How to Build a Cluster
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- Nigel Davis
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1 How to Build a Cluster Intel Server Board S3000PT Recipe ID: 24PLTF
2 Contents Introduction... 3 Overview... 3 Hardware Components... 4 Software Used in the Installation... 6 Hardware Installation... 6 Server racks...6 Ethernet Switches and Cables...7 Infiniband Switches and Host Channel Adapters...7 Handling InfiniBand Cables...7 Rotating InfiniBand Connectors...7 Minimum Cable Bend Radius...8 Server Management...10 BIOS Provisioning...10 OS Provisioning and Cluster Management...11 Platform OCS
3 Introduction This Intel ESAA recipe describes the steps required to build a High Performance Computing (HPC) cluster based upon the Intel S3000PT server board; from hardware assembly through performance testing and cluster application development. It includes various options for hardware design, interconnects, management, BIOS and OS provisioning, job schedulers, cluster tools and cluster application development packages and runtime environments. Note: It is recommended that the entire document is read prior to any installation activity Overview As mentioned above, this recipe illustrates the beginning to end setup and implementation of a HPC cluster. The basic outline of the recipe is as follows: 1) Cluster hardware setup racks, power, cabling, switches, etc. 2) Server management application options for pre boot and post boot system management 3) Node BIOS provisioning a PXE environment to boot nodes to DOS for updates 4) Node OS provisioning and Cluster Management with Platform Open Cluster Stack (OCS) An OS provisioning solution for easily deploying, running and managing cluster operating environments 5) Cluster Application Development and Application Execution Environments Complete packages for running, developing and optimizing cluster applications, and testing cluster performance. Each of these sections will include either references to locations of existing documentation or detailed instructions on how to setup specific installation requirements. 3
4 Hardware Components Quantity per node Item Manufacturer Model 2 (per chassis) Intel Server Board Intel S3000PT 1 Chassis Per 2 Nodes Third Party Reference Evercase 1U Required Chassis 4GB Per Server Board Memory Any supported Please refer to the Tested Memory list 1 Per Server Board Intel Xeon Processor Intel Please refer to the Qualified and Supported Intel Processors list at 1 Per Server Board 1U passive heatsink (light weight with heat pipe) Intel AXXUPHS 1 Per Server Board SATA 3.5 hard drive Any supported Please refer to the Intel Tested Hardware and Operating System List As Needed External USB 2.0 DVD Any supported Please refer to the drive Intel Tested Hardware and Operating System List 1 Per Server Board PCI-E InfiniBand* Host Channel Adapter SilverStorm (Qlogic) HCA Optional Per Server Board InfiniBand* Host Channel Adapter Qlogic QLE Optional Per Server Board InfiniBand* Host Channel Adapter Intel AXXIBDDRPT As Needed InfiniBand cables Any supported 1 (min per cluster) InfiniBand switch Any supported 4
5 1 (min), As Needed Ethernet cables Any supported 1 (min per cluster) Ethernet switch Any supported 1 (min per cluster) Keyboard, Video, Mouse (KVM) switch Any supported 1 KVM cables Any supported Table 1 Hardware Bill of Materials Note: The AXXUPHS has been mechanically validated for use with the S3000PT board with direct chassis attach implementations 5
6 Software Used in the Installation Dist. By Description File Name Platform Computing Open Cluster Stack (OCS) Intel Intel Tools Table 2 - Software Bill of Materials Hardware Installation Server racks Depending on the size of the cluster being built, the frontend, switches and any management nodes should be centrally located if multiple racks are being installed. Cluster nodes should follow a clear and organized numbering scheme to aid in node identification. Cable, power, and cooling plans are very important and must be carefully considered. These plans drive the ultimate layout of equipment in the racks. A typical configuration involves switches and servers in the same rack. An example of a large rack layout is illustrated by figure 1 below. Note: Platform* compute node numbering begins at 0. Rack identification numbers begin at U Cluster switch central point 3 Raised Floor Figure 1. Server racks 6
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