Topic 12: Elementary Graph Algorithms
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1 Topic 12: Elementary Graph Algorithms Pierre Flener Lars-enrik Eriksson (version of )
2 Different kinds of graphs List Tree A B C A B C Directed Acyclic Graph (DAG) D A B C D E Directed Graph (Digraph) Undirected Graph E A B C D E A B C D E
3 Undirected Graph Example: A city map for pedestrians (edges are streets, nodes are intersections)
4 Directed Graph (Digraph) Example: A city map for cars (edges are one-way streets, nodes are intersections)
5 Directed & Undirected Graphs Node, vertex (plural: vertices) Edge Self-loop (edge from a node to itself) Adjacent nodes (connected by an edge) Degree (#edges from or to a node) In-degree (#edges to a node) Out-degree (#edges from a node) Path (sequence of adjacent nodes)
6 Representations of Graphs Adjacency-matrix representation: a 2-dimensional array A of 0/1 values, with A[i,j ] containing the number of arcs between nodes i and j (undirected graph), or from node i to node j (digraph) Adjacency-list representation: a 1-dimensional array Adj of adjacency lists, with Adj [i ] containing the list of nodes adjacent to node i
7 A B C D E F G I J K L M N F G I J K L M N A: B F G B: A C 1 1 C: B D G J D: C E J E: D I N F: A G: A C K J: C D I K L M 1 1 I: E J : A F K K: G J L: J 1 1 M: J N Note: For our convenience, ence, each ad djacency list is N: E M alphabetically ordered. A 1 B1 1 C D E
8 A B C D E F G I J K L M N F G I J K L M N A: B F 1 1 B: C 1 C: G J D: C E J 1 1 E: N F: G: 1 A K J: I L M 1 I: E 1 1 : A K K: G J 1 1 L: 1 M: N Note: For our convenience, ence, each ad djacency list is N: M alphabetically ordered. A 1 1 B 1 C D E 1 F G 1 J I
9 Representation of Graph (V,E) Representation choice depends on needs: Adjacency-matrix representation: + edge existence testing in Θ(1) time finding next outgoing edge in O( V ) time + compact representation for dense graphs (where E is close to V 2 ) Adjacency-list representation: + finding next outgoing edge in Θ(1) time edge existence testing in O( V ) time + compact representation for sparse graphs (where E is much smaller than V 2 )
10 Graph Traversals by breadth-first search (BFS) by depth-first search (DFS) BFS and DFS work on directed graphs as well as on undirected graphs (the examples below are for digraphs). BFS and DFS assume the given graph is represented using adjacency lists.
11 Graph Traversals Breadth-first search (BFS) Depth-first search (DFS)
12 BFS order (black) Queue (gray) A Given a source node, A. Paint the source gray. Paint other nodes white. Add the source to the initially empty first-in first-out (FIFO) queue of gray nodes. A: B F B: C C: G J D: C E J E: N F: G: A K J: I L M I: E : A K K: G J L: M: N N: M
13 BFS order (black) A Queue (gray) BF Dequeue head node, A. Paint its undiscovered (=white) adjacent nodes gray and enqueue them. Paint it black (all adjacent nodes are discovered). A: B F B: C C: G J D: C E J E: N F: G: A K J: I L M I: E : A K K: G J L: M: N N: M
14 BFS order (black) Queue (gray) A BF AB FC A: B F B: C C: G J D: C E J E: N F: G: A K J: I L M I: E : A K K: G J L: M: N N: M
15 BFS order (black) Queue (gray) A BF AB FC ABF C A: B F B: C C: G J D: C E J E: N F: G: A K J: I L M I: E : A K K: G J L: M: N N: M
16 BFS order (black) Queue (gray) A BF AB FC ABF C ABFC GJ A: B F B: C C: G J D: C E J E: N F: G: A K J: I L M I: E : A K K: G J L: M: N N: M
17 BFS order (black) Queue (gray) A BF AB FC ABF C ABFC GJ ABFC GJK A: B F B: C C: G J D: C E J E: N F: G: A K J: I L M I: E : A K K: G J L: M: N N: M
18 BFS order (black) Queue (gray) A BF AB FC ABF C ABFC GJ ABFC GJK A: B F B: C C: G J D: C E J E: N F: ABFCG JK G: ( A ) ( K ) J: I L M I: E : A K K: G J L: M: N N: M
19 BFS order (black) Queue (gray) A BF AB FC ABF C ABFC GJ ABFC GJK ABFCG JK ABFCGJ KILM A: B F B: C C: G J D: C E J E: N F: G: A K J: I L M I: E : A K K: G J L: M: N N: M
20 BFS order (black) Queue (gray) A BF AB FC ABF C ABFC GJ ABFC GJK ABFCG JK ABFCGJ KILM ABFCGJK ILM and so on A: B F B: C C: G J D: C E J E: N F: G: A K J: I L M I: E : A K ( ) K: G J L: M: N N: M ( ) ( )
21 BFS order (black) A AB ABF ABFC ABFC ABFCG ABFCGJ ABFCGJK ABFCGJKI ABFCGJKIL ABFCGJKILM ABFCGJKILME ABFCGJKILMEN Queue (gray) BF FC C GJ GJK JK KILM ILM LME ME EN N A: B F B: C C: G J D: C E J E: N F: G: A K J: I L M I: E : A K K: G J A B C D E L: M: N N: M May restart from white source D
22 Analysis of BFS for graph (V,E) (without any restarts) The initialisations take Θ(V) time. Each node is enqueued (in O(1) time) and dequeued (in O(1) time) at most once (because no node is ever repainted white), hence O(V) time for all queue operations. Each adjacency list is scanned at most once, and their total length is Θ(E), hence O(E) time for scanning adjacency lists. Aggregate analysis: O(V+E) time.
