Agenda. Clarification of issues Quarter definition Steering and Executive Committee composition Dissemination and community outreach activities
|
|
|
- Kenneth Elliott
- 5 years ago
- Views:
Transcription
1 Agenda Clarification of issues Quarter definition Steering and Executive Committee composition Dissemination and community outreach activities Progress and updates Y1Q3 and plans for Y1Q4 Plan for the 8 Administrative Supplements
2 Quarter Definition Year 1 11 months Year 2 12 months Year 3 12 months Q1 09/30/14 Start Q1 09/01/15 Start Q1 09/01/16 Start Q2 12/31/14 Q3 03/31/15 Q4 06/31/15-08/31/15 2 months only Q2 12/01/15 Q3 03/01/16 Q4 06/01/16-08/31/16 Q2 12/01/16 Q3 03/01/17 Q4 06/01/17-08/31/17
3 Steering Committee Name Ian Fore Jennie Larkin Dawei Lin Ron Margolis Alison Yao NIH NIH NIH NIH NIH Institution Lucila Ohno-Machado Jeffrey Grethe George Alter Susanna-Assunta Sansone Hua Xu University of California San Diego University of California San Diego ICPSR, University of Michigan University of Oxford and Nature Publishing Group University of Texas Houston
4 Executive Committee Name Ian Fore Lucila Ohno-Machado Jeffrey Grethe George Alter Susanna-Assunta Sansone Hua Xu Institution NIH University of California San Diego University of California San Diego ICPSR, University of Michigan University of Oxford and Nature Publishing Group University of Texas Houston
5 Dissemination and Community Outreach Activities RFA for Pilot Project on Harvester Working Groups
6 Progress and Updates / Plans Y1Q4 Working Group 1 BD2K Centers of Excellence Collaboration Working Group 2 Data Identifiers Recommendation Working Group 3 Metadata Specifications Core Development Team
7 WG1 Collaboration with 4 BD2K centers (+3 attempts) Haussler (genomics D2K), Kohane (patient D2K), Kumar (mobile D2K) selected count queries across data types, expand Beacons Ping (heart D2K) selected ELIXIR Oxford and Ins Sys Biol (Seattle) Craven (D2 Predictive Models) not selected redundant data identification, linking the same person across data sets Musen (ontologies 2K) not selected needs assessment for data used by centers (Oxford) Maayan LINCS supplement submitted ranking visualization, crowdsourcing (with pilot 2.1) 2 Haussler supplements submitted: a. ATHENA breast cancer sequences+clinical data, b. Hashed IDs for observations
8 WG2 - Identifiers Will operate in two phases Phase 1 will review specifications, to be used in the initial prototype, for how the biocaddie DDI prototype will identify external datasets and resources. Deliverables for the Core Development Group June - July Phase 2 will more broadly address the long-term community needs specifying best practices and operating procedures for identifiers. Broader community engagement August onwards
9 WG2 - Identifiers 5 min Task/Description/Topic Date Final input for Phase I invitees 5/26 Summary material and initial agenda sent to WG2 members Present initial draft for DDI prototype s handling of identifiers; solicit feedback Review comments on draft of best practices and operating procedures for internal handling of identifiers that support the intended capability of the DDI prototype 6/8 6/11 6/25 Finalize Deliverable: Report to Core Dev Group for internal Data Identifier handling 7/9 Final input for Phase II invitees 7/23 Initial draft of Phase II scope 8/20
10 WG3 Metadata (Sansone) Full description: goals, synergies, phases, members & files Phase 1: core metadata (May-July 2015) Joint effort with CEDAR centre Synergies with BD2K Metadata WG (Musen/Alter) and ELIXIR activities External experts invited: Tanya Barrett Helen Berman Michael Braxenthaler Allen Dearry Michel Dumontier Carole Goble Melissa Haendal Marcelline Harris Michael Huerta Kevin Read Joan Starr Weida Tong Rai Winslow Dependency: WG4 Use Cases and Test Benchmarks
