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Investor presentation Securing the digital transformation and helping build a safer world - one app at a time Philippe Courtot, Chairman and CEO Melissa Fisher, CFO October 30 th, 2018

Safe harbor This presentation includes forward-looking statements within the meaning of the federal securities laws. Forward-looking statements generally relate to future events or our future financial or operating performance. Forward-looking statements in this presentation include, but are not limited to, the following list: - our business and financial performance and expectations for future periods, including the rate of growth of our business and market share gains; - our ability to sell additional solutions to our customer base and the strength of demand for those solutions; - our plans regarding the development of our technology and its expected timing; - our expectations regarding the capabilities of our platform and solutions; - the anticipated needs of our customers; - our strategy, the scalability of our strategy, our ability to execute our strategy and our expectations regarding our market position; - the expansion of our platform and our delivery of new solutions; - the expansion of our partnerships and the related benefits of those partnerships; and - our ability to effectively manage our costs Our expectations and beliefs regarding these matters may not materialize, and actual results in future periods are subject to risks and uncertainties that could cause actual results to differ materially from those projected. These risks include those set forth in our filings with the Securities and Exchange Commission, including our latest Form 10-Q and 10-K. The forward-looking statements in this presentation are based on information available to us as of today, and we disclaim any obligation to update any forward-looking statements, except as required by law. We also remind you that this presentation will include a discussion of GAAP and non-gaap financial measures. The non-gaap financial measures are not intended to be considered in isolation or as a substitute for results prepared in accordance with GAAP. The GAAP financial measures, and a reconciliation of the non-gaap financial measures discussed in this presentation to the most directly comparable GAAP financial measures are included in the appendix of this presentation. 1

Market and Investment Opportunity The Power of the Qualys Cloud Platform One stack to consolidate traditional enterprise security/compliance solutions and secure the digital transformation 2

Investment highlights Uniquely positioned to capitalize on stack consolidation and move to the cloud Scalable business model and industry-leading profitability Multiple levers of recurring revenue growth Industry-leading Cloud Security and Compliance Platform 3

Large expanding market opportunity Qualys Cloud Platform the vehicle for TAM expansion 12% CAGR $20.7B 21% Qualys growth (1) $11.6B $10.0B CAGR 14% 8% Cloud Security IT Asset Management $5.3B $1.9B $0.5B $0.6B $1.6B $0.8B $0.9B CY2016 $2.8B $0.7B $1.3B $2.5B $1.6B $1.8B CY2021E 8% 16% 10% 13% 15% Web Security: SaaS (2) Network and Edge Security Policy and Compliance Vulnerability Assessment: App Vulnerability Assessment: Device Qualys current Total Addressable Market (1) Midpoint of 2018 Revenue Guidance (2) 2015 to 2020E period Source: IDC 4

Blue chip global customer base 74% of the Forbes Global 50, 46% of Global 500, and 25% of Global 2000 standardized on Qualys 9 of the top 10 in Software 10,300+ Customers 8 of the top 10 in Consumer Discretionary 8 of the top 10 in Consumer Staples 8 of the top 10 in Major Banks DAIMLER 8 of the top 10 in Technology 8 of the top 10 in Telecommunications 7 of the top 10 in Healthcare 6 of the top 10 in Industrial & Materials 5 of the top 10 in Insurance Note: Based on Forbes Global 2000 Classification 5

Scalable go-to-market model Market segmentation & key strategic partners ENTERPRISE Large enterprise (Over 5,000 employees) SME & SMB Small / medium business (Up to 5,000 employees) 2017 REVENUES New customers Existing customers New customers Existing customers Direct 60% Channel 40% 6

Attractive value proposition for partners High-margin recurring revenue with no capex MSSPs telcos Outsourcing providers VAS resellers Consultants 7

Strong global presence 10,300+ Customers 130+ Countries 7 Shared Platforms 72 Private Clouds 47 Locations Qualys locations 8

Qualys Cloud Platform and Roadmap 9

Qualys Cloud Platform Unified approach to detection, prevention & response Integrated Suite of Applications Analytics and Reporting Engines Distributed Sensors Hardware Virtual Cloud Agent Passive API Environments On- Premises Endpoints Cloud 10

Global visibility across environments enables superior security Scalable, self-updating & centrally managed Physical Virtual Cloud/Container Cloud Agents Passive API Legacy data centers Private cloud infrastructure Commercial IaaS & PaaS clouds Light weight, multi-platform Passively sniff on network Integration with Threat Intel feeds Corporate infrastructure Continuous security and compliance scanning Virtualized infrastructure Continuous security and compliance scanning Pre-certified in market place Fully automated with API orchestration On-premise, elastic cloud & endpoints Real-time data collection Real-time device discovery & identification Identification of APT network traffic CMDB Integration Log connectors Continuous security and compliance scanning Continuous evaluation on platform for security and compliance Extract malware files from network for analysis Agentless + Agent Based + Passive 11

