VNMRJ 2.1B Quick overview and BioPack features
|
|
- Estella Heather Wilcox
- 6 years ago
- Views:
Transcription
1 VNMRJ 2.1B Quick overview and BioPack features VNMRJ 2.1B interface is a much more intuitive user interface than the VNMR6.1C. The Java interface is a layer on top of the conventional VNMR so all commands and macros from the old interface are still valid in VNMRJ 2.1B. As a matter of fact VNMRJ 2.1B as shown in Fig. 1 is essentially allows one to use it much like 6.1C or earlier version (but for the absence of menus). Command Line Text out (dg) Figure 1 It is, however, useful to familiarize with VNMRJ 2.1B features and use them to both ease and speed up the operation of the spectrometer. The focus from here on is based on BioPack/VNMRJ interface. Figures 2, 3, and 4 show the initial sample setup panels in VNMRJ. After proper sample positioning in the magnet (see Sample Positioning document) the sample temperature, locking, and shimming are implemented from the panels in the Setup folder.
2 Click on the Setup folder Select Spin&Temp Set the temperature here Figure 2 After selecting the temperature by entering the number or using the slider hit the Regulate temperature button. Selecting the check box control temperature from this panel only avoids accidental temperature changes with go in different experiments. Locking is the next step and there is no separate acqi window for this function. The graphics area displays the lock signal. The lock tools are selected from the Lock panel (Figure 3). The sliders can be used to change values or clicking the left/right buttons on the mouse will also do the same.
3 Click on the Setup folder Lock panel Clicking here enables lock/unlock Figure 3 One could do gradient shimming from the lock panel by clicking the Gradient Autoshim on Z button. It would use the last used gradient map. A new map can be made with the Setup Gradient Shimming button. This loads gmapsys experiment and associated panels for making a new map. The manual shimming tools are also available in Shimming Panel (see Figure 4). Both axial and non-spin shim buttons are available. With every sample, particularly in Shigemi tubes, it is better to touch X, Y, XZ, YZ, and then Z1 and Z2 before making a new map.
4 Click on the Setup folder Select Shim Panel Figure 4 Experiment selection: The pull-down menus on the top Menu Bar allow one to navigate through the various functions that one would want to select. An experiment is selected from the experiment menu. In Figure 5, the way an experiment is selected in VNMRJ is illustrated.
5 Menu Bar Figure5 The walk-through menu system gives flexibility to group NMR experiments based on a common type, such as water suppression experiments 1D, 2D, etc, Protein triple resonance experiments, Protein HSQC experiments and so on. Selecting Presat from this menu will setup Presat experiment (Figure 6). This is the experiment one would first start after proper sample placement in the magnet (see Sample Positioning document), tuning and shimming. Once the experiment is selected the following steps are carried out. (See Fig.6 for the following points) (1) Select the Find Best Saturation Frequency button. This would array tof and satfreq (diagonal array) and find the best saturation frequency for the solvent at the selected temperature. (2) Calibrate pw360 on proton by clicking on the the pw360 button. The experiment will start with pw array and enter the number of the array when the signal goes to zero. (3) Then update the probe file value for proton by clicking the Update probe file with this pw90 button.
6 (1) (2) (3) Figure 6 BioPack Calibrations: Now the system is ready to do a full BioPaack calibration. Assuming that the probe file (usually named HCN) has a close enough starting values for carbon and nitrogen pulse widths, one proceeds to the Globals & Probe file panel in Setup folder (Figure 7). If not, it is advised that the probe file be first updated with a known set of values and do the calibrations. (See Fig. 7 for the following points) (1) If the probe in use is a cold probe then first set dsp= I from the command line and click the ActivateQcomp option button. Otherwise this step is not needed and just set dsp= r. (2) If the probe is a cold probe then click the Automatic Gradient (WURST) Shaping radio button. Although, gradient shaping is useful in RT probes to it is not necessary as the gradient recovery is very fast in these probes. But one should be warned that if the probe is calibrated with gradient shaping then in all experiments it should be used (gradienshaping= y ) otherwise the gradient calibrations will be wrong in that experiment.
7 (3) If BioPack Power Limits is checked and values are entered then during calibration BioPack will use these settings to create decoupling patterns. (4) The default Carbon spin lock value is generally correct for the given spectrometer frequency. But it is useful to check it. (1) (3) (2) (4) Figure 7 The next step is to initiate calibrations from the Calibrations panel. Figure 8 illustrates the various options in this panel. (See Fig. 8 for the following points) (1) Here there are 5 options. The very first time it is suggested that the first option (Full Using Probefile Values) is initiated. A detailed description of all the options can be easily viewed in the text page by clicking the Describe Options on this Page button. (2) For just a N15 labeled protein there is a separate option for that This option does a sub set of the full calibration omitting carbon experiments. A similar button for C13 only labeled protein is also available (it is buried behind the pulled down menu in this figure).