11 WG3 Metadata, phase 1; activities 1 Standard operating procedure document: to identify metadata descriptors and track their provenance from community standards, data models etc 2 List of competency questions, highlighting metadata: consolidate list from use cases workshop, white paper
12 WG3 Metadata, phase 1; activities 3 Mapping files: generic metadata schemas
13 WG3 Metadata, phase 1; activities 3 Mapping files: generic metadata schemas and life science specific
14 WG3 Metadata, phase 1, May-July 2015 Task/Description/Topic Date Metadata standards, selection and mapping - First iteration completed 5/28 Telecon (biocaddie staff only): discuss consolidated list of use cases 5/28 Core metadata elements selected, against use cases, and passed to Dev Team 6/11 Telecon (biocaddie staff only): review core metadata elements 6/11 Summary material ready for presentation to and review by WG3 members (external experts and biocaddie staff) Telecon (all WG3 members): present initial mapping, selected core metadata elements and use cases to WG3 members; solicit feedback 6/18 6/18 Feedback collected Core metadata reviewed, as needed 7/2 Mapping, core metadata elements and use cases packaged for final release 7/16
15 Core Dev. Team - Task assignment Task Responsible Team - Development site setup architecture design Claudiu (UCSD) Data Harvest - Repository resource management - Repository data import - Curation - Crawler Claudiu/Jeff (UCSD) Metadata management - Biomedical terminology service - Metadata management - Map data set description to standard metadata - Indexing Cui/Hua (UTHealth) Jeff (UCSD) Search engine/web portal - UI, workflow, usability Todd/Hua (UTHealth) - Advanced search strategies (e.g., query expansion, ranking), benchmark datasets Trevor/Hua (UTHealth) /Jeff (UCSD)
16 Core Dev. Team -Task assignment Task Due Set up the webportal datamed.biocaddie.org 6/31 (ongoing) Data ingestion process PDB dataset dbgap dataset LINCS (BD2K) dataset? Ontology web services Pilot project integration PP 1.1 and PP 2.2 PP 2.1 UI Development Use Cases and benchmark dataset development User needs survey Completed Ongoing To be decided Ongoing Ongoing Initiated Ongoing 8/31 (ongoing) 8/31 (ongoing)
17 Data Indexing Pipeline 1. Configuration file developed by curator 2. Extraction of metadata/data from data resource or dataset via ingestion module Cache information for further processing 3. Process metadata/data via sequential set of processing modules e.g. ID conversion, keyword extraction, data normalization 4. Mapping of metadata/data to metadata model(s) 5. Export to target endpoint(s)via export modules 6. Search via ElasticSearch APIs
18 Data Indexing Pipeline Current Technologies 1. JSON based documents and services 2. mongodb (Apache 2 license) being used to manage cached dataset description documents 3. Processing pipeline components can take advantage of cloud deployment for scalability 4. Document processing coordinated via messaging queue (Apache ActiveMQ (Apache 2 license)) 5. ElasticSearch (Apache 2 license) being used as index endpoint Simple cloud deployment and management Sophisticated RESTful API Advanced index customization Full power of lucene and plug-ins
19 UI/Search workflow Query Entry Identify Entities Expand (synonyms, hyponyms) Execute query ElasticSearch BioCADDIE backend Terminology Server Organize results Facets General present format Visualization Advanced filters
20 Deliverables
Executive Committee Meeting
Executive Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Susanna-Assunta Sansone, PhD. Metadata WG3 chair.