Qualys Cloud Platform produces results in one place anytime, anywhere Via dynamic and customizable dashboards and centrally managed, self-updating, integrated Cloud Apps in a single-pane-of-glass UIs (AssetView, CloudView, CertView ) 1+ trillion Security Events 250+ billion Data Points Indexed on Elasticsearch Clusters 3+ billion IP Scans/Audits a Year 99.99966% Six Sigma Scanning Accuracy 12

Robust pure cloud platform serves as a scalable distribution channel Scalable, Micro-services, DevOps Scanner Service VM PC WAS WAF FIM Qualys Streaming Data Backbone Cloud Agent Service Reporting Analytics IOC Indexing Service Asset Tagging Service 13

Qualys Cloud Platform enables vendor and stack consolidation IT Security Compliance Monitoring Web Application Security New Services 14

Increasing number of Apps delivered through the Qualys Cloud Platform ASSET MANAGEMENT Asset Inventory Maintain full, instant visibility of all your global IT assets IT SECURITY CMDB Sync Synchronize asset information from Qualys into ServiceNow CMDB Cloud Inventory Inventory of all your cloud assets across AWS, Azure, GCP and others Certificate Inventory Inventory of TLS/SSL digital certificates on a global scale Vulnerability Management Threat Protection Continuous Monitoring Continuously detect and protect against attacks, anytime, anywhere Pinpoint your most critical threats and prioritize patching Alerts you in real time about network irregularities Indication of Compromise Continuously monitor endpoints to detect suspicious activity COMPLIANCE MONITORING Policy Compliance Assess security configurations of IT systems throughout your network Security Configuration Assessment Automate configuration assessment of global IT assets WEB APPLICATION SECURITY Web Application Scanning Secure web applications with end-to-end protection Container Security Discover, track, and continuously protect containers PCI Compliance Automate, simplify and attain PCI compliance quickly Cloud Security Assessment Get full visibility and control across all public cloud instances Web Application Firewall Block attacks and virtually patch web application vulnerabilities 15 Certificate Assessment Assess all your digital certificates for TLS/SSL vulnerabilities File Integrity Monitoring Log and track file changes across global IT systems Security Assessment Questionnaire Minimize the risk of doing business with vendors and other third parties

Additional apps to come Q4 2018 H1 2019 Patch Management Cross platform unified patch management to respond quickly to critical vulnerabilities Passive Network Discovery Discover and classify all live devices in your network in real-time Global IT Asset Inventory Discover all IT assets within hybrid environments Secure Access Control Respond to threats automatically by controlling access to critical resources Certificate Management Automated renewing and management of digital certificates Cloud Security Management Remediation and management of cloud vulnerabilities Secure Enterprise Mobility Continuous visibility, security and compliance of enterprise mobile devices Run-Time Container Security Runtime defense and automated policy enforcement to protect against breaches and anomalies Note: Target Beta dates 16

Scalable Business Model 17

Strong and consistent organic revenue growth Outperforming market and gaining share ($ in millions) 20% CAGR $198 $231 22% $205 $164 $168 Revenues $134 2014 2015 2016 2017 Q3 2017 YTD Q3 2018 YTD 18

Adoption of new solutions (APPS) fuels growth and profitability Quarterly revenues vs. customers $ millions $100 20+ APPS 10 APPS Q2 17 VM, PC, PCI, WAS, WAF, CM, CA, AV, SAQ, TP Initial solution Expansion Additional solutions Future products $50 $0 2 APPS Q1 08 VM, PCI 4 APPS Q2 13 VM, PC, PCI, WAS 2008 2010 2013 2015 2017 Quarterly revenues Customers 19

Increasing Cloud Agent Adoption (Units in millions) Number of Cloud Agents Sold 6.0 7.3 8.1 13.9 LTM Q4 2017 LTM Q1 2018 LTM Q2 2018 LTM Q3 2018 20

Platform adoption accelerating % of Enterprise customers with 2+ solutions % of Enterprise customers with 3+ solutions % of Enterprise customers with 4+ solutions 69% 39% 20% 57% 59% 64% 69% 19% 23% 30% 39% 2% 6% 14% 20% Q3 FY15 Q3 FY16 Q3 FY17 Q3 FY18 Q3 FY15 Q3 FY16 Q3 FY17 Q3 FY18 Q3 FY15 Q3 FY16 Q3 FY17 Q3 FY18 21

Multiplier effect Enterprise customers with 4+ solutions spend over 5x that of 1-solution customers ($ in thousands) Avg. LTM revenues per customer $300 $200 $100 $105 $136 $48 $258 $268 $206 $192 $209 $158 $52 $49 $52 5+x of 1-solution average $0 LTM Q3 FY15 LTM Q3 FY16 LTM Q3 FY17 LTM Q3 FY18 Enterprise customers with 1 solution Enterprise customers with 3+ solutions Enterprise customers with 4+ solutions 22

Our largest customers spend an average of LTM $1M+ with Qualys ($ in millions) $80 67 $75 60 Cumulative revenues $60 $40 $20 26 $23 34 $32 47 $48 40 20 Customers $0 LTM Q3 2015 LTM Q3 2016 LTM Q3 2017 LTM Q3 2018 0 Note: Customer count is defined as customers with greater than $500K in annual revenue 23

