Subject Repositories for Research Data
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1 Subject Repositories for Research Data The Dryad Approach
2 OVERVIEW Introduction to Dryad Dryad Sustainability Dryad Innovations
3 OBJECTIVE To make data archiving and reuse standard within scientific communication
4 MEANS Researcher Benefits Responsible data reuse Low burden for data archiving at manuscript submission Empower societies & publishers in shared governance
5 +20 INTEGRATED PARTNER JOURNALS The American Naturalist BMJ Open Biological Journal of the Linnean Society Ecological Monographs Evolutionary Applications Evolution Heredity Journal of Evolutionary Biology Journal of Fish and Wildlife Management Journal of Heredity Journal of Paleontology Molecular Ecology and M.E. Resources Paleobiology PLoS Biology Systematic Biology ZooKeys & 7 other Pensoft journals
6 CONTENT GROWTH
7 USAGE GROWTH 1366 views 2536 downloads
8 ARTICLE AND DATA SUBMISSION INTEGRATION Why? Permanent links to both data and article Fast data deposition Specific journal requirements Time of data submission Prior to manuscript review OR Upon acceptance Embargo Data released upon publication OR 1 year, no questions asked embargo
9 BUSINESS MODEL Who picks up the bill?
10 DRYAD S SUSTAINABILITY MODEL Deposit fees Time of Deposit = Time when costs are incurred Revenue can scale with costs Costs are distributed fairly and widely Membership fees Cover annual Membership meetings Additional revenue Grants supplement operational budget for R&D activities
11 TECHNICAL INNOVATION Dryad Metadata Application Profile Data ONE API Identifier Services Item Level Versioning Vocabularies (HIVE) dryad.googlecode.com wiki.datadryad.org
12 DRYAD APPLICATION PROFILE Publication Data Package Data File Data File Data File Metadata Descriptions: Publication article associated with content in Dryad Data Package group of data files associated with a given publication Data File Deposited Data Resource. (One or more bitstreams)
13 DRYAD APPLICATION PROFILE: PUBLICATION <DryadPublication> <dcterms:type>publication</dcterms:type> <status>deposited</status> <bibo:status>published</bibo:status> <dcterms:creator>elias, Marianne</dcterms:creator> <dcterms:creator>joron, Mathieu</dcterms:creator> <dcterms:issued> </dcterms:issued> <dcterms:title> Out of the Andes: patterns of diversification in clearwing butterflies </dcterms:title> <bibo:journal>molecular Ecology</bibo:Journal> <bibo:volume /> <dcterms:identifier /> <bibo:doi>doi: /j x x</bibo:doi> <dcterms:isreferencedby>doi: /dryad.1705</dcterms:isreferencedby> </DryadPublication>
14 DRYAD APPLICATION PROFILE: DATA PACKAGE <DryadDataPackage> <dcterms:type>package</dcterms:type> <status>deposited</status> <dcterms:creator>elias, Marianne</dcterms:creator> <dcterms:creator>joron, Mathieu</dcterms:creator>... <dcterms:datesubmitted> t15:15:25z</dcterms:datesubmitted> <dcterms:available> t15:15:25z</dcterms:available> <dcterms:title> Data from: Out of the Andes: patterns of diversification in clearwing butterflies</dcterms:title> <dcterms:identifier>doi: /dryad.1705</dcterms:identifier> <dcterms:subject>insects</dcterms:subject>... <dwc:scientificname>ithomia</dwc:scientificname> <dwc:scientificname>napeogenes</dwc:scientificname> <dcterms:spatial>south and Central America</dcterms:spatial> <dcterms:temporal>middle Miocene</dcterms:temporal> <dcterms:references>doi: /j x x</dcterms:references> <dcterms:haspart>doi: /dryad.1705/1</dcterms:haspart>... </DryadDataPackage>
15 DRYAD APPLICATION PROFILE: DATA FILE <DryadDataFile> <dcterms:type>file</dcterms:type> <status>deposited</status> <dcterms:creator>elias, Marianne</dcterms:creator> <dcterms:title>napeogenesef1a.nex</dcterms:title> <dcterms:identifier>doi: /dryad.1705/2/dap</dcterms:identifier> <dcterms:rights></dcterms:rights> <dcterms:description> Elongation Factor 1 alpha sequences for specimens of Napeogenes representing all know species and various subspecies. </dcterms:description> <dcterms:subject>comparative Biology</dcterms:subject> <dwc:scientificname>napeogenes</dwc:scientificname> <dcterms:spatial>south and Central America</dcterms:spatial> <dcterms:temporal>middle Miocene</dcterms:temporal> <dcterms:datesubmitted> t15:15:17z</dcterms:datesubmitted> <dcterms:available> t15:15:17z</dcterms:available> <dcterms:provenance> Made available in DSpace on T15:15:17Z (GMT). No. of bitstreams: 1 NapeogenesEF1a.nex: bytes, checksum: 854bf1ff9838dd6332ccbfa (MD5) </dcterms:provenance> <dcterms:ispartof>...</dcterms:ispartof> </DryadDataFile>
16 IDENTIFIER SERVICES Local: Handle: DOI: URN: PURL: ARK: /10255/36263 /hdl:10255/36263 /doi: /dryad.bb7m4 /urn:lsid:ubio.org:host:36263 /purl:purl.org/... /ark:12345/...
17 IDENTIFIER SERVICES MULTIPLE PROVIDERS MINTING (OR RESERVATION) REGISTRATION CITATION METADATA PUBLICATION
18 UC3EZID : N2T RESOLVER How the N2T resolver works with ARKs, Handles, DOIs, URNs, PURLs, etc. (NAA = N2T NAA Number, eg, 12345) (NAA = ARK NAA Number, eg, 12345) (NAA = URN NA, eg, nbn) (NAA = Handle NA, eg, 12345) (NAA = DOI NA, eg, ) (NAA = PURL Resolver, eg, purl.org)
19 DATACITE
20 IDENTIFIER STACK Handle DOI Crossref DOI Datacite DOI EZID
21 DATA ONE API Programmatic access to data files using the DataONE API ListObjects: Retrieve the file: dryad.1850/1/nex Retrieve Metadata Objects (/dap): dryad.1850/1/dap.
22 ITEM VERSIONING
23 ITEM VERSIONING User Mediated By Admins, Managers or Original Submitter. Versions may still be edited. Canonical = Recent Version of Item Past Versions are Complete Items Delete, Withdraw, Update Utilizes Existing Workflow Processes Submission Workflow for editing Reviewer Workflow for Review
24 ITEM VERSIONING doi: /dryad.bb7m4
25 CONSERVATION OF BITSTREAMS
26 VOCABULARIES (HIVE)
27 SUBMISSION ASSISTANCE: AUTOMATIC METADATA EXTRACTION
28 VOCABULARIES (HIVE) <rdf:rdf> <rdf:description rdf:about=" <rdf:type rdf:resource=" <skos:preflabel>wood pulp</skos:preflabel> <skos:altlabel>pulp (wood)</skos:altlabel> <skos:broader rdf:resource=" /> <skos:related rdf:resource=" /> <skos:related rdf:resource=" /> <skos:related rdf:resource=" /> <skos:related rdf:resource=" /> <skos:inscheme rdf:resource=" <skos:scopenote>lsc Life Sciences</skos:scopeNote> </rdf:rdf>
29 COMPONENTS + BM25F for semantic search
30 SUPPORTING ORGANIZATIONS
31 TECHNICAL ACKNOWLEDGEMENTS Ryan Scherle Dryad Mark
32 Questions?
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