Susanna-Assunta Sansone, PhD Metadata WG3 chair 3-workgroup@biocaddie.org WG3 Metadata v v Full description: goals, synergies, phases, members & files Joint effort with BD2K Center for Expanded Data Annotation
Executive Committee Meeting
Executive Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Steering Committee Meeting
Steering Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Executive Committee Meeting
Executive Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Minutes. Date: Location: UCSD BRF2 5A03. Attendees Present
Executive Committee Meeting Location: UCSD BRF2 5A03 Date: 8-16-16 Start time: 10:00 am PDT End time: 11:30 am PDT Meeting Objective Attendees Present Minute Taker Executive Committee Meeting UCSD: Lucila
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Steering Committee Meeting
Steering Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Metadata Ingestion and Processinng
biomedical and healthcare Data Discovery Index Ecosystem Ingestion and Processinng Jeffrey S. Grethe, Ph.D. 2017 BioCADDIE All Hands Meeting prototype Ingestion Indexing Repositories Ingestion ElasticSearch
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Steering Committee Meeting
Steering Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please isit: https://www.readytalk.com/account-administration/international-numbers
Steering Committee Meeting
Steering Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
The Final Updates. Philippe Rocca-Serra Alejandra Gonzalez-Beltran, Susanna-Assunta Sansone, Oxford e-research Centre, University of Oxford, UK
The Final Updates Supported by the NIH grant 1U24 AI117966-01 to UCSD PI, Co-Investigators at: Philippe Rocca-Serra Alejandra Gonzalez-Beltran, Susanna-Assunta Sansone, Oxford e-research Centre, University
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Executive Committee Meeting
Executive Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Harmonizing biocaddie Metadata Schemas for Indexing Clinical Research Datasets Using Semantic Web Technologies
Harmonizing biocaddie Metadata Schemas for Indexing Clinical Research Datasets Using Semantic Web Technologies Harold R. Solbrig 1, Guoqian Jiang 1 1 Mayo Clinic College of Medicine, Rochester, MN [solbrig.harold,
eveloping DataMed the current status
eeloping DataMed the current status Hua Xu Core Deelopment Team (CDT) biocaddie AHM 2017 8/8/17 Supported by the NIH grant 1U24 AI117966-01 to the Uniersity of California, San Diego 1 Outline CDT Roles
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
A Data Citation Roadmap for Scholarly Data Repositories
A Data Citation Roadmap for Scholarly Data Repositories Tim Clark (Harvard Medical School & Massachusetts General Hospital) Martin Fenner (DataCite) Mercè Crosas (Institute for Quantiative Social Science,
LIBER Webinar: A Data Citation Roadmap for Scholarly Data Repositories
LIBER Webinar: A Data Citation Roadmap for Scholarly Data Repositories Martin Fenner (DataCite) Mercè Crosas (Institute for Quantiative Social Science, Harvard University) May 15, 2017 2014 Joint Declaration
The NIH Big Data to Knowledge Initiative: Raising the Prominence of Data
The NIH Big Data to Knowledge Initiative: Raising the Prominence of Data Michael F. Huerta, Ph.D. Associate Director, National Library of Medicine Director, Office of Health Information Programs Development
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Metadata Discovery and Integration to Support Repurposing of Heterogeneous Data using the OpenFurther Platform
Metadata Discovery and Integration to Support Repurposing of Heterogeneous Data using the OpenFurther Platform biocaddie All Hands Meeting September 11 th, 2016 Ram Gouripeddi & Julio Facelli Department
The OAIS Reference Model: current implementations
The OAIS Reference Model: current implementations Michael Day, UKOLN, University of Bath m.day@ukoln.ac.uk Chinese-European Workshop on Digital Preservation, Beijing, China, 14-16 July 2004 Presentation
Data publication and discovery with Globus
Data publication and discovery with Globus Questions and comments to outreach@globus.org The Globus data publication and discovery services make it easy for institutions and projects to establish collections,
What s Out There and Where Do I find it: Enterprise Metacard Builder Resource Portal
What s Out There and Where Do I find it: Enterprise Metacard Builder Resource Portal Gary W. Allen, PhD Project Manager Joint Training Integration and Evaluation Center Orlando, FL William C. Riggs Senior
Powering Knowledge Discovery. Insights from big data with Linguamatics I2E
Powering Knowledge Discovery Insights from big data with Linguamatics I2E Gain actionable insights from unstructured data The world now generates an overwhelming amount of data, most of it written in natural
P1752 Working Group Meeting
P1752 Working Group Meeting Sponsored by IEEE Engineering in Medicine & Biology (EMB) Standards Committee 26 June 2018 Teleconference Attendance This document shows attendance from previous calls https://tinyurl.com/yc3oxg6q
Creating a Recommender System. An Elasticsearch & Apache Spark approach
Creating a Recommender System An Elasticsearch & Apache Spark approach My Profile SKILLS Álvaro Santos Andrés Big Data & Analytics Solution Architect in Ericsson with more than 12 years of experience focused
INSPIRE tools What's new?