23 Refinements of BFS (at no increase in time complexity) Store the predecessor (or parent) of each newly discovered node (initially NIL, as undiscovered = white): breadth-first tree, rooted at source s. Store the distance (in #edges) from the source s to each newly discovered node (by adding 1 to the distance of its parent, with s being at distance 0): lengths of shortest paths from s to all reachable nodes.
24 Breadth-first tree from source A (without restart from D): A B C E
25 Graph Traversals Breadth-first search (BFS) Depth-first search (DFS)
26 Paint all nodes white. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN
27 The first white node, A, is the first source node. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN Paint the next undiscovered (=white) adjacent node gray and push it onto a stack before continuing on it (recursive case); if no such adjacent node (or: child ) is found, then pop the top node off the stack, paint it black (all adjacent nodes discovered), and stop (base case).
28 Continue to A s first undiscovered child, B. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN
29 Continue to B s first undiscovered child, C. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN
30 Continue to C s first undiscovered child, G. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN
31 Continue Start at Ato G s first undiscovered child, K. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN
32 Continue to K s first undiscovered child,. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN
33 has no undiscovered child, backtrack until we find node K, with undiscovered child J. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN
34 Continue to J s first undiscovered child, I. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN IJKGCBADEFLMN
35 Continue to I s first undiscovered child, E. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN IJKGCBADEFLMN EIJKGCBADFLMN
36 Continue to E s first undiscovered child, N. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN IJKGCBADEFLMN EIJKGCBADFLMN NEIJKGCBADFLM
37 Continue to N s first undiscovered child, M. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN IJKGCBADEFLMN EIJKGCBADFLMN NEIJKGCBADFLM MNEIJKGCBADFL
38 M has no undiscovered child, backtrack until we find node J, with undiscovered child L. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN IJKGCBADEFLMN EIJKGCBADFLMN NEIJKGCBADFLM MNEIJKGCBADFL MNEI LJKGCBADF
39 L has no undiscovered child, backtrack until we find node A, with undiscovered child F. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN IJKGCBADEFLMN EIJKGCBADFLMN NEIJKGCBADFLM MNEIJKGCBADFL MNEI LJKGCBADF MNEILJKGCB FAD
40 F has no undiscovered child; the backtrack clears the stack. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN IJKGCBADEFLMN EIJKGCBADFLMN NEIJKGCBADFLM MNEIJKGCBADFL MNEI LJKGCBADF MNEILJKGCB FAD MNEILJKGCBFA D
41 Restart from next white node, D, as source. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN IJKGCBADEFLMN EIJKGCBADFLMN NEIJKGCBADFLM MNEIJKGCBADFL MNEI LJKGCBADF MNEILJKGCB FAD MNEILJKGCBFA D
42 D has no undiscovered child; backtrack; done. DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN IJKGCBADEFLMN EIJKGCBADFLMN NEIJKGCBADFLM MNEIJKGCBADFL MNEI LJKGCBADF MNEILJKGCB FAD MNEILJKGCBFA D MNEILJKGCBFAD
43 DFS order (of pushing): ABCGKJIENMLFD DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN IJKGCBADEFLMN EIJKGCBADFLMN NEIJKGCBADFLM MNEIJKGCBADFL MNEI LJKGCBADF MNEILJKGCB FAD MNEILJKGCBFA D MNEILJKGCBFAD DFS order
44 Analysis of DFS for graph (V,E) (with restarts) Initialisations and restarts take Θ(V) time. Each node is visited exactly once (because no node is ever repainted white). Each adjacency list is scanned exactly once, and their total length is Θ(E), hence Θ(E) time for scanning adjacency lists. Aggregate analysis: Θ(V+E) time. It takes time linear in the size of the graph.
