Cluster Analysis: Agglomerate Hierarchical Clustering
|
|
- Alexander George
- 5 years ago
- Views:
Transcription
1 Cluster Analysis: Agglomerate Hierarchical Clustering Yonghee Lee Department of Statistics, The University of Seoul Oct 29, 2015
2 Contents 1 Cluster Analysis Introduction Distance matrix Agglomerative Hierarchical Methods Example: Nearest neighbor linkage Example: Complete neighbor linkage Example: Group average linkage Remarks on Hierarchical Methods Nonhierarchical Clustering Methods
3 Classification vs Clustering Classification The known number of groups and group memberships for the training data Want to assign new observations to one of the groups Supervised learning (learning with teacher) Clustering No assumption for the number of groups and memberships No assumption for the structure of groups Unsupervised learning (learning without teacher) Use the values of the variables to devise an algorithm for grouping the objects into groups Similar s are in the same group Measure for distance (similarity)
4 Distance Measure Two p-dimensional vectors: x = (x 1, x 2,, x p ) and y = (y 1, y 2,, y p ) Euclidean distance d(x, y) = p (x y) (x y) = (x i y i ) 2 Statistical distance i=1 d(x, y) = (x y) A(x y) where usually A = S 1 and S is sample covariance matrix of x and y
5 Hierarchical Clustering Methods Definition (Hierarchical Methods) First, distances of all pairs of s are calculated Then groups are formed by a process of agglomeration or division Agglomerative Hierarchical method A series of successive merges Divisive Hierarchical method A series of successive divisions Dendrogram (Tree diagram): Two dimensional graph illustrating merges and divisions Agglomerative Hierarchical method: linkage methods Nearest neighbor linkage Complete neighbor linkage Group average linkage
6 Distance matrix of s Table : A distance matrix of five s sub
7 Agglomerative Hierarchical Clustering Methods Definition (Algorithm) 1 Start with N cluster containing one item and find N N symmetric matrix of distances D = {d ij } 2 Search the distance matrix for the nearest pair of clusters Let U and V be two nearest clusters 3 Merge the two clusters U and V and update the matrix of distances D 4 Repeat steps 2 and 3 a total of N 1 times Record the order of merges of clusters and their levels (distances)
8 Agglomerative Hierarchical Clustering Methods Linkage Methods: How to determine the distance of two clusters? Suppose two clusters U and V are merged and how to define new distance with the cluster W Nearest neighbor linkage: minimum distance d (UV )W = min(d U,W, d V,W ) Complete neighbor linkage: maximum distance d (UV )W = max(d U,W, d V,W ) Group average linkage: average distance d (UV )W = d ij /(N (UV ) N W ) i where object i belongs to (UV ) and j belongs to W k
9 Example: Nearest neighbor linkage Table : Nearest neighbor linkage: A distance matrix of five s sub Step 1 The minimum distance is 2 of two s 3 and 5 So s 3 and 5 are merged Recalculate the distance matrix such that d (3,5),1 = min(d (3,1), d (5,1) ) = min(3, 11) = 3 d (3,5),2 = min(d (3,2), d (5,2) ) = min(7, 10) = 7
10 Example: Nearest neighbor linkage Table : Nearest neighbor linkage - A distance matrix: after step 1 sub (3,5) (3,5) Step 2 The minimum distance is 3 between the 1 and the cluster (3,5) So the 1 and the cluster (3,5) are merged Recalculate the distance matrix such that d (1,3,5),2 = min(d (3,5),2, d (1,2) ) = min(7, 9) = 7 d (1,3,5),4 = min(d (3,5),4, d (1,4) ) = min(8, 6) = 6
11 Example: Nearest neighbor linkage Table : Nearest neighbor linkage - A distance matrix: after step 2 sub (1,3,5) 2 4 (1,3,5) Step 3 The minimum distance is 5 between the s 2 and 4 So the s 2 and 4 are merged Recalculate the distance matrix such that d (1,3,5),(2,4) = min(d (1,3,5),2, d (1,3,5),2 ) = min(7, 6) = 6
12 Example: Nearest neighbor linkage Table : Nearest neighbor linkage - A distance matrix: after step 3 sub (1,3,5) (2,4) (1,3,5) - (2,4) 6 - Finally, the cluster (1,3,5) and the cluster (2,4) are merged
13 Example: Complete neighbor linkage Table : Complete neighbor linkage: A distance matrix of five s sub Step 1 The minimum distance is 2 of two s 3 and 5 So s 3 and 5 are merged Recalculate the distance matrix such that d (3,5),1 = max(d (3,1), d (5,1) ) = max(3, 11) = 11 d (3,5),2 = max(d (3,2), d (5,2) ) = max(7, 10) = 10