INSPIRE tools What's new? Michael Lutz INSPIRE Conference, Antwerp 18 September 2018 Joint Research Centre The European Commission s science and knowledge service INSPIRE reference validator Why a reference
Jisc Research Data Discovery Service Project Workshop Christopher Brown
18 Feb 2016 Jisc Research Data Discovery Service Project Workshop Christopher Brown Agenda» 10:30 10:40 Welcome and Introduction - Catherine Grout» 10:40 10:45 Project status and introduction to workshop/exercise
ProQuest Dissertations and Theses Overview. Austin McLean and Marlene Coles CGS Summer Workshop, July 2017
ProQuest Dissertations and Theses Overview Austin McLean and Marlene Coles CGS Summer Workshop, July 2017 Agenda Dissertations and ProQuest Short form video Pilot Project 2 A mission that aligns with universities
Powering Official Statistics at Statistics New Zealand with DDI-L and Colectica
Powering Official Statistics at Statistics New Zealand with DDI-L and A Case Study Authors 2 Adam Brown adam.brown@stats.govt.nz Jeremy Iverson jeremy@colectica.com Sally Vermaaten sally.vermaaten@stats.govt.nz
ICOPER - Interoperable Content for Performance in a Competency-driven Society
ICOPER - Interoperable Content for Performance in a Competency-driven Society Bernd Simon, Michael Totschnig (Presenter) bernd.simon michael.totschnig@wu-wien.ac.at Institute for Information Systems and
Next Generation Library Catalogs: opportunities. September 26, 2008
Next Generation Library Catalogs: Local developments and research opportunities Derek e Rodriguez, TRLN September 26, 2008 Overview Introduction to TRLN Scope and goals of the TRLN Endeca Project Project
Business Model for Global Platform for Big Data for Official Statistics in support of the 2030 Agenda for Sustainable Development
Business Model for Global Platform for Big Data for Official Statistics in support of the 2030 Agenda for Sustainable Development Introduction This note sets out a business model for a Global Platform
Dataverse and DataTags
NFAIS Open Data Fostering Open Science June 20, 2016 Dataverse and DataTags Mercè Crosas, Ph.D. Chief Data Science and Technology Officer Institute for Quantitive Social Science Harvard University @mercecrosas
ICGI Recommendations for Federal Public Websites
Get Email Updates Change Text Size A - Z Index Contact Us About Us Site Policies Suggest Content WEB CONTENT SOCIAL MEDIA MOBILE CHALLENGES & CONTESTS CONTACT CENTERS CUSTOMER Training EXPERIENCE Communities
Data Virtualization Implementation Methodology and Best Practices
White Paper Data Virtualization Implementation Methodology and Best Practices INTRODUCTION Cisco s proven Data Virtualization Implementation Methodology and Best Practices is compiled from our successful
Embracing Semantic Technology for Better Metadata Authoring in Biomedicine
Embracing Semantic Technology for Better Metadata Authoring in Biomedicine Attila L. Egyedi, Martin J. O Connor, Marcos Martínez-Romero, Debra Willrett, Josef Hardi, John Graybeal, and Mark A. Musen Stanford
Automated Visualization Support for Linked Research Data
Automated Visualization Support for Linked Research Data Belgin Mutlu 1, Patrick Hoefler 1, Vedran Sabol 1, Gerwald Tschinkel 1, and Michael Granitzer 2 1 Know-Center, Graz, Austria 2 University of Passau,
JISC WORK PACKAGE: (Project Plan Appendix B, Version 2 )
Date: 22/10/2008 JISC WORK PACKAGE: (Project Plan Appendix B, Version 2 ) WORKPACKAGES Month 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 1: Project Management 2: Institutional Repository
CDIS Biomedical Data Commons
CDIS Biomedical Data Commons Computational Life Science Seminar Series October 18, 2017 Michael Fitzsimons Center for Data Intensive Science Agenda What is a Data Commons? Data Commons at CDIS NCI GDC
Archivists Workbench: White Paper
Archivists Workbench: White Paper Robin Chandler, Online Archive of California Bill Landis, University of California, Irvine Bradley Westbrook, University of California, San Diego 1 November 2001 Background
Building a Scalable Recommender System with Apache Spark, Apache Kafka and Elasticsearch