Platform enables scalable operational model Revenue per S&M headcount % of Customer Support, Operations, and R&D headcount in India $0.9M $1.0M $1.1M $1.2M 46% 58% 28% 36% 2014 2015 2016 2017 High sales leverage 2014 2015 2016 2017 Leveraging low cost geos 24

2018 Revenue and Non-GAAP EPS Growth Quarterly Revenues Annual Revenues Quarterly Non-GAAP EPS Annual Non-GAAP EPS $71.7M $74.1M $230.8M $278.8M $0.49 $1.63 $1.09 $0.40 Actual Q3 FY18 Guidance Midpoint Q4 FY18 Actual FY17 Guidance Midpoint FY18 Actual Q3 FY18 Guidance Midpoint Q4 FY18 Actual FY17 Guidance Midpoint FY18 25

$140 $120 $100 $80 $60 $40 $20 $0 45% 40% 35% 30% 25% 20% 15% 10% 5% 0% Increasing adjusted EBITDA & operating cash flow ($ in millions) 47% 49% 48% 24% $32 34% 34% 37% 36% $85 $57 $68 $61 $140 41% $120 $83 $100 $80 $60 $40 14000% 12000% 10000% 8000% 6000% 4000% 31% $41 40% 34% $66 $68 $108 $82 $99 50% 40% 30% 20% 10% 0% $20 2000% -10% 2014 2015 2016 2017 Q3 2017 YTD Adjusted EBITDA Q3 2018 YTD Adjusted EBITDA margin (%) $0 0% 2014 2015 2016 2017 Q3 2017 YTD Operating cash flow Q3 2018 YTD Operating cash flow margin (%) -20% 26

Industry-leading margins QLYS 39% Q2 CY2018 EBITDA margin vs. select Security and SaaS peers Security SaaS Peer average: 11% Source: JPMorgan 27

Industry-leading Performance QLYS 62% Q2 CY2018 Rule of 40 vs. select Security and SaaS peers Security SaaS Rule of 40 (40%) Source: JPMorgan 28

Unique advantages of the Qualys Cloud Platform No hardware to buy or manage Lower operating costs Easy to deploy and maintain Unprecedented scaling Nothing to install or manage, and all services are accessible in the cloud via web interface. Qualys operates and maintains everything. With everything in the cloud, there are no capital expenditures, no extra human resources needed, and no infrastructure or software to buy and maintain. Easily perform assessments on geographically distributed and segmented networks at the perimeter, behind the firewall, on dynamic cloud environments and endpoints. Qualys Cloud Platform is a scalable, end-to-end solution for all aspects of IT security. Once deployed, seamlessly add new coverage, users and services as you need them. Always Up-to-date Qualys has the largest knowledge base of vulnerability signatures in the industry and performs over 3 billion IP scans per year. All security updates are made in real time. Data stored securely Vulnerability data is securely stored and processed in an n-tiered architecture of load-balanced servers. Our encrypted databases are physically and logically secure. Available as a Public or on-premises Private Cloud Full server rack Virtual rack Standalone appliance FedRAMP authorized For governments, enterprises, and MSSPs For governments, enterprises, and MSSPs For small businesses 29

Appendix 30

Reconciliation of Adjusted EBITDA ($ in millions) 2014 2015 2016 2017 Q3 2017 YTD Q3 2018 YTD Net income $30.2 $15.9 $19.2 $40.4 $37.6 $42.9 Depreciation and amortization of property and equipment 11.5 14.0 16.6 19.8 14.7 18.9 Amortization of intangible assets 0.4 0.4 0.4 0.8 0.4 2.4 Interest expense 0.0 0.0 0.0 0.0 0.0 0.1 Provision for (benefit from) income taxes (21.6) 8.7 11.2 (1.1) (8.6) (2.3) Stock-based compensation 10.5 17.5 20.1 27.0 18.5 22.7 Other (income) expense, net 0.6 0.3 (0.3) (2.1) (1.5) (3.4) Acquisition-related expense --- --- --- 0.1 --- 1.9 One-time tax related expense --- --- 0.7 --- --- --- Adjusted EBITDA $31.7 $56.7 $68.0 $84.9 $61.1 $83.2 31

Reconciliation of Non-GAAP Net Income ($ in millions, except per diluted share metric) 2017 Q3 2018 GAAP Net income $40.4 $23.5 Stock-based compensation 27.0 6.8 Intangible asset amortization (1) 0.5 0.8 Acquisition-related expense (2) 0.1 0.0 Tax adjustment (24.5) (10.4) Non-GAAP Net income $43.5 $20.7 Non-GAAP Net income per diluted share $1.09 $0.49 (1) Includes amortization of intangible assets from acquisitions of Nevis Networks, NetWatcher and 1Mobility. (2) Relates to compensation expense from the acquisition of NetWatcher. 32