginning of a name string end - Search against the searchbycommonnameendswith API route, which searches for a match at the end of a name string
29 search_scientific 29 a data.frame See Also search_scientific() search_common("american bullfrog") search_common("ferret-badger") search_common("polar bear") # comparison: all, begin, end search_common("inch") search_common("inch", from = "begin") search_common("inch", from = "end") # end search_common("snake", from = "end") search_scientific Search by scientific name Search by scientific name search_scientific(x, = "json", =,...) x text or taxonomic serial number (TSN) (character or numeric) (logical) Return JSON or XML as character string. Required. Default: a data.frame
30 30 synonym_names See Also search_common search_scientific("tardigrada") search_scientific("quercus douglasii") solr ITIS Solr Methods ITIS provides access to their data via their Solr service described at documentation.html. This is a powerful interace to ITIS data as you have access to a very flexible query interface. Functions itis_search() - Search itis_group() - Group itis_highlight() - Highlight itis_facet() - Facet synonym_names Returns a list of the synonyms (if any) for the TSN. Returns a list of the synonyms (if any) for the TSN. synonym_names(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default:
31 taxon_authorship 31 a data.frame synonym_names(=183671) # not accepted synonym_names(=526852) # accepted taxon_authorship Returns the author information for the TSN. Returns the author information for the TSN. taxon_authorship(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: a data.frame taxon_authorship( = )
32 32 terms terms Get ITIS terms, i.e., s, authors, common names, and scientific names. Get ITIS terms, i.e., s, authors, common names, and scientific names. terms(query, what = "both", = "json", =,...) query what One or more common or scientific names, or partial names One of both (search common and scientific names), common (search just common names), or scientific (search just scientific names) (logical) Return JSON or XML as character string. Required. Default: # Get terms searching both common and scientific names terms(query='bear') # Get terms searching just common names terms(query='tarweed', "common") # Get terms searching just scientific names terms(query='poa annua', "scientific") # many at once terms(query=c('poa annua', 'Pinus contorta'), "scientific")
33 2lsid 33 2lsid Gets the unique LSID for the TSN, or an empty result if there is no match. Gets the unique LSID for the TSN, or an empty result if there is no match. 2lsid(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: a character string, an LSID, or NULL if nothing found 2lsid( = ) 2lsid( = ) 2lsid(155166, = TRUE) 2lsid(155166, = "xml") _by_vernacular_language Get by vernacular language Get by vernacular language _by_vernacular_language(language, = "json", =,...)
34 34 unacceptability_reason language A string containing the language. This is a language string, not the international language code (character) (logical) Return JSON or XML as character string. Required. Default: a data.frame _by_vernacular_language(language = "french") unacceptability_reason Returns the unacceptability reason, if any, for the TSN. Returns the unacceptability reason, if any, for the TSN. unacceptability_reason(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: unacceptability_reason( = )
35 usage 35 usage Returns the usage information for the TSN. Returns the usage information for the TSN. usage(, = "json", =,...) (logical) Return JSON or XML as character string. Required. Default: usage( = ) usage( = , = TRUE) usage( = , = "xml") vernacular_languages Provides a list of the unique languages used in the vernacular table. Provides a list of the unique languages used in the vernacular table. vernacular_languages( = "json", =,...) (logical) Return JSON or XML as character string. Required. Default:
36 36 vernacular_languages a character vector of verncular names vernacular_languages()