Nick Pentreath Nov / 14 / 16 Building a Scalable Recommender System with Apache Spark, Apache Kafka and Elasticsearch About @MLnick Principal Engineer, IBM Apache Spark PMC Focused on machine learning
SWAD-Europe Deliverable 3.18: RDF Query Standardisation
SWAD-Europe Deliverable 3.18: RDF Query Standardisation Project name: Semantic Web Advanced Development for Europe (SWAD-Europe) Project Number: IST-2001-34732 Workpackage name: 3 Dissemination and Exploitation
Software Architecture Review
Software Architecture Review Jason Hunt Chris Donley Mazin Gilbert December 11, 2017 Agenda Platform Maturity & Skills - Survey Results - Recommendations - Recommended Platform Maturity Levels Technology
Webinar Annotate data in the EUDAT CDI
Webinar Annotate data in the EUDAT CDI Yann Le Franc - e-science Data Factory, Paris, France March 16, 2017 This work is licensed under the Creative Commons CC-BY 4.0 licence. Attribution: Y. Le Franc
Europeana Core Service Platform
Europeana Core Service Platform DELIVERABLE D7.1: Strategic Development Plan, Architectural Planning Revision Final Date of submission 30 October 2015 Author(s) Marcin Werla, PSNC Pavel Kats, Europeana
EUDAT. A European Collaborative Data Infrastructure. Daan Broeder The Language Archive MPI for Psycholinguistics CLARIN, DASISH, EUDAT
EUDAT A European Collaborative Data Infrastructure Daan Broeder The Language Archive MPI for Psycholinguistics CLARIN, DASISH, EUDAT OpenAire Interoperability Workshop Braga, Feb. 8, 2013 EUDAT Key facts
DiscoverySpace: Crowdsourced Suggestions Onboard Novices in Complex Software
DiscoverySpace: Crowdsourced Suggestions Onboard Novices in Complex Software C. Ailie Fraser Scott Klemmer Abstract The Design Lab The Design Lab UC San Diego UC San Diego La Jolla, CA 92092, USA La Jolla,
Cheshire 3 Framework White Paper: Implementing Support for Digital Repositories in a Data Grid Environment
Cheshire 3 Framework White Paper: Implementing Support for Digital Repositories in a Data Grid Environment Paul Watry Univ. of Liverpool, NaCTeM pwatry@liverpool.ac.uk Ray Larson Univ. of California, Berkeley
Reproducible Workflows Biomedical Research. P Berlin, Germany
Reproducible Workflows Biomedical Research P11 2018 Berlin, Germany Contributors Leslie McIntosh Research Data Alliance, U.S., Executive Director Oya Beyan Aachen University, Germany Anthony Juehne RDA,
Certification. F. Genova (thanks to I. Dillo and Hervé L Hours)
Certification F. Genova (thanks to I. Dillo and Hervé L Hours) Perhaps the biggest challenge in sharing data is trust: how do you create a system robust enough for scientists to trust that, if they share,
Core Technology Development Team Meeting
Core Technology Development Team Meeting Agenda v Updates regarding last meeting action items v Presentation by Ergin about Ontology Services v Brief updates from others Supported by the NIH grant 1U24
A Unified Approach to Metadata Standards. Scott Hills (Chevron) & Jerry Hubbard (Energistics) 25 th February 2013 SLC - London
A Unified Approach to Metadata Standards Scott Hills (Chevron) & Jerry Hubbard (Energistics) 25 th February 2013 SLC - London Initiative Background: Business Driver & Goal State Business Driver 40% of
LOAN IQ DIAGNOSTIC TOOLS Topic of the Month FusionBanking Loan IQ
LOAN IQ DIAGNOSTIC TOOLS Topic of the Month FusionBanking Loan IQ Lorenzo Cerutti SAG Specialist Patricia Malin ESG Manager Lochlann O Donnell ESG Expert Engineer November 2017 Finastra WELCOME TO THE
Interoperability and Semantics in Use- Application of UML, XMI and MDA to Precision Medicine and Cancer Research
Interoperability and Semantics in Use- Application of UML, XMI and MDA to Precision Medicine and Cancer Research Ian Fore, D.Phil. Associate Director, Biorepository and Pathology Informatics Senior Program
The Materials Data Facility
The Materials Data Facility Ben Blaiszik (blaiszik@uchicago.edu), Kyle Chard (chard@uchicago.edu) Ian Foster (foster@uchicago.edu) materialsdatafacility.org What is MDF? We aim to make it simple for materials
The Now Platform Reference Guide
The Now Platform Reference Guide A tour of key features and functionality START Introducing the Now Platform Digitize your business with intelligent apps The Now Platform is an application Platform-as-a-Service