8 (3) There are buttons for H2- calibration depending on the channel used for decoupling. For new samples the flipback pulses can also be calibrated separately. (4) After calibration a set of 1D or 2D experiments (NH and CH planes) can be acquired automatically to see the general feasibility of experiments with a given sample. (4) (1) (2) (3) Figure 8 It is now straightforward to select any BioPack experiment from the Experiment menu from the Menu Bar (Fig. 5) and select the number of transients and increments in the indirect dimensions (Fig. 9) and start the experiment. All the other parameters like pulse widths, powers, delays, and decoupling conditions are automatically retrieved from the calibrated probe file. Pulses sequence specific parameters and flags are in the Pulsesequence panel (see Fig. 9).
9 Start here for setting parameters Figure 9 Calibrated Parameters come from probe file Set ni, phase Set ni2, phase2 BioPack installation procedure is described in a separate document BioPack_Install.
BioPack. User Guide. Agilent Technologies
BioPack User Guide Agilent Technologies Notices Agilent Technologies, Inc. 2010 No part of this manual may be reproduced in any form or by any means (including electronic storage and retrieval or translation
More informationNMR Training VNMRJ 4.2A/VNMRS 400
NMR Training VNMRJ 4.2A/VNMRS 400 The VNMRS/new 400 MHz NMR uses VNMRJ 4.2A. Although VNMRJ is different than VNMRalmost ALL typed commands that you know from VNMR should work. LOGIN: Your username is
More informationVnmrJ Walkup. Varian NMR Spectrometer Systems With VnmrJ 1.1D Pub. No , Rev. 0604
VnmrJ Walkup Varian NMR Spectrometer Systems With VnmrJ 1.1D Pub. No. 01-999266-00, Rev. 0604 VnmrJ Walkup Varian NMR Spectrometer Systems With VnmrJ 1.1D Pub. No. 01-999266-00, Rev. 0604 VnmrJ Walkup
More informationVnmrJ Walkup. Varian, Inc. Inova and MercuryPlus NMR Systems With VnmrJ 2.2D Software Pub. No , Rev. A 0808
VnmrJ Walkup Varian, Inc. Inova and MercuryPlus NMR Systems With VnmrJ 2.2D Software Pub. No. 01-999377-00, Rev. A 0808 VnmrJ Walkup Varian, Inc. Inova and MercuryPlus NMR Systems With VnmrJ 2.2D Software
More informationVNMRJ 4.2 INSTRUCTIONS: QANUC 500 FOR CHEMISTS
VNMRJ 4.2 INSTRUCTIONS: QANUC 500 FOR CHEMISTS April 16, 2018 1. Sample preparation a. Tubes of any length can be used b. Make your samples 4 cm deep. They will not shim as well if they are shorter; you
More informationVanderbilt Small Molecule NMR Center
Vanderbilt Small Molecule NMR Center Instructions for Using TOPSPIN version 2.0 DRX 400: Setting up 1H, 13C (1H decoupled), and 31P NMR Experiments Getting started: Sample Preparation: Make sure your sample
More informationVNMRJ 4.2 INSTRUCTIONS: VARIAN MERCURY 400
VNMRJ 4.2 INSTRUCTIONS: VARIAN MERCURY 400 January 10, 2019 1. Sample preparation a. Tubes of any length can be used b. Make your samples 4 cm deep. They will not shim as well if they are shorter; you
More informationNMR Spectroscopy with VnmrJ. University of Toronto, Department of Chemistry
NMR Spectroscopy with VnmrJ University of Toronto, Department of Chemistry Walk-up interface 1 Logging in 1 Starting VnmrJ 1 Inserting sample into the magnet or sample changer 1 Enter sample information
More informationUC DAVIS NMR FACILITY VNMRJ SHORT MANUAL FOR VARIAN/AGILENT NMR SPECTROMETERS
UC DAVIS NMR FACILITY VNMRJ SHORT MANUAL FOR VARIAN/AGILENT NMR SPECTROMETERS TABLE OF CONTENTS Disclaimer... 2 Conventions... 2 Routine 1D NMR Experiments Procedure for acquiring 1D Proton spectrum...