37 Index accepted_names, 3 any_match_count, 4 comment_detail, 5 common_names, 5 core_metadata, 6 coverage, 7 credibility, 8 credibility_rating (credibility), 8 credibility_ratings (credibility), 8 crul::httpclient, 3 35 crul::proxy(), currency, 9 date_data, 9 description, 10 experts, 11 full_record, 11 geographic_divisions, 12 geographic_values, 13 global_species_completeness, 13 hierarchy, 14 hierarchy_down (hierarchy), 14 hierarchy_full (hierarchy), 14 hierarchy_up (hierarchy), 14 itis_facet, 15 itis_facet(), 30 itis_group, 16 itis_group(), 30 itis_highlight, 16 itis_highlight(), 30 itis_search, 17 itis_search(), 30 jurisdiction, 18 jurisdiction_origin_values (jurisdiction), 18 jurisdiction_values (jurisdiction), 18 jurisdictional_origin (jurisdiction), 18 kingdom_name (kingdoms), 19 kingdom_names (kingdoms), 19 kingdoms, 19 last_change_date, 19 lsid2, 20 other_sources, 21 parent_, 21 publications, 22 rank_name, 23 rank_names, 23 record, 24 review_year, 25 ritis (ritis-package), 3 ritis-package, 3 scientific_name, 26 search_any_match_paged, 27, 27 search_anymatch, 26, 28 search_common, 28, 30 search_scientific, 29 search_scientific(), 29 solr, 30 solrium::solr_facet(), 15 solrium::solr_group(), 16 solrium::solr_highlight(), 16 solrium::solr_search(), 17 synonym_names, 30 taxon_authorship, 31 terms, 32 2lsid, 33 _by_vernacular_language, 33 37
38 38 INDEX unacceptability_reason, 34 usage, 35 vernacular_languages, 35
Package rdryad. June 18, 2018
Type Package Title Access for Dryad Web Services Package rdryad June 18, 2018 Interface to the Dryad ``Solr'' API, their ``OAI-PMH'' service, and fetch datasets. Dryad () is a curated
More informationPackage wikitaxa. December 21, 2017
Title Taxonomic Information from 'Wikipedia' Package wikitaxa December 21, 2017 'Taxonomic' information from 'Wikipedia', 'Wikicommons', 'Wikispecies', and 'Wikidata'. Functions included for getting taxonomic
More informationPackage rbraries. April 18, 2018
Title Interface to the 'Libraries.io' API Package rbraries April 18, 2018 Interface to the 'Libraries.io' API (). 'Libraries.io' indexes data from 36 different package managers
More informationPackage taxizedb. June 21, 2017
Type Package Package taxizedb June 21, 2017 Title Tools for Working with 'Taxonomic' Databases Tools for working with 'taxonomic' databases, including utilities for downloading databases, loading them
More informationPackage pangaear. January 3, 2018
Title Client for the 'Pangaea' Database Package pangaear January 3, 2018 Tools to interact with the 'Pangaea' Database (), including functions for searching for data, fetching 'datasets'
More informationPackage rif. May 16, 2017
Package rif May 16, 2017 Title Client for 'Neuroscience' Information Framework 'APIs' Client for 'Neuroscience' Information Framework ('NIF') 'APIs' (; ).
More informationPackage brranching. R topics documented:
Package brranching June 19, 2018 Title Fetch 'Phylogenies' from Many Sources Includes methods for fetching 'phylogenies' from a variety of sources, currently includes 'Phylomatic' (),
More informationPackage dkanr. July 12, 2018
Title Client for the 'DKAN' API Version 0.1.2 Package dkanr July 12, 2018 Provides functions to facilitate access to the 'DKAN' API (), including
More informationPackage crul. October 3, 2017
Title HTTP Client Package crul October 3, 2017 A simple HTTP client, with tools for making HTTP requests, and mocking HTTP requests. The package is built on R6, and takes inspiration from Ruby's 'faraday'
More informationPackage mapr. March 21, 2018
Title Visualize Species Occurrence Data Package mapr March 21, 2018 Utilities for visualizing species occurrence data. Includes functions to visualize occurrence data from 'spocc', 'rgbif', and other packages.
More informationPackage mapr. April 11, 2017
Title Visualize Species Occurrence Data Package mapr April 11, 2017 Utilities for visualizing species occurrence data. Includes functions to visualize occurrence data from 'spocc', 'rgbif', and other packages.