14 Example: Complete neighbor linkage Table : Complete neighbor linkage - A distance matrix: after step 1 sub (3,5) (3,5) Step 2 The minimum distance is 5 between the s 2 and 4 So the s 2 and 4 are merged Recalculate the distance matrix such that d (2,4),(3,5) = max(d 2,(3,5), d 4,(3,5) ) = max(10, 9) = 10 d (2,4),1 = max(d 2,1, d 4,1 ) = max(9, 6) = 9
15 Example: Complete neighbor linkage Table : Complete neighbor linkage - A distance matrix: after step 2 sub (3,5) (2,4) 1 (3,5) - (2,4) Step 3 The minimum distance is 9 between the 1 and the cluster (2,4) So the 1 and the cluster (2,4) are merged Recalculate the distance matrix such that d (1,2,4),(3,5) = max(d 1,(3,5), d (2,4),(3,4) ) = max(11, 10) = 11
16 Example: Complete neighbor linkage Table : Complete neighbor linkage - A distance matrix: after step 3 sub (1,2,4) (3,5) (1,2,4) - (3,5) 11 - Finally, the cluster (1,2,4) and the cluster (3,5) are merged
17 Example: Group average linkage Table : Group average linkage - A distance matrix of five s sub Step 1 The minimum distance is 2 of two s 3 and 5 So s 3 and 5 are merged Recalculate the distance matrix such that d (3,5),1 = mean(d (3,1), d (5,1) ) = mean(3, 11) = (11 + 3)/2 = 7 d (3,5),2 = mean(d (3,2), d (5,2) ) = mean(7, 10) = (7 + 10)/2 = 85
18 Example: Group average linkage Table : Group average linkage - A distance matrix: after step 1 sub (3,5) (3,5) Step 2 The minimum distance is 5 between the s 2 and 4 So the s 2 and 4 are merged Recalculate the distance matrix such that d (2,4),(3,5) = mean(d 2,3, d 2,5, d 4,3, d 4,5 ) = mean(7, 10, 9, 8) = ( )/85 Calculations continue
19 Remarks on Hierarchical Methods Divisive Hierarchical methods have been used less often than Agglomerative Hierarchical Methods There are many (many) algorithms for cluster analysis, but there is no generally accepted best method Performance of cluster analysis depends on the shape of clusters, especially how clusters are overlapped (see pp 129 of textbook)
20 Nonhierarchical Clustering Methods The distance matrix D is not required The number of clusters is determined before or during the procedure Example: K- means method Algorithm for K-means method 1 Partition the item into K initial clusters, equivalently into K centroids (means) 2 Proceed through the list of items, assigning an item to the cluster whose centroid is nearest (example Euclidean distance) Recalculate the centroids for clusters losing and receiving the item 3 Repeat steps 2 until no more reassignings take place
Unsupervised Learning and Clustering
Unsupervised Learning and Clustering Selim Aksoy Department of Computer Engineering Bilkent University saksoy@cs.bilkent.edu.tr CS 551, Spring 2008 CS 551, Spring 2008 c 2008, Selim Aksoy (Bilkent University)
More informationWorking with Unlabeled Data Clustering Analysis. Hsiao-Lung Chan Dept Electrical Engineering Chang Gung University, Taiwan
Working with Unlabeled Data Clustering Analysis Hsiao-Lung Chan Dept Electrical Engineering Chang Gung University, Taiwan chanhl@mail.cgu.edu.tw Unsupervised learning Finding centers of similarity using
More informationCluster Analysis. Angela Montanari and Laura Anderlucci
Cluster Analysis Angela Montanari and Laura Anderlucci 1 Introduction Clustering a set of n objects into k groups is usually moved by the aim of identifying internally homogenous groups according to a
More informationUnsupervised Learning and Clustering
Unsupervised Learning and Clustering Selim Aksoy Department of Computer Engineering Bilkent University saksoy@cs.bilkent.edu.tr CS 551, Spring 2009 CS 551, Spring 2009 c 2009, Selim Aksoy (Bilkent University)
More informationClustering Results. Result List Example. Clustering Results. Information Retrieval
Information Retrieval INFO 4300 / CS 4300! Presenting Results Clustering Clustering Results! Result lists often contain documents related to different aspects of the query topic! Clustering is used to
More informationClustering CS 550: Machine Learning
Clustering CS 550: Machine Learning This slide set mainly uses the slides given in the following links: http://www-users.cs.umn.edu/~kumar/dmbook/ch8.pdf http://www-users.cs.umn.edu/~kumar/dmbook/dmslides/chap8_basic_cluster_analysis.pdf
More informationCluster Analysis. Prof. Thomas B. Fomby Department of Economics Southern Methodist University Dallas, TX April 2008 April 2010
Cluster Analysis Prof. Thomas B. Fomby Department of Economics Southern Methodist University Dallas, TX 7575 April 008 April 010 Cluster Analysis, sometimes called data segmentation or customer segmentation,
More informationClustering and Dimensionality Reduction. Stony Brook University CSE545, Fall 2017