More informationQuick Guide to Topspin
Quick Guide to Topspin 1. Log into the workstation. Right mouse click on the desktop anywhere and select new terminal. Type topspin [enter] (if this fails, create the launcher as described next). Alternatively,
More informationWalkup NMR. Varian NMR Spectrometer Systems With VNMR 6.1C Software. Pub. No , Rev. A0800
Walkup NMR Varian NMR Spectrometer Systems With VNMR 6.1C Software Pub. No. 01-999159-00, Rev. A0800 Walkup NMR Varian NMR Spectrometer Systems With VNMR 6.1C Software Pub. No. 01-999159-00, Rev. A0800
More informationAcquiring Data in VnmrJ 4.2A
Acquiring Data in VnmrJ 4.2A Linux Primer Initial Steps Changing Password Disabling Screen Lock Reservations Reservation Terminals Rules and Proper Etiquette System Identification Working with VnmrJ 4.2A
More informationVNMRJ 4.2 INSTRUCTIONS: VARIAN MERCURY 400 AND VARIAN VNMRS 500
VNMRJ 4.2 INSTRUCTIONS: VARIAN MERCURY 400 AND VARIAN VNMRS 500 August 9, 2016 1. Sample preparation a. Tubes of any length can be used b. Make your samples 4 cm deep. They will not shim as well if they
More informationTroubleshooting Acquisition Related Problems
Troubleshooting Acquisition Related Problems This handout contains pertinent information to help you when a problem arises. Please look through the topics below to identify and find resolutions to the
More informationNMR Experiment Procedure
NMR Course 2009 February 19, 2009 2009 NMR Research Center NMR Experiment Procedure NMR Research Center 2/25/2009 61 Experimental Guide for Varian MR Spectrometers February, 2009 Introduction: NMR Experiment
More informationVnmrj 3.1 New and improved features
Vnmrj 3.1 New and improved features Automation& Hardware Printing USB printers are supported. Using CUPS, a generic print dialog and JPG, PDF, & other formats have replaced the previous method of sending
More informationVarian Solution NMR Automation Procedure
Menu System System Tool Bar Command Line Graphics Tool Bar Vertical Panels Protocols NMR Data Display NMR Graphics Area Study Queue Horizontal Panels Activity Monitoring Varian Solution NMR Automation
More informationQuick Start Guide to nmrpipe Processing of 15 N-HSQC data
Quick Start Guide to nmrpipe Processing of 15 N-HSQC data Data conversion: We make the basic assumption here that the data set was recorded on an INOVA-class or later model of NMR instrument running VNMRJ.
More informationVnmrJ 2.2B Installation and Administration. Varian NMR Systems With VnmrJ 2.2B Software Pub. No , Rev. B 0107
VnmrJ 2.2B Installation and Administration Varian NMR Systems With VnmrJ 2.2B Software Pub. No. 01-999341-00, Rev. B 0107 VnmrJ 2.2B Installation and Administration Varian NMR Systems With VnmrJ 2.2B Software
More informationNMR Data Acquisition and Processing Procedure
NMR Data Acquisition and Processing Procedure Dr. Jianfeng Zhu (Research Officer) Please DO NOT remove from NMR lab! Things to Avoid when Using NMR Lab Here's a list of stuff that I have seen that you
More informationOn Artemis and Cronus, make sure you are adjusting the db scale and not the watts
Solvent Suppression - Presaturation (NOTE: There are many types of solvent suppression this is presaturation and all exchangeable protons will be attenuated-instructions for other types follow) 1. Turn
More informationNMR Experiment Procedure
2013 NMR Experiment Procedure NMR Center Emory University 6/22/2013 Experiment Guide for Varian NMR Spectrometers June, 2013 Introduction: NMR Experiment Procedures...1 Exp. 1: 1D proton and Basic Operations...2
More informationTopSpin QuickStart. Default State TopSpin should be running at all times. If this is not the case, you may need to Log In and Start TopSpin.
TopSpin QuickStart Preliminaries Sign Up Sign up for instrument time at calendar.yahoo.com/hmcnmr The password is nmr. During the summer, 1100-1200 and 1600-1700 are reserved for walk-on use (15 min maximum
More informationNMR Course /13/ :31:47 PM Emory University
1 Introduction: NMR Experiment Procedures Step 1. Login Varian UNITY INOVA NMR spectrometer is controlled by a host Sun computer. For security and administration reasons, all research groups at Emory University
More informationSee XwinNMR Acquisition Manual, Sections 1.4, 1.5 (see list of acquistion parameter descriptions starting , pg. A-39), 1.6
Bruker Avance360 X-Nucleus Experiments Page 13 III. X-Nucleus Acquisitions Example Session See XwinNMR Acquisition Manual, Sections 1.4, 1.5 (see list of acquistion parameter descriptions starting 1.5.2.4,
More information1D NMR Training Manual for Operating the Bruker 700 MHz Avance III HD NMR. Spectrometer without the Sample Changer and IconNMR
1D NMR Training Manual for Operating the Bruker 700 MHz Avance III HD NMR Spectrometer without the Sample Changer and IconNMR Scheduling NMR Time: Any use of the 700 MHz NMR spectrometer requires prior
More informationNMR Spectrometer Crib-Sheet
NMR Spectrometer Crib-Sheet Sample Preparation: 1. Dissolve your sample in a deuterated solvent. For 1 H NMR use ~ 1 mm concentrations. For 13 C NMR, use ~ 10 mm. 2. Use clean dry tubes to avoid contaminating
More informationc. Saturday and Sunday: 10 minute time blocks and unlimited time.