More informationPackage rwars. January 14, 2017
Package rwars January 14, 2017 Type Package Title R Client for the Star Wars API Provides functions to retrieve and reformat data from the 'Star Wars' API (SWAPI) . Version 1.0.0 Date
More informationPackage cattonum. R topics documented: May 2, Type Package Version Title Encode Categorical Features
Type Package Version 0.0.2 Title Encode Categorical Features Package cattonum May 2, 2018 Functions for dummy encoding, frequency encoding, label encoding, leave-one-out encoding, mean encoding, median
More informationPackage fastdummies. January 8, 2018
Type Package Package fastdummies January 8, 2018 Title Fast Creation of Dummy (Binary) Columns and Rows from Categorical Variables Version 1.0.0 Description Creates dummy columns from columns that have
More informationPackage nodbi. August 1, 2018
Title 'NoSQL' Database Connector Package nodbi August 1, 2018 Simplified document database manipulation and analysis, including support for many 'NoSQL' databases, including document databases ('Elasticsearch',
More informationPackage githubinstall
Type Package Version 0.2.2 Package githubinstall February 18, 2018 Title A Helpful Way to Install R Packages Hosted on GitHub Provides an helpful way to install packages hosted on GitHub. URL https://github.com/hoxo-m/githubinstall
More informationPackage webmockr. May 23, 2018
Package webmockr May 23, 2018 Title Stubbing and Setting Expectations on 'HTTP' Requests Stubbing and setting expectations on 'HTTP' requests. Includes tools for stubbing 'HTTP' requests, including expected
More informationPackage repec. August 31, 2018
Type Package Title Access RePEc Data Through API Version 0.1.0 Package repec August 31, 2018 Utilities for accessing RePEc (Research Papers in Economics) through a RESTful API. You can request a and get
More informationPackage loggit. April 9, 2018
Title Effortless Exception Logging Package loggit April 9, 2018 A very simple and easy-to-use set of suspiciously-familiar functions. 'loggit' provides a set of wrappings for base R's message(), warning(),
More informationPackage goodpractice
Title Advice on R Package Building Version 1.0.2 Package goodpractice May 2, 2018 Give advice about good practices when building R packages. Advice includes functions and syntax to avoid, package structure,
More informationPackage rgho. R topics documented: January 18, 2017
Package rgho January 18, 2017 Title Access WHO Global Health Observatory Data from R Version 1.0.1 Author Antoine Filipovic-Pierucci [aut,cre] Maintainer Antoine Filipovic-Pierucci
More informationPackage geojsonsf. R topics documented: January 11, Type Package Title GeoJSON to Simple Feature Converter Version 1.3.
Type Package Title GeoJSON to Simple Feature Converter Version 1.3.0 Date 2019-01-11 Package geojsonsf January 11, 2019 Converts Between GeoJSON and simple feature objects. License GPL-3 Encoding UTF-8
More informationPackage patentsview. July 12, 2017
Type Package Title An R Client to the PatentsView API Version 0.1.0 Encoding UTF-8 Package patentsview July 12, 2017 Provides functions to simplify the PatentsView API ()
More informationPackage messaging. May 27, 2018
Type Package Package messaging May 27, 2018 Title Conveniently Issue Messages, Warnings, and Errors Version 0.1.0 Description Provides tools for creating and issuing nicely-formatted text within R diagnostic
More informationPackage calpassapi. August 25, 2018
Title R Interface to Access CalPASS API Version 0.0.1 Package calpassapi August 25, 2018 Description Implements methods for querying data from CalPASS using its API. CalPASS Plus. MMAP API V1. .
More informationPackage gtrendsr. August 4, 2018
Type Package Title Perform and Display Google Trends Queries Version 1.4.2 Date 2018-08-03 Package gtrendsr August 4, 2018 An interface for retrieving and displaying the information returned online by
More informationPackage rgdax. January 7, 2019
Type Package Package rgdax January 7, 2019 Title Wrapper for 'Coinbase Pro (GDAX)' Cryptocurrency Exchange Version 1.0.0 Maintainer Dheeraj Agarwal Allow access to both public
More informationPackage ECctmc. May 1, 2018
Type Package Package ECctmc May 1, 2018 Title Simulation from Endpoint-Conditioned Continuous Time Markov Chains Version 0.2.5 Date 2018-04-30 URL https://github.com/fintzij/ecctmc BugReports https://github.com/fintzij/ecctmc/issues
More informationPackage jug. April 13, 2017
Package Type Package Title A Simple Web Framework for R Version 0.1.7 April 13, 2017 URL https://github.com/bart6114/ is a web framework aimed at easily building APIs. It is mostly aimed at exposing R
More informationPackage lumberjack. R topics documented: July 20, 2018
Package lumberjack July 20, 2018 Maintainer Mark van der Loo License GPL-3 Title Track Changes in Data LazyData no Type Package LazyLoad yes A function composition ('pipe') operator
More informationPackage postal. July 27, 2018
Type Package Title United States Postal Service API Interface Version 0.1.0 Package postal July 27, 2018 Author Amanda Dobbyn Maintainer Amanda Dobbyn
More informationPackage SEMrushR. November 3, 2018
Type Package Title R Interface to Access the 'SEMrush' API Version 0.1.0 Package SEMrushR November 3, 2018 Implements methods for querying SEO (Search Engine Optimization) and SEM (Search Engine Marketing)
More informationPackage tabulizer. June 7, 2018
Type Package Package tabulizer June 7, 2018 Title Bindings for 'Tabula' PDF Table Extractor Library Version 0.2.2 Maintainer Tom Paskhalis Bindings for the 'Tabula'
More informationPackage SNPediaR. April 9, 2019
Title Query data from SNPedia Version 1.8.0 Date 2015-09-26 Package SNPediaR April 9, 2019 Description SNPediaR provides some tools for downloading and parsing data from the SNPedia web site .