Clustering and Dimensionality Reduction Stony Brook University CSE545, Fall 2017 Goal: Generalize to new data Model New Data? Original Data Does the model accurately reflect new data? Supervised vs. Unsupervised
More information10601 Machine Learning. Hierarchical clustering. Reading: Bishop: 9-9.2
161 Machine Learning Hierarchical clustering Reading: Bishop: 9-9.2 Second half: Overview Clustering - Hierarchical, semi-supervised learning Graphical models - Bayesian networks, HMMs, Reasoning under
More informationChapter 6: Cluster Analysis
Chapter 6: Cluster Analysis The major goal of cluster analysis is to separate individual observations, or items, into groups, or clusters, on the basis of the values for the q variables measured on each
More informationOlmo S. Zavala Romero. Clustering Hierarchical Distance Group Dist. K-means. Center of Atmospheric Sciences, UNAM.
Center of Atmospheric Sciences, UNAM November 16, 2016 Cluster Analisis Cluster analysis or clustering is the task of grouping a set of objects in such a way that objects in the same group (called a cluster)
More informationCS7267 MACHINE LEARNING
S7267 MAHINE LEARNING HIERARHIAL LUSTERING Ref: hengkai Li, Department of omputer Science and Engineering, University of Texas at Arlington (Slides courtesy of Vipin Kumar) Mingon Kang, Ph.D. omputer Science,
More informationAn Introduction to Cluster Analysis. Zhaoxia Yu Department of Statistics Vice Chair of Undergraduate Affairs
An Introduction to Cluster Analysis Zhaoxia Yu Department of Statistics Vice Chair of Undergraduate Affairs zhaoxia@ics.uci.edu 1 What can you say about the figure? signal C 0.0 0.5 1.0 1500 subjects Two
More informationBBS654 Data Mining. Pinar Duygulu. Slides are adapted from Nazli Ikizler
BBS654 Data Mining Pinar Duygulu Slides are adapted from Nazli Ikizler 1 Classification Classification systems: Supervised learning Make a rational prediction given evidence There are several methods for
More informationStatistics 202: Data Mining. c Jonathan Taylor. Clustering Based in part on slides from textbook, slides of Susan Holmes.
Clustering Based in part on slides from textbook, slides of Susan Holmes December 2, 2012 1 / 1 Clustering Clustering Goal: Finding groups of objects such that the objects in a group will be similar (or
More informationHierarchical clustering
Hierarchical clustering Based in part on slides from textbook, slides of Susan Holmes December 2, 2012 1 / 1 Description Produces a set of nested clusters organized as a hierarchical tree. Can be visualized
More informationCOMP33111: Tutorial and lab exercise 7
COMP33111: Tutorial and lab exercise 7 Guide answers for Part 1: Understanding clustering 1. Explain the main differences between classification and clustering. main differences should include being unsupervised
More informationMachine Learning. B. Unsupervised Learning B.1 Cluster Analysis. Lars Schmidt-Thieme
Machine Learning B. Unsupervised Learning B.1 Cluster Analysis Lars Schmidt-Thieme Information Systems and Machine Learning Lab (ISMLL) Institute for Computer Science University of Hildesheim, Germany
More informationTree Models of Similarity and Association. Clustering and Classification Lecture 5
Tree Models of Similarity and Association Clustering and Lecture 5 Today s Class Tree models. Hierarchical clustering methods. Fun with ultrametrics. 2 Preliminaries Today s lecture is based on the monograph
More informationClustering Part 3. Hierarchical Clustering
Clustering Part Dr Sanjay Ranka Professor Computer and Information Science and Engineering University of Florida, Gainesville Hierarchical Clustering Two main types: Agglomerative Start with the points
More informationUnsupervised Learning
Outline Unsupervised Learning Basic concepts K-means algorithm Representation of clusters Hierarchical clustering Distance functions Which clustering algorithm to use? NN Supervised learning vs. unsupervised
More information5/15/16. Computational Methods for Data Analysis. Massimo Poesio UNSUPERVISED LEARNING. Clustering. Unsupervised learning introduction
Computational Methods for Data Analysis Massimo Poesio UNSUPERVISED LEARNING Clustering Unsupervised learning introduction 1 Supervised learning Training set: Unsupervised learning Training set: 2 Clustering
More informationINF4820 Algorithms for AI and NLP. Evaluating Classifiers Clustering
INF4820 Algorithms for AI and NLP Evaluating Classifiers Clustering Erik Velldal & Stephan Oepen Language Technology Group (LTG) September 23, 2015 Agenda Last week Supervised vs unsupervised learning.