Scheduling 400 MHz A with 100 slot sample changer: a. Monday to Friday from 8 am to 8 pm: 10 minute blocks, 30min max. b. Monday to Friday from 8 pm to 8 am: 10 minute blocks, unlimited time. c. Saturday
More informationShort instructions for the basic operation of the AVANCE II 400 MHz Bruker NMR Using ICON-NMR (PS751)
Dissimilar This manual is intended to be only a very brief introduction for using the Bruker 400 MHz NMR spectrometer (PS751) at the California State University LA NMR Facility. For complete information
More informationVarian Solution NMR Procedure
System Tool Bar Command Line Vertical Panels Protocols Menu System User Tool Bar NMR Data Display Graphics Tool Bar NMR Graphics Area Study Queue Horizontal Panels Hardware Bar Varian Solution NMR Procedure
More information3-D Gradient Shimming
3-D Gradient Shimming 3-D Gradient Shimming on imaging and micro-imaging systems Technical Overview Introduction Advantage statement The GE3DSHIM method is a 3-D gradient shimming procedure developed for
More informationPROCESSING 2D SPECTRA USING VNMRJ JB Stothers NMR Facility Materials Science Addition 0216 Department of Chemistry Western University
PROCESSING 2D SPECTRA USING VNMRJ JB Stothers NMR Facility Materials Science Addition 0216 Department of Chemistry Western University 1. INTRODUCTION...1 1.1. About this Worksheet... 1 1.2. A Very Brief
More informationVnmrJ 3.2: Industry-Leading Software for NMR Spectrometers
VnmrJ 3.2: Industry-Leading Software for NMR Spectrometers Key Benefits: Full integration of ChemPack Integration of NMR Pipe Availability of DataStation version A new, simplified sample-centric workflow
More informationPINMRF. Bruker AV-III / Avance DRX NMR Spectrometers running TopSpin Training Supplement for Advanced 1D NMR Spectroscopy
PINMRF Bruker AV-III / Avance DRX NMR Spectrometers running TopSpin Training Supplement for Advanced 1D NMR Spectroscopy INCLUDING: AV-III-400-HD w/ 5mm BBFO SmartProbe 369 WTHR AV-III-500-HD w/ 5mm BBFO
More informationHIFI NMR : part1 automated backbone assignments using 3D->2D
HIFI NMR : part automated backbone assignments using 3D->2D Marco Tonelli National Magnetic Resonance Facility At Madison NMRFAM Recording multidimensional experiments is time costly In conventional multidimensional
More informationDCIF NMR Training Guide 400 MHz Bruker DRX B401 Bruker DPX B400
1 DCIF NMR Training Guide 400 MHz Bruker DRX B401 Bruker DPX B400 400: The Bruker DPX 400 has a broadband probe with 1 H Channel and X-Channel tunable from (30-300 MHz). Both Channels may be tuned researchers.
More information1. Log in at the RESLOG terminal by entering your code and select the instrument you want to use.
Skip to Main Content Home Policies Instruments Manuals Staff Useful Links Operating Instructions for Varian NMR Spectrometers Instructions for Operating Varian Mercury and Unity/Inova NMR Spectrometers
More informationVarian Solution NMR Automation Procedure (VNMRS Machines running VNMRJ 4.2 under Red Hat Enterprise 5.1)
Menu System System Tool Bar Command Line Graphics Tool Bar Vertical Panels Protocols NMR Data Display NMR Graphics Area Study Queue Horizontal Panels Activity Monitoring Varian Solution NMR Automation
More informationFOCUS. Image Based Automatic Shimming Using B 0 Gradients. Installation and Users Guide Version 0.9
FOCUS Image Based Automatic Shimming Using B 0 Gradients Installation and Users Guide Version 0.9 FOCUS - Field Optimization by Computed Update of Shims Joost A. B. Lohman, Bruker Spectrospin ltd, U.K.