More informationPackage WikipediR. February 5, 2017
Type Package Title A MediaWiki API Wrapper Version 1.5.0 Date 2017-02-04 Author Oliver Keyes [aut, cre], Brock Tilbert [ctb] Package WikipediR February 5, 2017 Maintainer Oliver Keyes
More informationPackage fitbitscraper
Title Scrapes Data from Fitbit Version 0.1.8 Package fitbitscraper April 14, 2017 Author Cory Nissen [aut, cre] Maintainer Cory Nissen Scrapes data from Fitbit
More informationPackage fingertipsr. May 25, Type Package Version Title Fingertips Data for Public Health
Type Package Version 0.1.7 Title Fingertips Data for Public Health Package fingertipsr May 25, 2018 Fingertips () contains data for many indicators of public health in England.
More informationPackage datasets.load
Title Interface for Loading Datasets Version 0.1.0 Package datasets.load December 14, 2016 Visual interface for loading datasets in RStudio from insted (unloaded) s. Depends R (>= 3.0.0) Imports shiny,
More informationPackage geoops. March 19, 2018
Type Package Package geoops March 19, 2018 Title 'GeoJSON' Topology Calculations and Operations Tools for doing calculations and manipulations on 'GeoJSON', a 'geospatial' data interchange format ().
More informationPackage guardianapi. February 3, 2019
Package guardianapi February 3, 2019 Title Access 'The Guardian' Newspaper Open Data API Version 0.1.0 Access to the 'Guardian' open API , containing all articles
More informationPackage elasticsearchr
Type Package Version 0.2.2 Package elasticsearchr March 29, 2018 Title A Lightweight Interface for Interacting with Elasticsearch from R Date 2018-03-29 Author Alex Ioannides Maintainer Alex Ioannides
More informationPackage robotstxt. November 12, 2017
Date 2017-11-12 Type Package Package robotstxt November 12, 2017 Title A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler' Permissions Checker Version 0.5.2 Provides functions to download and parse 'robots.txt'
More informationPackage solrium. December 13, 2018
Title General Purpose R Interface to 'Solr' Package solrium December 13, 2018 Provides a set of functions for querying and parsing data from 'Solr' () 'endpoints' (local
More informationPackage pdfsearch. July 10, 2018
Type Package Version 0.2.3 License MIT + file LICENSE Title Search Tools for PDF Files Package pdfsearch July 10, 2018 Includes functions for keyword search of pdf files. There is also a wrapper that includes
More informationPackage rzeit2. January 7, 2019
Type Package Title Client for the ZEIT ONLINE Content API Version 0.2.3 Package rzeit2 January 7, 2019 Interface to gather newspaper articles from 'DIE ZEIT' and 'ZEIT ONLINE', based on a multilevel query
More informationPackage condusco. November 8, 2017
Type Package Package condusco November 8, 2017 Title Query-Driven Pipeline Execution and Query Templates Version 0.1.0 Author Roland Stevenson Maintainer Roland Stevenson Description
More informationPackage canvasxpress
Version 1.18.2 Package canvasxpress Title Visualization Package for CanvasXpress in R January 19, 2018 Enables creation of visualizations using the CanvasXpress framework in R. CanvasXpress is a standalone
More informationPackage virustotal. May 1, 2017
Title R Client for the VirusTotal API Version 0.2.1 Maintainer Gaurav Sood Package virustotal May 1, 2017 Use VirusTotal, a Google service that analyzes files and URLs for viruses,
More informationPackage bigreadr. R topics documented: August 13, Version Date Title Read Large Text Files
Version 0.1.3 Date 2018-08-12 Title Read Large Text Files Package bigreadr August 13, 2018 Read large text s by splitting them in smaller s. License GPL-3 Encoding UTF-8 LazyData true ByteCompile true
More informationPackage validara. October 19, 2017
Type Package Title Validate Brazilian Administrative Registers Version 0.1.1 Package validara October 19, 2017 Maintainer Gustavo Coelho Contains functions to validate administrative
More informationPackage facerec. May 14, 2018
Package facerec Type Package Title An Interface for Face Recognition Version 0.1.0 Date 2018-05-14 May 14, 2018 URL https://github.com/methodds/facerec BugReports https://github.com/methodds/facerec/issues
More informationPackage internetarchive
Type Package Title An API Client for the Internet Archive Package internetarchive December 8, 2016 Search the Internet Archive, retrieve metadata, and download files. Version 0.1.6 Date 2016-12-08 License
More informationPackage bigqueryr. June 8, 2018
Package bigqueryr June 8, 2018 Title Interface with Google BigQuery with Shiny Compatibility Version 0.4.0 Interface with 'Google BigQuery', see for more information.