More informationCluster Analysis. Ying Shen, SSE, Tongji University
Cluster Analysis Ying Shen, SSE, Tongji University Cluster analysis Cluster analysis groups data objects based only on the attributes in the data. The main objective is that The objects within a group
More informationWhat is Clustering? Clustering. Characterizing Cluster Methods. Clusters. Cluster Validity. Basic Clustering Methodology
Clustering Unsupervised learning Generating classes Distance/similarity measures Agglomerative methods Divisive methods Data Clustering 1 What is Clustering? Form o unsupervised learning - no inormation
More informationMultivariate Analysis
Multivariate Analysis Cluster Analysis Prof. Dr. Anselmo E de Oliveira anselmo.quimica.ufg.br anselmo.disciplinas@gmail.com Unsupervised Learning Cluster Analysis Natural grouping Patterns in the data
More information10701 Machine Learning. Clustering
171 Machine Learning Clustering What is Clustering? Organizing data into clusters such that there is high intra-cluster similarity low inter-cluster similarity Informally, finding natural groupings among
More informationClustering. CE-717: Machine Learning Sharif University of Technology Spring Soleymani
Clustering CE-717: Machine Learning Sharif University of Technology Spring 2016 Soleymani Outline Clustering Definition Clustering main approaches Partitional (flat) Hierarchical Clustering validation
More informationClustering. Partition unlabeled examples into disjoint subsets of clusters, such that:
Text Clustering 1 Clustering Partition unlabeled examples into disjoint subsets of clusters, such that: Examples within a cluster are very similar Examples in different clusters are very different Discover
More informationCLUSTER ANALYSIS. V. K. Bhatia I.A.S.R.I., Library Avenue, New Delhi
CLUSTER ANALYSIS V. K. Bhatia I.A.S.R.I., Library Avenue, New Delhi-110 012 In multivariate situation, the primary interest of the experimenter is to examine and understand the relationship amongst the
More informationINF4820. Clustering. Erik Velldal. Nov. 17, University of Oslo. Erik Velldal INF / 22
INF4820 Clustering Erik Velldal University of Oslo Nov. 17, 2009 Erik Velldal INF4820 1 / 22 Topics for Today More on unsupervised machine learning for data-driven categorization: clustering. The task
More informationHard clustering. Each object is assigned to one and only one cluster. Hierarchical clustering is usually hard. Soft (fuzzy) clustering
An unsupervised machine learning problem Grouping a set of objects in such a way that objects in the same group (a cluster) are more similar (in some sense or another) to each other than to those in other
More informationCluster Analysis. Mu-Chun Su. Department of Computer Science and Information Engineering National Central University 2003/3/11 1
Cluster Analysis Mu-Chun Su Department of Computer Science and Information Engineering National Central University 2003/3/11 1 Introduction Cluster analysis is the formal study of algorithms and methods
More informationINF4820, Algorithms for AI and NLP: Hierarchical Clustering
INF4820, Algorithms for AI and NLP: Hierarchical Clustering Erik Velldal University of Oslo Sept. 25, 2012 Agenda Topics we covered last week Evaluating classifiers Accuracy, precision, recall and F-score
More informationData Informatics. Seon Ho Kim, Ph.D.