More informationDCIF NMR Training Guide Varian Mercury 300 MHz Last Update
DCIF NMR Training Guide Varian Mercury 300 MHz Last Update 10-12-07 1 This document is intended as an introductory guide to the Varian VNMR NMR processing / acquisition software. It is by no means intended
More informationInstructions for 1 H-, 13 C-, 19 F-, and 31 P-Spectra on the Varian Mercury-Vx-300
1 Instructions for 1 H-, 13 C-, 19 F-, and 31 P-Spectra on the Varian Mercury-Vx-300 Please note: Under no circumstances move the magnet or the automatic sampler table. Do not attempt to use the auto sampler
More informationSupplementary Material
Supplementary Material Sugar-to-base correlation in nucleic acids with a 5D APSY-HCNCH or two 3D APSY-HCN experiments Barbara Krähenbühl Daniela Hofmann Christophe Maris Gerhard Wider Institute of Molecular
More informationProcessing data with Bruker TopSpin
Processing data with Bruker TopSpin This exercise has three parts: a 1D 1 H spectrum to baseline correct, integrate, peak-pick, and plot; a 2D spectrum to plot with a 1 H spectrum as a projection; and
More informationModern Solid State NMR. Stefan Steuernagel Bruker BioSpin GmbH, Germany BeNeLux Users Meeting, Brussels November 25, 2016
Modern Solid State NMR Stefan Steuernagel Bruker BioSpin GmbH, Germany BeNeLux Users Meeting, Brussels November 25, 2016 Modern Solid State NMR Solid state DNP NMR 111 khz MAS with 0.7mm probe TopSolids
More informationVarian NMR Instructions - 1D. Department of Chemistry NMR Facility University of Minnesota
Varian NMR Instructions - 1D Department of Chemistry NMR Facility University of Minnesota June 17, 2008 Table of Contents 1. General Information...2 2. References...2 3. Rules...3 4. Scheduling...3 5.
More informationTopSolids Where Expertise meets Convenience
TopSolids Where Expertise meets Convenience Dr. Sebastian Wegner Bruker BioSpin, France 30 ème Réunion Utilisateurs 29-30 Novembre 2016 Innovation with Integrity 12/9/2016 2 With TopSolids the delicate
More informationPINMRF. Varian 300 MHz NMR Spectrometers Training Guide for Basic 1D NMR Spectroscopy
PINMRF Varian 300 MHz NMR Spectrometers Training Guide for Basic 1D NMR Spectroscopy INCLUDING: Inova-300-1 w/ 5mm 4-nucleus probe 365 WTHR Inova-300-2 w/ 5mm 4-nucleus probe 4100 BRWN Table of Contents
More informationTraining Manual For Chemistry NMR Facility Spectrometers
Training Manual For Chemistry NMR Facility Spectrometers Indiana University NMR Facility January, 2017 Staff: Dr. Frank Gao, Director Dr. Arif Tapash Dr. Hongwei Wu Location: C237 and C234F Web Site: http://nmr.chem.indiana.edu
More informationGetting Started. Varian NMR Spectrometer Systems With VNMR 6.1B Software. nuclear magnetic resonance instruments. Pub. No , Rev.
Getting Started Varian NMR Spectrometer Systems With VNMR 6.1B Software Pub. No. 01-999083-00, Rev. A1298 nuclear magnetic resonance instruments Getting Started Varian NMR Spectrometer Systems With VNMR
More informationAgilent High-Resolution Diffusion-Ordered Spectroscopy (DOSY)
Agilent High-Resolution Diffusion-Ordered Spectroscopy (DOSY) User Guide Agilent Technologies Notices Agilent Technologies, Inc. 2011 No part of this manual may be reproduced in any form or by any means
More informationNMR INSTRUMENT INSTRUCTIONS: Safety and Sample Preparation
NMR INSTRUMENT INSTRUCTIONS: Safety and Sample Preparation The GVSU chemistry department owns 2 NMR spectrometers. A JEOL Eclipse 300 MHz and a Varian Inova 400 MHz. Due to their strong, constant magnetic
More informationBrief IconNMR and Topspin 3.5 User Guide for Bruker NMR Spectrometers Avance IIIHD 400MHz NMR with Autosampler in Chemistry room 93 DISCLAIMER
DISCLAIMER Brief IconNMR and Topspin 3.5 User Guide for Bruker NMR Spectrometers Avance IIIHD 400MHz NMR with Autosampler in Chemistry room 93 This document is intended to be a brief, bare-bones user s
More informationGeneral Information for Automated Inova 500 MHz NMR (Indy)
General Information for Automated Inova 500 MHz NMR (Indy) Primary Contacts: NMR Facility Manager: David VanderVelde, x3004, davidv@caltech.edu GLA: Pamela Tadross, x6131, 646-220-5789 (cell), 204 Church,
More informationAgilent VnmrJ 3.2 Automation
Agilent VnmrJ 3.2 Automation User Guide Agilent Technologies Notices Agilent Technologies, Inc. 2011 No part of this manual may be reproduced in any form or by any means (including electronic storage and
More informationDiffusion Ordered Spectroscopy (DOSY) Overview BRUKER last edit 5/14/12