More informationPackage influxdbr. January 10, 2018
Type Package Title R Interface to InfluxDB Version 0.14.2 Date 2018-01-10 Package influxdbr January 10, 2018 An R interface to the InfluxDB time series database . This package
More informationPackage postgistools
Type Package Package postgistools March 28, 2018 Title Tools for Interacting with 'PostgreSQL' / 'PostGIS' Databases Functions to convert geometry and 'hstore' data types from 'PostgreSQL' into standard
More informationPackage reconstructr
Type Package Title Session Reconstruction and Analysis Version 2.0.2 Date 2018-07-26 Author Oliver Keyes Package reconstructr July 26, 2018 Maintainer Oliver Keyes Functions to reconstruct
More informationPackage nlgeocoder. October 8, 2018
Title Geocoding for the Netherlands Version 0.1.3 Package nlgeocoder October 8, 2018 R interface to the open location server API of 'Publieke Diensten Op de Kaart' (). It offers geocoding,
More informationPackage censusr. R topics documented: June 14, Type Package Title Collect Data from the Census API Version 0.0.
Type Package Title Collect Data from the Census API Version 0.0.3 Date 2017-06-13 Package censusr June 14, 2017 Use the US Census API to collect summary data tables for SF1 and ACS datasets at arbitrary
More informationPackage gtrendsr. October 19, 2017
Type Package Title Perform and Display Google Trends Queries Version 1.4.0 Date 2017-10-19 Package gtrendsr October 19, 2017 An interface for retrieving and displaying the information returned online by
More informationPackage farver. November 20, 2018
Type Package Package farver November 20, 2018 Title Vectorised Colour Conversion and Comparison Version 1.1.0 Date 2018-11-20 Maintainer Thomas Lin Pedersen The encoding of colour
More informationPackage statsdk. September 30, 2017
Type Package Title A Wrapper for the API of Statistics Denmark Version 0.1.1 Author Mikkel Freltoft Krogsholm Package statsdk September 30, 2017 Maintainer Mikkel Freltoft Krogsholm Makes
More informationPackage censusapi. August 19, 2018
Version 0.4.1 Title Retrieve Data from the Census APIs Package censusapi August 19, 2018 A wrapper for the U.S. Census Bureau APIs that returns data frames of Census data and metadata. Available datasets
More informationPackage BiocManager. November 13, 2018
Package BiocManager November 13, 2018 Title Access the Bioconductor Project Package Repository A convenient tool to install and update Bioconductor packages. Version 1.30.4 Depends R (>= 3.5.0) Imports
More informationPackage available. November 17, 2017
Package available November 17, 2017 Title Check if the Title of a Package is Available, Appropriate and Interesting Version 1.0.0 Check if a given package is available to use. It checks the 's validity.
More informationPackage labelvector. July 28, 2018
Title Label Attributes for Atomic Vectors Version 0.1.0 Package labelvector July 28, 2018 Labels are a common construct in statistical software providing a human readable description of a variable. While
More informationPackage httpcache. October 17, 2017
Package httpcache October 17, 2017 Type Package Title Query Cache for HTTP Clients In order to improve performance for HTTP API clients, 'httpcache' provides simple tools for caching and invalidating cache.