Data Informatics Seon Ho Kim, Ph.D. seonkim@usc.edu Clustering Overview Supervised vs. Unsupervised Learning Supervised learning (classification) Supervision: The training data (observations, measurements,
More information11/2/2017 MIST.6060 Business Intelligence and Data Mining 1. Clustering. Two widely used distance metrics to measure the distance between two records
11/2/2017 MIST.6060 Business Intelligence and Data Mining 1 An Example Clustering X 2 X 1 Objective of Clustering The objective of clustering is to group the data into clusters such that the records within
More informationHierarchical Clustering
Hierarchical Clustering Hierarchical Clustering Produces a set of nested clusters organized as a hierarchical tree Can be visualized as a dendrogram A tree-like diagram that records the sequences of merges
More informationClustering algorithms
Clustering algorithms Machine Learning Hamid Beigy Sharif University of Technology Fall 1393 Hamid Beigy (Sharif University of Technology) Clustering algorithms Fall 1393 1 / 22 Table of contents 1 Supervised
More informationMachine Learning (BSMC-GA 4439) Wenke Liu
Machine Learning (BSMC-GA 4439) Wenke Liu 01-31-017 Outline Background Defining proximity Clustering methods Determining number of clusters Comparing two solutions Cluster analysis as unsupervised Learning
More informationUnsupervised Learning : Clustering
Unsupervised Learning : Clustering Things to be Addressed Traditional Learning Models. Cluster Analysis K-means Clustering Algorithm Drawbacks of traditional clustering algorithms. Clustering as a complex
More informationGene Clustering & Classification
BINF, Introduction to Computational Biology Gene Clustering & Classification Young-Rae Cho Associate Professor Department of Computer Science Baylor University Overview Introduction to Gene Clustering
More informationHierarchical clustering
Aprendizagem Automática Hierarchical clustering Ludwig Krippahl Hierarchical clustering Summary Hierarchical Clustering Agglomerative Clustering Divisive Clustering Clustering Features 1 Aprendizagem Automática
More informationHierarchical Clustering
Hierarchical Clustering Produces a set of nested clusters organized as a hierarchical tree Can be visualized as a dendrogram A tree like diagram that records the sequences of merges or splits 0 0 0 00
More informationUnsupervised Learning
Unsupervised Learning Unsupervised learning Until now, we have assumed our training samples are labeled by their category membership. Methods that use labeled samples are said to be supervised. However,
More informationStatistics 202: Data Mining. c Jonathan Taylor. Week 8 Based in part on slides from textbook, slides of Susan Holmes. December 2, / 1
Week 8 Based in part on slides from textbook, slides of Susan Holmes December 2, 2012 1 / 1 Part I Clustering 2 / 1 Clustering Clustering Goal: Finding groups of objects such that the objects in a group
More informationCSE 5243 INTRO. TO DATA MINING
CSE 5243 INTRO. TO DATA MINING Cluster Analysis: Basic Concepts and Methods Huan Sun, CSE@The Ohio State University Slides adapted from UIUC CS412, Fall 2017, by Prof. Jiawei Han 2 Chapter 10. Cluster
More informationData Mining Cluster Analysis: Basic Concepts and Algorithms. Slides From Lecture Notes for Chapter 8. Introduction to Data Mining
Data Mining Cluster Analysis: Basic Concepts and Algorithms Slides From Lecture Notes for Chapter 8 Introduction to Data Mining by Tan, Steinbach, Kumar Tan,Steinbach, Kumar Introduction to Data Mining
More informationPart I. Hierarchical clustering. Hierarchical Clustering. Hierarchical clustering. Produces a set of nested clusters organized as a
Week 9 Based in part on slides from textbook, slides of Susan Holmes Part I December 2, 2012 Hierarchical Clustering 1 / 1 Produces a set of nested clusters organized as a Hierarchical hierarchical clustering
More informationData Mining Chapter 9: Descriptive Modeling Fall 2011 Ming Li Department of Computer Science and Technology Nanjing University
Data Mining Chapter 9: Descriptive Modeling Fall 2011 Ming Li Department of Computer Science and Technology Nanjing University Descriptive model A descriptive model presents the main features of the data
More informationClassification. Vladimir Curic. Centre for Image Analysis Swedish University of Agricultural Sciences Uppsala University
Classification Vladimir Curic Centre for Image Analysis Swedish University of Agricultural Sciences Uppsala University Outline An overview on classification Basics of classification How to choose appropriate
More informationMethods for Intelligent Systems
Methods for Intelligent Systems Lecture Notes on Clustering (II) Davide Eynard eynard@elet.polimi.it Department of Electronics and Information Politecnico di Milano Davide Eynard - Lecture Notes on Clustering
More informationCSE 5243 INTRO. TO DATA MINING
CSE 5243 INTRO. TO DATA MINING Cluster Analysis: Basic Concepts and Methods Huan Sun, CSE@The Ohio State University 09/25/2017 Slides adapted from UIUC CS412, Fall 2017, by Prof. Jiawei Han 2 Chapter 10.
