Ontology Visualization
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1 Ontology Visualization 9 th International Protégé Conference Jennifer Vendetti, Stanford University
2 What is the graph widget? Allows visual editing of instances and relationships between instances Alternative to Protege Forms for entering instance data
3 When is the graph widget appropriate? When instances of a slot are connected as values of some slots (e.g. a linked list where one instance is linked to another through a slot relation) When instances of a slot are related by instances of the :DIRECTED-BINARY-RELATION system class
4 When is the graph widget appropriate? Speeds knowledge acquisition in ontologies with heavily interconnected concepts Helps convey meaning and organization of acquired knowledge Data that resembles process diagrams, flow charts, organizational charts
5 Open the GraphWidgetExample project Select the Organization class
6 Create the organization_chart slot
7 Configure organization_chart slot to use graph widget
8 How do I optimize size for the graph widget? Double-click on the Form background (anywhere without a widget) Use the Layout tab to fill horizontal and vertical space
9 How do I configure node appearance? Double-click on the organization_chart slot to bring up the widget configuration dialog.
10 How do I configure node appearance? Use the General tab to change the label or tooltip for the organization_chart slot. Use the Nodes tab to assign shapes, colors, and text properties to nodes.
11 Configure simple connectors Graph widget has two connector types, one of which is a simple connector Simple connectors have no underlying instances
12 Select the Editor class Create the responsible_for slot (type Instance, cardinality multiple)
13 Configure simple connectors Choose connector slot for Editor class in widget configuration dialog
14 Drag and drop nodes to create instances of employees draw connectors to fill in slot values
15 Graph widget UI tips Click on node labels to drag nodes Nodes are resizable Double-click node labels to rename Right-click connectors to insert points Automatic layout provided Save graph as image
16 Graph widget UI tips The graph widget only allows you to draw valid connectors between nodes You can add pre-existing instances to the graph widget
17 Configure reified relations Reified relations are the second connector type offered by the graph widget Allows storage of additional information about a relationship between two nodes
18 Subclass :DIRECTED-BINARY-RELATION to use reified relations in the graph widget
19 Designate a slot to hold instances of reified relations
20 Configure reified relations Use the reified relations tab to configure the relation slot, line types, colors, arrowheads, etc.
21 Reified relation between two instances of the Employee class
22 Graph widget UI Tips Double-click on complex links to bring up instance forms Designate display slots for subclasses of :DIRECTED-BINARY-RELATION to enable editing of connector labels
23 Multiple types of complex connectors are possible
24 OntoViz Tab Tab plug-ins provide larger scale visualization of ontologies (OntoViz, TGViz, Jambalaya, etc. OntoViz uses Graphviz from AT&T Research ( OntoViz is documented on the Protege Wiki:
25 OntoViz Tab: (helpful key for tab abbreviations) sub = subclass closure sup = superclass closure slx = slot extension isx = inverse slot extension slt = slots sle = slot edges ins = instances sys = system frames
26 OntoViz Tab Use the add class button to choose a class to graph Use the Options button to configure graph
27 Click the Create Graph button to generate graph
28 OntoViz screenshot
29 TGViz Tab Utilizes TouchGraph (renders networks as interactive graphs) TouchGraph uses Spring Layout PubMed uses TouchGraph to visualize graphs of related documents in medical libraries
30
31 Use the add class and add instance buttons to add items click the create graph button to graph
Ontology Visualization
Ontology Visualization 10 th International Protégé Conference July 15, 2007, 11:00 12:30PM CEST Jennifer Vendetti, Stanford University 1 What is the graph widget? Allows visual editing of instances and
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