More informationPackage RODBCext. July 31, 2017
Version 0.3.1 Package RODBCext July 31, 2017 Title Parameterized Queries Extension for RODBC An extension for RODBC package adding support for parameterized queries. URL https://github.com/zozlak/rodbcext
More informationPackage opencage. January 16, 2018
Package opencage January 16, 2018 Type Package Title Interface to the OpenCage API Version 0.1.4 Tool for accessing the OpenCage API, which provides forward geocoding (from placename to longitude and latitude)
More informationPackage bigqueryr. October 23, 2017
Package bigqueryr October 23, 2017 Title Interface with Google BigQuery with Shiny Compatibility Version 0.3.2 Interface with 'Google BigQuery', see for more information.
More informationPackage dataverse. June 15, 2017
Version 0.2.0 Date 2017-06-15 Title Client for Dataverse 4 Repositories Imports stats, utils, httr, xml2, jsonlite Suggests knitr, testthat, UNF, foreign Package dataverse June 15, 2017 Provides access
More informationPackage cloudml. June 12, 2018
Package cloudml June 12, 2018 Title Interface to the Google Cloud Machine Learning Platform Version 0.5.1 Interface to the Google Cloud Machine Learning Platform , which
More informationPackage crossword.r. January 19, 2018
Date 2018-01-13 Type Package Title Generating s from Word Lists Version 0.3.5 Author Peter Meissner Package crossword.r January 19, 2018 Maintainer Peter Meissner Generate crosswords
More informationPackage aws.transcribe
Type Package Title Client for 'AWS Transcribe' Version 0.1.2 Date 2018-04-09 Package aws.transcribe April 9, 2018 Client for 'AWS Transcribe' , a cloud
More informationPackage rsdmx. September 21, 2018
Version 0.5-13 Date 2018-09-21 Title Tools for Reading SDMX Data and Metadata Package rsdmx September 21, 2018 Maintainer Emmanuel Blondel Depends R (>= 2.15) Imports methods,
More informationPackage semver. January 6, 2017
Type Package Title 'Semantic Versioning V2.0.0' Parser Version 0.2.0 Package semver January 6, 2017 Tools and functions for parsing, rendering and operating on semantic version strings. Semantic versioning
More informationPackage preprosim. July 26, 2016
Package preprosim July 26, 2016 Type Package Title Lightweight Data Quality Simulation for Classification Version 0.2.0 Date 2016-07-26 Data quality simulation can be used to check the robustness of data
More informationPackage rsppfp. November 20, 2018
Package rsppfp November 20, 2018 Title R's Shortest Path Problem with Forbidden Subpaths Version 1.0.3 Maintainer Melina Vidoni An implementation of functionalities
More informationPackage paleobiodb. September 2, 2016
Package paleobiodb September 2, 2016 Includes 19 functions to wrap each endpoint of the PaleobioDB API, plus 8 functions to visualize and process the fossil data. The API documentation for the Paleobiology
More informationPackage qualmap. R topics documented: September 12, Type Package
Type Package Package qualmap September 12, 2018 Title Opinionated Approach for Digitizing Semi-Structured Qualitative GIS Data Version 0.1.1 Provides a set of functions for taking qualitative GIS data,
More informationPackage clipr. June 23, 2018
Type Package Title Read and Write from the System Clipboard Version 0.4.1 Package clipr June 23, 2018 Simple utility functions to read from and write to the Windows, OS X, and X11 clipboards. Imports utils
More informationPackage urlshortener
Type Package Package urlshortener December 5, 2016 Title R Wrapper for the 'Bit.ly', 'Goo.gl' and 'Is.gd' URL Shortening Services Allows using different URL shortening services, which also provide expanding
More informationPackage deductive. June 2, 2017
Package deductive June 2, 2017 Maintainer Mark van der Loo License GPL-3 Title Data Correction and Imputation Using Deductive Methods LazyData no Type Package LazyLoad yes Attempt
More informationPackage profvis. R topics documented:
Package profvis January 14, 2017 Title Interactive Visualizations for Profiling R Code Version 0.3.3 Interactive visualizations for profiling R code. Depends R (>= 3.0) Imports htmlwidgets (>= 0.3.2),
More informationPackage projector. February 27, 2018
Package projector February 27, 2018 Title Project Dense Vectors Representation of Texts on a 2D Plan Version 0.0.2 Date 2018-02-27 Maintainer Michaël Benesty Display dense vector representation