More informationMachine Learning (BSMC-GA 4439) Wenke Liu
Machine Learning (BSMC-GA 4439) Wenke Liu 01-25-2018 Outline Background Defining proximity Clustering methods Determining number of clusters Other approaches Cluster analysis as unsupervised Learning Unsupervised
More informationIntroduction to Machine Learning. Xiaojin Zhu
Introduction to Machine Learning Xiaojin Zhu jerryzhu@cs.wisc.edu Read Chapter 1 of this book: Xiaojin Zhu and Andrew B. Goldberg. Introduction to Semi- Supervised Learning. http://www.morganclaypool.com/doi/abs/10.2200/s00196ed1v01y200906aim006
More informationDATA MINING LECTURE 7. Hierarchical Clustering, DBSCAN The EM Algorithm
DATA MINING LECTURE 7 Hierarchical Clustering, DBSCAN The EM Algorithm CLUSTERING What is a Clustering? In general a grouping of objects such that the objects in a group (cluster) are similar (or related)
More informationClustering Lecture 3: Hierarchical Methods
Clustering Lecture 3: Hierarchical Methods Jing Gao SUNY Buffalo 1 Outline Basics Motivation, definition, evaluation Methods Partitional Hierarchical Density-based Mixture model Spectral methods Advanced
More informationUnsupervised Learning
Harvard-MIT Division of Health Sciences and Technology HST.951J: Medical Decision Support, Fall 2005 Instructors: Professor Lucila Ohno-Machado and Professor Staal Vinterbo 6.873/HST.951 Medical Decision
More informationData Mining and Data Warehousing Henryk Maciejewski Data Mining Clustering
Data Mining and Data Warehousing Henryk Maciejewski Data Mining Clustering Clustering Algorithms Contents K-means Hierarchical algorithms Linkage functions Vector quantization SOM Clustering Formulation
More informationCluster Analysis for Microarray Data
Cluster Analysis for Microarray Data Seventh International Long Oligonucleotide Microarray Workshop Tucson, Arizona January 7-12, 2007 Dan Nettleton IOWA STATE UNIVERSITY 1 Clustering Group objects that
More informationHW4 VINH NGUYEN. Q1 (6 points). Chapter 8 Exercise 20
HW4 VINH NGUYEN Q1 (6 points). Chapter 8 Exercise 20 a. For each figure, could you use single link to find the patterns represented by the nose, eyes and mouth? Explain? First, a single link is a MIN version
More informationFinding Clusters 1 / 60
Finding Clusters Types of Clustering Approaches: Linkage Based, e.g. Hierarchical Clustering Clustering by Partitioning, e.g. k-means Density Based Clustering, e.g. DBScan Grid Based Clustering 1 / 60
More informationData Clustering Hierarchical Clustering, Density based clustering Grid based clustering
Data Clustering Hierarchical Clustering, Density based clustering Grid based clustering Team 2 Prof. Anita Wasilewska CSE 634 Data Mining All Sources Used for the Presentation Olson CF. Parallel algorithms
More informationCluster Analysis. Summer School on Geocomputation. 27 June July 2011 Vysoké Pole
Cluster Analysis Summer School on Geocomputation 27 June 2011 2 July 2011 Vysoké Pole Lecture delivered by: doc. Mgr. Radoslav Harman, PhD. Faculty of Mathematics, Physics and Informatics Comenius University,
More informationClustering. Robert M. Haralick. Computer Science, Graduate Center City University of New York
Clustering Robert M. Haralick Computer Science, Graduate Center City University of New York Outline K-means 1 K-means 2 3 4 5 Clustering K-means The purpose of clustering is to determine the similarity
More informationHierarchical Clustering 4/5/17
Hierarchical Clustering 4/5/17 Hypothesis Space Continuous inputs Output is a binary tree with data points as leaves. Useful for explaining the training data. Not useful for making new predictions. Direction
More informationIntroduction to Artificial Intelligence
Introduction to Artificial Intelligence COMP307 Machine Learning 2: 3-K Techniques Yi Mei yi.mei@ecs.vuw.ac.nz 1 Outline K-Nearest Neighbour method Classification (Supervised learning) Basic NN (1-NN)
More informationToday s lecture. Clustering and unsupervised learning. Hierarchical clustering. K-means, K-medoids, VQ
Clustering CS498 Today s lecture Clustering and unsupervised learning Hierarchical clustering K-means, K-medoids, VQ Unsupervised learning Supervised learning Use labeled data to do something smart What
More informationCase-Based Reasoning. CS 188: Artificial Intelligence Fall Nearest-Neighbor Classification. Parametric / Non-parametric.