Institutional Repository using DSpace. Yatrik Patel Scientist D (CS)
Institutional Repository using DSpace Yatrik Patel Scientist D (CS) yatrik@inflibnet.ac.in What is Institutional Repository? Institutional repositories [are]... digital collections capturing and preserving
National Snow and Ice Data Center. Plan for Reassessing the Levels of Service for Data at the NSIDC DAAC
National Snow and Ice Data Center Plan for Reassessing the Levels of Service for Data at the NSIDC DAAC Authors: R. Weaver, R. Duerr Date 3/21/2010 CHANGE LOG Revision Date Description Author 1.0 6/29/2009
Digital The Harold B. Lee Library
Digital Preservation @ The Harold B. Lee Library CIMA 23 May 2013 How we got here? 1. Understanding Digital Preservation 2. Search for Content 3. Maintain Optical Disc Storage 4. In House Preservation
Product Development Road
Product Development Road Map Priorities - ITIL As we are building a new business, your continued support is important to us. Our immediate focus is on getting the core functions right so that we are ready
Deliverable 17.3 Test Report on MD-Paedigree Release
Model Driven Paediatric European Digital Repository Call identifier: FP7-ICT-2011-9 - Grant agreement no: 600932 Thematic Priority: ICT - ICT-2011.5.2: Virtual Physiological Human Deliverable 17.3 Test
Linking data and publications the past, present, and future. Dr. Hylke Koers, Head of Content Innovation, Elsevier
Linking data and publications the past, present, and future Dr. Hylke Koers, Head of Content Innovation, Elsevier BioCADDIE webinar January 8, 2015 Ease of access Open Access 2 The issue: data is important,
PDS 2010 System Design Report
PDS 2010 System Design Report MC Face-to-Face St. Louis, MO August 16-17, 2010 Topics Overall Progress Test Collection Ingestion Build 1 System Deliverables Component Progress - Registry, Harvest, Security
WEB REDESIGN PROJECT. presented to President s Cabinet. presented by Eric Turner, Web and Portal Services Uyen Mai, Marketing and Communication
WEB REDESIGN PROJECT presented to President s Cabinet presented by Eric Turner, Web and Portal Services Uyen Mai, Marketing and Communication October 28, 2014 Web Redesign Goals More Audience Focused More
Data Driven Performance Repository to Classify and Retrieve Storage Tuning Profiles Ismael Solis Moreno IBM
Data Driven Performance Repository to Classify and Retrieve Storage Tuning Profiles Ismael Solis Moreno IBM 2018 Storage Developer Conference. IBM Corporation. All Rights Reserved. 1 Agenda The challenge
A Scalable Architecture for Extracting, Aligning, Linking, and Visualizing Multi-Int Data
A Scalable Architecture for Extracting, Aligning, Linking, and Visualizing Multi-Int Data Craig Knoblock & Pedro Szekely University of Southern California Introduction Massive quantities of data available
Update on Dataverse Dryad-Dataverse Community Meeting. Mercè Crosas, Elizabeth Quigley & Eleni Castro. Data Science > IQSS > Harvard University
Update on Dataverse Image credit: David Bygott (CC-BY-NC-SA) 2014 Dryad-Dataverse Community Meeting Mercè Crosas, Elizabeth Quigley & Eleni Castro Data Science > IQSS > Harvard University Introduction
Introduction
Introduction EuropeanaConnect All-Staff Meeting Berlin, May 10 12, 2010 Welcome to the All-Staff Meeting! Introduction This is a quite big meeting. This is the end of successful project year Project established
Towards Reliable Interactive Data Cleaning: A User Survey and Recommendations
Towards Reliable Interactive Data Cleaning: A User Survey and Recommendations coax treasure out of messy, unstructured data Sanjay Krishnan, Daniel Haas, Eugene Wu, Michael Franklin HILDA 2016 1 2 204
Things to consider when using Semantics in your Information Management strategy. Toby Conrad Smartlogic
Things to consider when using Semantics in your Information Management strategy Toby Conrad Smartlogic toby.conrad@smartlogic.com +1 773 251 0824 Some of Smartlogic s 250+ Customers Awards Trend Setting
Data Quality Project Open Industry Meeting. Steven Wilson, BSI. What can we do to find lost customers and why do we want to do it?