Diffusion Ordered Spectroscopy (DOSY) Overview BRUKER last edit 5/14/12 DOSY Diffusion Ordered SpectroscopY. NMR diffusion experiments, like DOSY, are used to determine the diffusion coefficients of solute
More informationEQNMR Facility Rules of Use
New User Package for East Quad 600 NMR Date: 01/25/08 Welcome to the East Quad NMR facility. This document contains information for new users using the 600MHz NMR at our facility. In this package, you
More informationBruker OminiFlex MALDI-TOF Mass Spectrometer Operation Quick Start
Bruker OminiFlex MALDI-TOF Mass Spectrometer Operation Quick Start Sample preparation for the Bruker OminiFlex MALDI-TOF Mass Spectrometer is of crucial importance. Please take care when preparing your
More informationRoutine 1 H and 13 C NMR Data Acquisition Basic Topspin Processing Guide For PSC and NSC Bruker 400 NMR Spectrometer
Routine 1 H and 13 C NMR Data Acquisition Basic Topspin Processing Guide For PSC and NSC Bruker 400 NMR Spectrometer Dr. Zhenming Du Email: zdu@gsu.edu Phone: 3-5538 Revised 04/02/2015 LC=Left click; DC=double
More information15. HOMONUCLEAR COSY
Homonuclear COSY Page 67 15. HOMONUCLEAR COSY by cg fry: created 12/27/94 updated 11/26/00 In COrrelational SpectroscopY (COSY), a fast 2D spectrum is usually obtained first. This initial set of data takes
More informationNMR FACILITY DEPARTMENT OF CHEMISTRY University of Washington XWINNMR 3.5 TRAINING NOTES. 08/8/2005 rajan paranji
NMR FACILITY DEPARTMENT OF CHEMISTRY University of Washington XWINNMR 3.5 TRAINING NOTES 08/8/2005 rajan paranji CONTENTS Views of XWINNMR INTERFACE 4 Operating the Bruker Spectrometer FLOW CHART 5 LOGON
More informationDCIF NMR Training Guide 400 MHz Bruker AVANCE III HD b400 last edit 3/9/2015
DCIF NMR Training Guide 400 MHz Bruker AVANCE III HD b400 last edit 3/9/2015 The Bruker AVANCE III HD 400 has a broadband (BBO) probe with a 1 H Channel and X-Channel tunable from (30-300 MHz). Both channels
More informationUC DAVIS NMR FACILITY BRUKER SHORT MANUAL FOR TOPSPIN 3.X
TABLE OF CONTENTS UC DAVIS NMR FACILITY BRUKER SHORT MANUAL FOR TOPSPIN 3.X VERSION 3 February, 2016 Disclaimer... 2 Conventions... 2 Routine 1D NMR Experiments Procedure for acquiring 1D Proton spectrum...
More informationNorth Carolina State University Department of Chemistry Varian NMR Training Manual
North Carolina State University Department of Chemistry Varian NMR Training Manual by J.B. Clark IV & Dr. S. Sankar 1 st Edition 05/15/2009 Section 1: Essential Operations for Basic 1D Spectra Preparing
More informationDCIF NMR Training Guide 401 MHz Bruker AVANCE III HD b401 last edit 3/11/2015
DCIF NMR Training Guide 401 MHz Bruker AVANCE III HD b401 last edit 3/11/2015 The Bruker AVANCE III HD 401 has a broadband (BBO) probe with a 1 H Channel and X-Channel tunable from (30-300 MHz). Both channels
More informationDriveWorksXpress Tutorial
2007 Rules Based Design Automation DriveWorksXpress Tutorial DriveWorks Ltd 01/23/2007 1 DriveWorksXpress Tutorial 1. Introduction Start by installing the Models to a NEW FOLDER on your C: Drive. You should
More informationRunning Multiple Experiments on the Same Sample Automatically. (multizg, spooler/queue, iconnmr)
Running Multiple Experiments on the Same Sample Automatically (multizg, spooler/queue, iconnmr) Multiple Experiment Setup If you have one sample that requires full characterization (e.g. 1 H, 13 C, COSY,
More information1D and 2D Experiments Step-by-Step Tutorial
1D and 2D Experiments Step-by-Step Tutorial Basic Experiments User Guide Version 004 The information in this manual may be altered without notice. BRUKER BIOSPIN accepts no responsibility for actions taken
More informationMNova Version Installation Instructions.
MNova Version 12.0.0 Installation Instructions. Note: This Document contains information for a new NMR user. Carefully read and accomplish each section before moving to the next. If you can t finish a
More informationBruker Avance 400 MHz Instructions
Bruker Avance 400 MHz Instructions General Policy: 1) All users must pass the training course before they will obtain their own access to the spectrometer. 2) A key to Bruker Avance 400 Room is accessible
More informationBruker AVANCE-360 User s Guide for the UWChemMRF
Bruker AVANCE-360 User s Guide for the UWChemMRF by CG Fry last revised: 2004.08.01 Bruker Avance360 Introduction Page 2 UWChemMRF User Guide for XwinNMR I. Introduction... 3 a) Account information...
