Guillimin HPC Users Meeting June 16, 2016

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1 Guillimin HPC Users Meeting June 16, 2016 McGill University / Calcul Québec / Compute Canada Montréal, QC Canada

2 Compute Canada News System Status Software Updates Training News Special Topic Outline Using Globus for Transferring Data Efficiently - New Globus Web Portal Interface 2

3 Compute Canada News Compute Canada Town Hall Meeting at HPCS 2016 June 21st, 12:15pm MDT = 2:15pm EDT Watch online via live webcast or in person at HPCS To register, visit the session Eventbrite page See also: computecanada.eventbrite.ca 3

4 System Status Unscheduled Power outage May 25 Full ETS campus and neighbouring area affected Wednesday May 25: 5:05pm - 6:00pm: power outage 6:30pm: bringing back critical services 9:00pm: GPFS filesystem checks and corrections started Thursday May 26: 10:00pm: testing job submission and GPFS I/O Midnight: Guillimin back online Friday May 27: 3:00am: Some license services are restarted 6:00pm: Most VMs are back online Network interruption June 15 (~2:44-8:15am) Communication issue between two core network switches, affecting user login access and internal communications - root cause under investigation 4

5 Storage Status Reminder about temporary scratch space on /sb: No more /sb/scratch spaces since May 18 Make sure your job scripts are using $SCRATCH instead of /sb/scratch/$user Space Management /gs is almost full: 96% used, 149 TB left (as of June 15) For better space management we continue to progressively migrate cold data from disk to tape Metadata remains on disk Users can still access their files through usual methods, but with an increased latency Storage space is a precious resource - manage it wisely! delete temporary files, compress large files not frequently accessed, tar many smaller files into 5

6 Software Update About the Lmod/EasyBuild based module structure: Default since March 22, 2016 New Installations MATLAB Distributed Computing Server (MDCS) license file (for all users, 64 licenses): R201{2, 3, 4, 5}{a, b} ImageMagick/ (foss/2015b, iomkl/2015b) XZ/5.2.2 (foss/2016b) (file compression) bzip2/1.0.6 (foss/2016b) (file compression) Siesta/4.0-b2 (iomkl/2015b) (electronic struct/mol. dyn.) HDF5/ serial (iomkl/2015b) GCC/

7 Training News See Training and Outreach at for our calendar of training and workshops for 2016 and for links to registration pages Upcoming events: calculquebec.eventbrite.ca June 21 - Introduction to GPU (CUDA) (McGill) June 22 - Simplifying Life with GPU Libraries (U. de Montréal) July - Suggestions for training? Please let us know! All materials from previous workshops are available online: wiki.calculquebec.ca/w/formations/en Recently completed: June ARC Spring School (all Calcul Québec) May 26 - Data-intensive Computing (U. McGill) 7

8 User Feedback and Discussion Questions? Comments? We value your feedback. Contact us at: Guillimin Operational News for Users Status Pages (all CQ systems) Follow us on Twitter 8

9 Guillimin HPC Users Meeting June 16, 2016 Using Globus for Transferring Data Efficiently New Globus Web Portal Interface McGill University / Calcul Québec / Compute Canada Montréal, QC Canada

10 Motivation 10

11 What is Globus? Image from Globus.org 11

12 12

13 Compute Canada Globus Portal Compute Canada > National Services > Data Movement (Globus) 13

14 Account Creation and Login If you have a CCDB account, select Compute Canada. If not, or if you want a standalone account, select Globus ID. 14

15 Compute Canada Authentication 15

16 Globus ID Account Creation 16

17 Invitation to Link CC and GlobusID Accounts If Globus account exists: 1. Connect with Compute Canada 2. Click Link to an existing account 3. Authenticate on GlobusID.org 17

18 Where to Manage your Identities 18

19 File Transfer using the Web Interface 19

20 File Transfer with the Web Interface 1. For each side a. Select an Endpoint (user#machine) i. For example: computecanada#guillimin b. Authenticate with your cluster credentials 2. Select one or more items (files or folders) on one side 3. Click the activated arrow button 4. Wait for the report 20

21 Endpoint Creation - Adding New Resources Select add Globus Connect Personal Enter an endpoint name of your choice and click Generate Setup Key 21

22 Sharing GUI 22

23 23

24 Conclusion Documentation: portal/national-services/globus-portal/globus-user- documentation/ Former Workshop: ca/downloads/data_intensive/ %20-% 20McGill%20-%20Data%20Intensive%20Computing. pdf For any other question: 24

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