More informationPackage geojson. November 8, 2017
Type Package Title Classes for 'GeoJSON' Package geojson November 8, 2017 Classes for 'GeoJSON' to make working with 'GeoJSON' easier. Includes S3 classes for 'GeoJSON' classes with brief summary output,
More informationPackage taxonomizr. March 9, 2017
Package taxonomizr March 9, 2017 Maintainer Scott Sherrill-Mix License GPL-2 Title Functions to Work with NCBI Accessions and Taxonomy Type Package LazyLoad yes Author Scott Sherrill-Mix
More informationPackage oec. R topics documented: May 11, Type Package
Type Package Package oec May 11, 2018 Title Observatory of Economic Complexity API Wrapper and Utility Program Version 2.7.8 Date 2018-06-11 Maintainer Mauricio Vargas S. URL https://cran.r-project.org/package=oec
More informationPackage scrubr. August 29, 2016
Type Package Title Clean Biological Occurrence Records Package scrubr August 29, 2016 Clean biological occurrence records. Includes functionality for cleaning based on various aspects of spatial coordinates,
More informationPackage climber. R topics documented:
Package climber November 19, 2016 Title Calculate Average Minimal Depth of a Maximal Subtree for 'ranger' Package Forests Version 0.0.1 Calculates first, and second order, average minimal depth of a maximal
More informationPackage RWildbook. April 6, 2018
Type Package Package RWildbook April 6, 2018 Title Interface for the 'Wildbook' Wildlife Data Management Framework Version 0.9.3 Provides an interface with the 'Wildbook' mark-recapture ecological database
More informationPackage tidytransit. March 4, 2019
Type Package Package tidytransit March 4, 2019 Title Read, Validate, Analyze, and Map Files in the General Transit Feed Specification Version 0.3.8 Read General Transit Feed Specification (GTFS) zipfiles
More informationPackage jpmesh. December 4, 2017
Type Package Title Utilities for Japanese Mesh Code Version 1.0.1 Package jpmesh December 4, 2017 Maintainer Shinya Uryu Helpful functions for using mesh code (80km to 125m) data
More informationPackage gcite. R topics documented: February 2, Type Package Title Google Citation Parser Version Date Author John Muschelli
Type Package Title Google Citation Parser Version 0.9.2 Date 2018-02-01 Author John Muschelli Package gcite February 2, 2018 Maintainer John Muschelli Scrapes Google Citation pages
More informationPackage docxtools. July 6, 2018
Title Tools for R Markdown to Docx Documents Version 0.2.0 Language en-us Package docxtools July 6, 2018 A set of helper functions for using R Markdown to create documents in docx format, especially documents
More informationPackage widyr. August 14, 2017
Type Package Title Widen, Process, then Re-Tidy Data Version 0.1.0 Package widyr August 14, 2017 Encapsulates the pattern of untidying data into a wide matrix, performing some processing, then turning
More informationPackage ezknitr. September 16, 2016
Package ezknitr September 16, 2016 Title Avoid the Typical Working Directory Pain When Using 'knitr' Version 0.6 An extension of 'knitr' that adds flexibility in several ways. One common source of frustration
More informationPackage datapasta. January 24, 2018
Title R Tools for Data Copy-Pasta Version 3.0.0 Package datapasta January 24, 2018 RStudio addins and R functions that make copy-pasting vectors and tables to text painless. Depends R (>= 3.3.0) Suggests
More informationPackage ggimage. R topics documented: November 1, Title Use Image in 'ggplot2' Version 0.0.7
Title Use Image in 'ggplot2' Version 0.0.7 Package ggimage November 1, 2017 Supports image files and graphic objects to be visualized in 'ggplot2' graphic system. Depends R (>= 3.3.0), ggplot2 Imports
More informationPackage ecoseries. R topics documented: September 27, 2017
Package ecoseries September 27, 2017 Title An R Interface to Brazilian Central Bank and Sidra APIs and the IPEA Data Version 0.1.5 Date 2017-09-27 Maintainer Fernando Teixeira
More informationPackage spelling. December 18, 2017
Title Tools for Spell Checking in R Version 1.1 Package spelling December 18, 2017 Spell checking common document formats including latex, markdown, manual pages, and description files. Includes utilities
More information