More informationNMR Spectroscopy with VNMRJ & EZ NMR
NMR Spectroscopy with VNMRJ & EZ NMR Locally developed EZ NMR for VNMRJ versions 2.2D/2.3A Dr. Albin Otter Edited by: Mark Miskolzie Department of Chemistry University of Alberta Edmonton, Alberta T6G
More informationAgilent VnmrJ 3.2. Quick Start Guide
Agilent VnmrJ 3.2 Quick Start Guide VnmrJ 3.2 Interface 3 Overview 4 Prepare Sample 5 Load Sample 6 Enter Sample Information 7 Build Study Queue 8 Run Study Queue 8 Process Data 9 Plot Data 10 This Quick
More informationGemini-300, Manual Operation (version 1.0, 4Feb95) 1
Gemini-300, Manual Operation (version 1.0, 4Feb95) 1 I. GETTING STARTED (LOGGING IN, LOGGING OUT, USING THE NMR PROGRAM). A. Logging into the Gemini To login onto the Sun workstations, hit the return key.
More informationDEPT on the U400. 2A. Enter the Macro In the experiment that contains the 13 C spectrum, enter: macro to set up a DEPT experiment in exp2
UVU444 DEPT on the U400 FL-26JUL94CD PRELIMINARY INFORMATION 1) The DEPT (Distortionless Enhancement by Polarization Transfer) experiment is frequently used to identify the types of carbons (i.e., C, CH,
More informationONE DIMENSIONAL NMR SPECTROSCOPY. DPX 200 and DPX 300
1 1H, 13C, 15N, 19F and 31P ONE DIMENSIONAL NMR SPECTROSCOPY (Xwinnmr on PC, W2Kpro, version 3.5) on DPX 200 and DPX 300 Department of Chemistry University of Oslo February 2005 Version 1 (To be used from
More informationDelta V5 operation. Widetron Technologies Corp. Wu, Chung Ying. Progress through Synergy
Delta V5 operation Widetron Technologies Corp. Wu, Chung Ying Connect to spectrometer 1. Start Delta V5 (double click ). 2. Open Spectrometer Control (click ). 3. Select spectrometer on Available Instruments.
More informationNMR Tips for Shimming, Part I
NMR Tips for Shimming, Part I Computerized Shimming with the Tuning Algorithm William E. Hull Deutsches Krebsforschungszentrum 69120 Heidelberg, Germany Introduction The efficiency of automation with large
More informationPINMRF. Bruker Avance / AV NMR Spectrometers running TopSpin Training Supplement for Advanced 1D NMR Spectroscopy
PINMRF Bruker Avance / AV NMR Spectrometers running TopSpin Training Supplement for Advanced 1D NMR Spectroscopy INCLUDING: Avance DRX500-1 w/ 5mm TBI Probe - 367 WTHR Avance DRX500-2 w/ 5mm BBO or TXI
More informationField Maps. 1 Field Map Acquisition. John Pauly. October 5, 2005
Field Maps John Pauly October 5, 25 The acquisition and reconstruction of frequency, or field, maps is important for both the acquisition of MRI data, and for its reconstruction. Many of the imaging methods
More informationBasic Procedure 1D NMR Data Collection
Basic Procedure 1D NMR Data Collection Log into your UNIX account and start XWIN- NMR program At the prompt login:, type your (e.g. jdw, mmj, mjt) or click on your group icon (in some spectrometers
More informationNMR FACILITY DEPARTMENT OF CHEMISTRY University of Washington TOPSPIN 2.1 TRAINING NOTES
NMR FACILITY DEPARTMENT OF CHEMISTRY University of Washington TOPSPIN 2.1 TRAINING NOTES February 2011 rajan paranji CONTENTS Introduction 3 View of TOPSPIN INTERFACE 6 Operating the Bruker Spectrometer
More informationWorking with Controlled Fields in DLCS
Overall summary of procedure: Detailed procedures: Working with Controlled Fields in DLCS 1. For any data element that is controlled, first try to locate the term in a pull down list on the Data Entry
More informationMQC. Benchtop QA systems from the NMR specialists. Fast, accurate, and simple QA analysis for a broad range of applications
Benchtop QA systems from the NMR specialists Fast, accurate, and simple QA analysis for a broad range of applications Easy QA AnalysisMlysis Oxford Instrument is a world leader in the application of Nuclear
More informationOpen Access Manual for Superusers
NMR-Service LOC Tel: +41 1 632 29 33 Email: nmrservice@org.chem.ethz.ch Open Access Manual for Superusers 1. Sample preparation Make a homogeneous solution of ca. 20mg in exactly 0.7ml of deuterated solvent,
More informationSingle-sided Magnet Diffusion Measurements
Single-sided Magnet Diffusion Measurements Kuldeep S. Panesar April 2013 (kuldeep.panesar@gmail.com) Contents 1. Initial configuration... 2 2. Preparation for diffusion measurement... 5 3. Starting a diffusion