CS 188: Artificial Intelligence Fall 2008 Lecture 25: Kernels and Clustering 12/2/2008 Dan Klein UC Berkeley Case-Based Reasoning Similarity for classification Case-based reasoning Predict an instance
More informationCS 188: Artificial Intelligence Fall 2008
CS 188: Artificial Intelligence Fall 2008 Lecture 25: Kernels and Clustering 12/2/2008 Dan Klein UC Berkeley 1 1 Case-Based Reasoning Similarity for classification Case-based reasoning Predict an instance
More informationUNSUPERVISED LEARNING IN R. Introduction to hierarchical clustering
UNSUPERVISED LEARNING IN R Introduction to hierarchical clustering Hierarchical clustering Number of clusters is not known ahead of time Two kinds: bottom-up and top-down, this course bottom-up Hierarchical
More informationUnsupervised Learning. Pantelis P. Analytis. Introduction. Finding structure in graphs. Clustering analysis. Dimensionality reduction.
March 19, 2018 1 / 40 1 2 3 4 2 / 40 What s unsupervised learning? Most of the data available on the internet do not have labels. How can we make sense of it? 3 / 40 4 / 40 5 / 40 Organizing the web First
More informationClustering: K-means and Kernel K-means
Clustering: K-means and Kernel K-means Piyush Rai Machine Learning (CS771A) Aug 31, 2016 Machine Learning (CS771A) Clustering: K-means and Kernel K-means 1 Clustering Usually an unsupervised learning problem
More informationCHAPTER 4: CLUSTER ANALYSIS
CHAPTER 4: CLUSTER ANALYSIS WHAT IS CLUSTER ANALYSIS? A cluster is a collection of data-objects similar to one another within the same group & dissimilar to the objects in other groups. Cluster analysis
More informationUnsupervised Learning. Presenter: Anil Sharma, PhD Scholar, IIIT-Delhi
Unsupervised Learning Presenter: Anil Sharma, PhD Scholar, IIIT-Delhi Content Motivation Introduction Applications Types of clustering Clustering criterion functions Distance functions Normalization Which
More informationUnsupervised Learning
Unsupervised Learning A review of clustering and other exploratory data analysis methods HST.951J: Medical Decision Support Harvard-MIT Division of Health Sciences and Technology HST.951J: Medical Decision
More informationMachine Learning and Data Mining. Clustering (1): Basics. Kalev Kask
Machine Learning and Data Mining Clustering (1): Basics Kalev Kask Unsupervised learning Supervised learning Predict target value ( y ) given features ( x ) Unsupervised learning Understand patterns of
More informationCluster analysis. Agnieszka Nowak - Brzezinska
Cluster analysis Agnieszka Nowak - Brzezinska Outline of lecture What is cluster analysis? Clustering algorithms Measures of Cluster Validity What is Cluster Analysis? Finding groups of objects such that
More informationAdministrative. Machine learning code. Supervised learning (e.g. classification) Machine learning: Unsupervised learning" BANANAS APPLES
Administrative Machine learning: Unsupervised learning" Assignment 5 out soon David Kauchak cs311 Spring 2013 adapted from: http://www.stanford.edu/class/cs276/handouts/lecture17-clustering.ppt Machine
More informationUniversity of Florida CISE department Gator Engineering. Clustering Part 2
Clustering Part 2 Dr. Sanjay Ranka Professor Computer and Information Science and Engineering University of Florida, Gainesville Partitional Clustering Original Points A Partitional Clustering Hierarchical
More informationClustering and Visualisation of Data
Clustering and Visualisation of Data Hiroshi Shimodaira January-March 28 Cluster analysis aims to partition a data set into meaningful or useful groups, based on distances between data points. In some
More informationData Mining. Dr. Raed Ibraheem Hamed. University of Human Development, College of Science and Technology Department of Computer Science
Data Mining Dr. Raed Ibraheem Hamed University of Human Development, College of Science and Technology Department of Computer Science 06 07 Department of CS - DM - UHD Road map Cluster Analysis: Basic
More informationIntroduction to Clustering
Introduction to Clustering Ref: Chengkai Li, Department of Computer Science and Engineering, University of Texas at Arlington (Slides courtesy of Vipin Kumar) What is Cluster Analysis? Finding groups of
More informationMeasure of Distance. We wish to define the distance between two objects Distance metric between points:
Measure of Distance We wish to define the distance between two objects Distance metric between points: Euclidean distance (EUC) Manhattan distance (MAN) Pearson sample correlation (COR) Angle distance
More informationhttp://www.xkcd.com/233/ Text Clustering David Kauchak cs160 Fall 2009 adapted from: http://www.stanford.edu/class/cs276/handouts/lecture17-clustering.ppt Administrative 2 nd status reports Paper review