Steven Wilson, BSI What can we do to find lost customers and why do we want to do it? PAS standard overview for TISA 5 th September 2013 Steven Wilson BSI Standards Solutions 020 8996 6358 steven.wilson@bsigroup.com
INSPIRE status report
INSPIRE Team INSPIRE Status report 29/10/2010 Page 1 of 7 INSPIRE status report Table of contents 1 INTRODUCTION... 1 2 INSPIRE STATUS... 2 2.1 BACKGROUND AND RATIONAL... 2 2.2 STAKEHOLDER PARTICIPATION...
Heiðrun. Building DPLA s New Metadata Ingestion System. Mark A. Matienzo Digital Public Library of America
Heiðrun Building DPLA s New Metadata Ingestion System Mark A. Matienzo Digital Public Library of America Metropolitan New York Library Council Annual Conference January 15, 2015 Outline 1.
Enterprise Data Catalog for Microsoft Azure Tutorial
Enterprise Data Catalog for Microsoft Azure Tutorial VERSION 10.2 JANUARY 2018 Page 1 of 45 Contents Tutorial Objectives... 4 Enterprise Data Catalog Overview... 5 Overview... 5 Objectives... 5 Enterprise
Initial Operating Capability & The INSPIRE Community Geoportal
INSPIRE Conference, Rotterdam, 15 19 June 2009 1 Infrastructure for Spatial Information in the European Community Initial Operating Capability & The INSPIRE Community Geoportal EC INSPIRE GEOPORTAL TEAM
An Oz Mammals Bioinformatics and Data Resource
An Oz Mammals Bioinformatics and Data Resource Vicky Schneider, Andrew Pask, Denis O Meally, Philippa Griffin, Jeff Christiansen, Mike Charleston, Dominique Gorse, Andrew Treloar, Jason Williams, Rebecca
The Data Management Plan: Putting policy into practice Suzanne Clarke Director, Information Resources
The Data Management Plan: Putting policy into practice Suzanne Clarke Director, Information Resources August 2008 Monash environment High level interest DVC (Research, Prof Edwina Cornish) E-Research Centre
Metadata Models for Experimental Science Data Management
Metadata Models for Experimental Science Data Management Brian Matthews Facilities Programme Manager Scientific Computing Department, STFC Co-Chair RDA Photon and Neutron Science Interest Group Task lead,
Globus Platform Services for Data Publication. Greg Nawrocki University of Chicago & Argonne National Lab GeoDaRRS August 7, 2018
Globus Platform Services for Data Publication Greg Nawrocki greg@globus.org University of Chicago & Argonne National Lab GeoDaRRS August 7, 2018 Outline Globus Overview Globus Data Publication v1 Lessons
DIRECTORS OF METHODOLOGY/IT DIRECTORS JOINT STEERING GROUP 18 NOVEMBER 2015
DIME/ITDG SG November 2015 DIRECTORS OF METHODOLOGY/IT DIRECTORS JOINT STEERING GROUP 18 NOVEMBER 2015 Item 03 of the agenda ESS Vision 2020: ESS.VIP VALIDATION 1. Purpose of the document ESS Vision 2020:
Interoperability in Science Data: Stories from the Trenches
Interoperability in Science Data: Stories from the Trenches Karen Stocks University of California San Diego Open Data for Open Science Data Interoperability Microsoft escience Workshop 2012 Interoperability