More informationColony Counting User Manual A D I V I S I O N O F S Y N O P T I C S L T D
ProtoCOL Colony Counting User Manual S Y N B I O S I S A D I V I S I O N O F S Y N O P T I C S L T D All possible care has been taken in the preparation of this publication, but Synoptics Limited accepts
More informationAgilent VnmrJ 3.2 for INOVA and MERCURYplus
Agilent VnmrJ 3.2 for INOVA and MERCURYplus Installation and Administration User Guide Agilent Technologies Notices Agilent Technologies, Inc. 2011 No part of this manual may be reproduced in any form
More informationCONTENTS 1D EXPERIMENTS D EXPERIMENTS APPENDIXES... 83
Jari Koivisto, Ph.D. Aalto University School of Science and Technology Faculty of Chemistry and Materials Sciences Department of Chemistry Bruker Avance DPX400 User Manual Basic and Advanced 1D and 2D
More informationTOCSY 15. Goto. Introduction Pulse Sequence Diagram AVANCE User s Guide Bruker 167
Chapter TOCSY 15 Introduction 15.1 Goto TOtal Correlation SpectroscopY provides a different mechanism of coherence transfer than COSY for 2D correlation spectroscopy in liquids. In TOCSY, cross peaks are
More informationRepetier-Host Documentation
Repetier-Host Documentation Installation Prerequisites Before you start with the installation, you should check if your computer meets the requirements. Currently available computers should have no problems
More informationRelease Notes Spinsight Version 4.1
Release Notes Spinsight Version 4.1 Spinsight 4.1 can be installed over any previous version of Spinsight. It is not necessary that you have 3.5.2 before installing 4.1. Details of new software features
More informationRepetier-Host Documentation
Repetier-Host Documentation Installation Prerequisites Before you start with the installation, you should check if your computer meets the requirements. Currently available computers should have no problems
More information2 Dimensional NMR User s Brief Guide
2D NMR Handout 7/17/18 Weiguo Hu 2 Dimensional NMR User s Brief Guide (This handout presumes your thorough familiarity with the 1D handout commands and their use!) Options There are a vast number of 2D
More informationBiomolecular NMR made easy
Biomolecular NMR made easy Benutzertagung -7. November und München 8.-9. November 2017 Innovation with Integrity Target users What s this parameter about? This can t be more complicated! How about I just
More informationAutomation. User Guide Pub. No Rev. A 01/22/10
Automation User Guide Pub. No. 91000168 Rev. A 01/22/10 Automation User Guide Pub. No. 91000168 Rev. A Copyright 2010 Varian, Inc. 2700 Mitchell Drive Walnut Creek, CA 94598 USA http://www.varianinc.com
More informationUser Guide: Liquids NMR
User Guide: Liquids NMR Varian NMR Spectrometer Systems With VNMR 6.1C Software Pub. No. 01-999161-00, Rev. A0800 User Guide: Liquids NMR Varian NMR Spectrometer Systems With VNMR 6.1C Software Pub. No.
More informationChemPack Queue. Automation Queue. Walkup Queue. Data Review
ChemPack Queue Automation Queue Walkup Queue Data Review 1 Automation Queue Automation Queue. Submit a sample to an automation Run Submit a sample to an automation File 2 Automation Queue Submit a sample
More informationminispec Automation Software User Manual Innovation with Integrity Version 006 AIC
minispec Automation Software User Manual Version 006 Innovation with Integrity AIC Copyright by Bruker Corporation All rights reserved. No part of this publication may be reproduced, stored in a retrieval
More information500 MHz Solution-state NMR Procedure. (Bruker AVANCE Machines running TopSpin under WINDOWS XP)
500 MHz Solution-state NMR Procedure (Bruker AVANCE Machines running TopSpin under WINDOWS XP) Jerry Hu, x7914, jghu@mrl.ucsb.edu Shamon Walker, x6079 shamonwalker@mrl.ucsb.edu Materials Research Laboratory
More informationCONNJUR Workflow Builder: Tutorial. Where to download:
CONNJUR Workflow Builder: Tutorial Part I: Introduction 1.1 About CONNJUR and CONNJUR Workflow Builder (CWB) The CONNJUR Project is to develop an open source integration environment for biomolecular NMR
More information