45 Refinements of DFS (at no increase in time complexity) Store the predecessor (or parent) of each newly discovered node (initially NIL, as undiscovered = white): depth-first forest of depth-first trees that are rooted at the chosen source nodes. Store the timestamps of discovering (graying) and finishing (blackening) each node: useful in many graph algorithms (for example: topological sort, see below).
46 Depth-first forest (of depth-first trees) DFS finish order (black) Stack (gray) Rest (white) ABCDEFGIJKLMN BACDEFGIJKLMN CBADEFGIJKLMN GCBADEFIJKLMN KGCBADEFIJLMN KGCBADEFIJLMN JKGCBADEFILMN IJKGCBADEFLMN EIJKGCBADFLMN NEIJKGCBADFLM MNEIJKGCBADFL MNEI LJKGCBADF MNEILJKGCB FAD MNEILJKGCBFA D MNEILJKGCBFAD
47 Depth-first forest Another depth-first forest, starting from D Starting from L, then M, then J, then K, then D
48 Strongly Connected Components of a Digraph Strongly connected component (SCC): maximal set of nodes where there is a path from each node to each other node. Many algorithms first divide a digraph into its SCCs, then process these SCCs separately, and finally combine the subsolutions. (This is not divide-&-conquer!) An undirected graph can be decomposed into its connected components.
49 Strongly Connected Components of a Digraph Strongly connected component (SCC): maximal set of nodes where there is a path from each node to each other node.
50 Strongly Connected Components of a Digraph Strongly connected component (SCC): maximal set of nodes where there is a path from each node to each other node.
51 Computing the Strongly Connected Components of a Digraph G 1. Enumerate the nodes of G in DFS finish order, starting from any node 2. Compute the transpose G T (that is, reverse all edges) 3. Make a DFS in G T, considering nodes in reverse finish order from original DFS 4. Each tree in this depth-first forest is a strongly connected component
52 G DFS finish order of G: Reverse DFS finish order of G: G T MNEILJKGCBFAD DAFBCGKJLIENM
53 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM
54 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM
55 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM
56 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM
57 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM
58 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM
59 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM D BC KGAFJLIENM
60 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM D BC KGAFJLIENM D BC FKGAJLIENM
61 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM D BC KGAFJLIENM D BC FKGAJLIENM D BCFKGA JLIENM
62 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM D BC KGAFJLIENM D BC FKGAJLIENM D BCFKGA JLIENM D BCFKGA J LIENM
63 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM D BC KGAFJLIENM D BC FKGAJLIENM D BCFKGA JLIENM D BCFKGA J LIENM D BCFKGA J L IENM
64 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM D BC KGAFJLIENM D BC FKGAJLIENM D BCFKGA JLIENM D BCFKGA J LIENM D BCFKGA J L IENM D BCFKGA J L I ENM
65 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM D BC KGAFJLIENM D BC FKGAJLIENM D BCFKGA JLIENM D BCFKGA J LIENM D BCFKGA J L IENM D BCFKGA J L I ENM D BCFKGA J L I E NM
66 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM D BC KGAFJLIENM D BC FKGAJLIENM D BCFKGA JLIENM D BCFKGA J LIENM D BCFKGA J L IENM D BCFKGA J L I ENM D BCFKGA J L I E NM D BCFKGA J L I E MN
67 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM D BC KGAFJLIENM D BC FKGAJLIENM D BCFKGA JLIENM D BCFKGA J LIENM D BCFKGA J L IENM D BCFKGA J L I ENM D BCFKGA J L I E NM D BCFKGA J L I E MN D BCFKGA J L I E MN
68 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM D BC KGAFJLIENM D BC FKGAJLIENM D BCFKGA JLIENM D BCFKGA J LIENM D BCFKGA J L IENM D BCFKGA J L I ENM D BCFKGA J L I E NM D BCFKGA J L I E MN D BCFKGA J L I E MN
69 DFS finish order (black) Stack (gray) Rest (white) DAFBCGKJLIENM D AFBCGKJLIENM D GAFBCKJLIENM D CGAFBKJLIENM D BCGAFKJLIENM D BC KGAFJLIENM D BC KGAFJLIENM D BC FKGAJLIENM D BCFKGA JLIENM D BCFKGA J LIENM D BCFKGA J L IENM D BCFKGA J L I ENM D BCFKGA J L I E NM D BCFKGA J L I E MN D BCFKGA J L I E MN
70 D E A B C F G K J I L M N
71 Analysis of decomposition into SCCs of digraph G=(V,E) Assume G is represented by adjacency lists: 1. DFS in G: Θ(V+E) time, including reversal 2. Compute transpose G T : Θ(V+E) time 3. DFS in G T : Θ(V+E) time 4. Output SCCs: Θ(V+E) time Total: Θ(V+E) time A strongly connected digraph has one SCC.