More informationBased on Raymond J. Mooney s slides
Instance Based Learning Based on Raymond J. Mooney s slides University of Texas at Austin 1 Example 2 Instance-Based Learning Unlike other learning algorithms, does not involve construction of an explicit
More informationObjective of clustering
Objective of clustering Discover structures and patterns in high-dimensional data. Group data with similar patterns together. This reduces the complexity and facilitates interpretation. Expression level
More informationUnsupervised: no target value to predict
Clustering Unsupervised: no target value to predict Differences between models/algorithms: Exclusive vs. overlapping Deterministic vs. probabilistic Hierarchical vs. flat Incremental vs. batch learning
More informationNetwork Traffic Measurements and Analysis
DEIB - Politecnico di Milano Fall, 2017 Introduction Often, we have only a set of features x = x 1, x 2,, x n, but no associated response y. Therefore we are not interested in prediction nor classification,
More informationDimension reduction : PCA and Clustering
Dimension reduction : PCA and Clustering By Hanne Jarmer Slides by Christopher Workman Center for Biological Sequence Analysis DTU The DNA Array Analysis Pipeline Array design Probe design Question Experimental
More informationTOWARDS NEW ESTIMATING INCREMENTAL DIMENSIONAL ALGORITHM (EIDA)
TOWARDS NEW ESTIMATING INCREMENTAL DIMENSIONAL ALGORITHM (EIDA) 1 S. ADAEKALAVAN, 2 DR. C. CHANDRASEKAR 1 Assistant Professor, Department of Information Technology, J.J. College of Arts and Science, Pudukkottai,
More informationChapter 1. Using the Cluster Analysis. Background Information
Chapter 1 Using the Cluster Analysis Background Information Cluster analysis is the name of a multivariate technique used to identify similar characteristics in a group of observations. In cluster analysis,
More informationClustering. Chapter 10 in Introduction to statistical learning
Clustering Chapter 10 in Introduction to statistical learning 16 14 12 10 8 6 4 2 0 2 4 6 8 10 12 14 1 Clustering ² Clustering is the art of finding groups in data (Kaufman and Rousseeuw, 1990). ² What
More informationAN IMPROVED K-MEANS CLUSTERING ALGORITHM FOR IMAGE SEGMENTATION
AN IMPROVED K-MEANS CLUSTERING ALGORITHM FOR IMAGE SEGMENTATION WILLIAM ROBSON SCHWARTZ University of Maryland, Department of Computer Science College Park, MD, USA, 20742-327, schwartz@cs.umd.edu RICARDO
More informationInformation Retrieval and Organisation
Information Retrieval and Organisation Chapter 16 Flat Clustering Dell Zhang Birkbeck, University of London What Is Text Clustering? Text Clustering = Grouping a set of documents into classes of similar
More informationLecture Notes for Chapter 7. Introduction to Data Mining, 2 nd Edition. by Tan, Steinbach, Karpatne, Kumar
Data Mining Cluster Analysis: Basic Concepts and Algorithms Lecture Notes for Chapter 7 Introduction to Data Mining, 2 nd Edition by Tan, Steinbach, Karpatne, Kumar Hierarchical Clustering Produces a set
More informationMachine Learning and Data Mining. Clustering. (adapted from) Prof. Alexander Ihler
Machine Learning and Data Mining Clustering (adapted from) Prof. Alexander Ihler Overview What is clustering and its applications? Distance between two clusters. Hierarchical Agglomerative clustering.
More informationUnderstanding Clustering Supervising the unsupervised
Understanding Clustering Supervising the unsupervised Janu Verma IBM T.J. Watson Research Center, New York http://jverma.github.io/ jverma@us.ibm.com @januverma Clustering Grouping together similar data
More informationMidterm Examination CS540-2: Introduction to Artificial Intelligence
Midterm Examination CS540-2: Introduction to Artificial Intelligence March 15, 2018 LAST NAME: FIRST NAME: Problem Score Max Score 1 12 2 13 3 9 4 11 5 8 6 13 7 9 8 16 9 9 Total 100 Question 1. [12] Search
More informationComputational Statistics The basics of maximum likelihood estimation, Bayesian estimation, object recognitions
Computational Statistics The basics of maximum likelihood estimation, Bayesian estimation, object recognitions Thomas Giraud Simon Chabot October 12, 2013 Contents 1 Discriminant analysis 3 1.1 Main idea................................
More informationLecture 6: Unsupervised Machine Learning Dagmar Gromann International Center For Computational Logic
SEMANTIC COMPUTING Lecture 6: Unsupervised Machine Learning Dagmar Gromann International Center For Computational Logic TU Dresden, 23 November 2018 Overview Unsupervised Machine Learning overview Association
More information