72 TOPOLOGICAL SORT A topological sort is a linear ordering of all nodes of a directed acyclic graph (DAG). If there is a path from node n i to node n j then n i appears before n j in the ordering. Note on DAGs: There is no cycle (path from node to itself) There is at least one node of in-degree 0 There is at least one node of out-degree 0
73 TOPOLOGICAL SORT Example: We are given courses at a university and the prerequisite relations between. These can be modelled as a DAG. A topological sort of these courses gives a valid sequence of taking them.
74 TOPOLOGICAL SORT Intro IT PKD DArk Dig AD2 Av Algo AI
75 TOPOLOGICAL SORT Intro IT PKD Node with in-degree 0 DArk Dig AD2 AI Av Algo
76 TOPOLOGICAL SORT Intro IT PKD DArk Dig AD2 AI Av Algo Nodes with out-degree 0
77 TOPOLOGICAL SORT Intro IT PKD DArk Dig AD2 AI Av Algo Select node with in-degree 0 Output it Remove it Repeat
78 TOPOLOGICAL SORT Intro IT PKD DArk Dig AD2 AI Av Algo Select IntroIT
79 TOPOLOGICAL SORT Intro IT PKD DArk Dig AD2 AI Av Algo Select IntroIT Output IntroIT IntroIT
80 TOPOLOGICAL SORT PKD DArk Dig AD2 AI Av Algo Select IntroIT Output IntroIT Remove it IntroIT
81 TOPOLOGICAL SORT PKD DArk Dig AD2 AI Av Algo Select PKD IntroIT
82 TOPOLOGICAL SORT PKD DArk Dig AD2 AI Av Algo Select PKD Output PKD IntroIT, PKD
83 TOPOLOGICAL SORT DArk Dig AD2 AI Av Algo Select PKD Output PKD Remove it IntroIT, PKD
84 TOPOLOGICAL SORT DArk Dig AD2 AI Av Algo Select DArkDig IntroIT, PKD
85 TOPOLOGICAL SORT DArk Dig AD2 AI Av Algo Select DArkDig Output DArkDig IntroIT, PKD, DArkDig
86 TOPOLOGICAL SORT AD2 AI Av Algo Select DArkDig Output DArkDig Remove it IntroIT, PKD, DArkDig
87 TOPOLOGICAL SORT AD2 AI Av Algo Select AI IntroIT, PKD, DArkDig
88 TOPOLOGICAL SORT AD2 AI Av Algo Select AI Output AI IntroIT, PKD, DArkDig, AI
89 TOPOLOGICAL SORT AD2 Av Algo Select AI Output AI Remove it IntroIT, PKD, DArkDig, AI
90 TOPOLOGICAL SORT AD2 Av Algo Select AD2 IntroIT, PKD, DArkDig, AI
91 TOPOLOGICAL SORT AD2 Av Algo Select AD2 Output AD2 IntroIT, PKD, DArkDig, AI, AD2
92 TOPOLOGICAL SORT Av Algo Select AD2 Output AD2 Remove it IntroIT, PKD, DArkDig, AI, AD2
93 TOPOLOGICAL SORT Av Algo Select AvAlgo IntroIT, PKD, DArkDig, AI, AD2
94 TOPOLOGICAL SORT Av Algo Select AvAlgo Output AvAlgo IntroIT, PKD, DArkDig, AI, AD2, AvAlgo
95 TOPOLOGICAL SORT Select AvAlgo Output AvAlgo Remove it IntroIT, PKD, DArkDig, AI, AD2, AvAlgo
96 TOPOLOGICAL SORT A topological sort is not necessarily unique: At any step, we may have more than one node with in-degree 0, so we have to choose one among them. IntroIT, PKD, AI, DArkDig, AD2, AvAlgo is also a valid sequence.
97 Other Algorithm and Analysis of Topological Sort Algorithm: Compute DFS finish time of each node; as each node is finished (blackened), insert it onto the front of an initially empty linked list; return that list. The total running time is thus Θ(V+E).
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