Supporting Information

Size: px
Start display at page:

Download "Supporting Information"

Transcription

1 Supporting Information Highly stable bimetallic AuIr/TiO 2 catalyst: physical origins of the intrinsic high stability against sintering Chang Wan Han 1, Paulami Majumdar 2, Ernesto E. Marinero 1, Antonio Aguilar-Tapia 3, Rodolfo Zanella 3, Jeffrey Greeley 2, and Volkan Ortalan 1* 1. School of Materials Engineering and Birck Nanotechnology Center, Purdue University, West Lafayette, IN, USA School of Chemical Engineering, Purdue University, West Lafayette, IN, USA Centro de Ciencias Aplicadas y Desarrollo Technologico, Universidad Nacional Autonoma de Mexico, Mexico City, Mexico * Corresponding author: vortalan@purdue.edu

2 1. Methods 1.1. HRTEM and HAADF-STEM imaging for particle size measurement The high-resolution transmission electron microscopy (HRTEM) imaging and high-angle annular dark-field (HAADF) STEM imaging were performed at 300 kv using an FEI Titan microscope at the Birck Nanotechnology Center, Purdue University and FEI Titan S probe corrected microscope at Oak Ridge National Laboratory. The microscopy images acquired from the bimetallic AuIr and monometallic Au supported on TiO 2 characterize the steady state (long-term) stability of the catalyst samples. Particle size measurements for AuIr nanoparticles and Au nanoparticles were performed using the ImageJ software 1 from the collected HRTEM and HAADF-STEM images HAADF-STEM Tomography Two HAADF-STEM tilt series and one tilt-series were collected from the Au/TiO 2 and AuIr/TiO 2 using an FEI Titan microscope at the Birck Nanotechnology Center, Purdue University. Since Au nanoparticles were highly sintered, the number of Au nanoparticles found at high magnification tilt-series was too low to get a good statistic information. Therefore, we collected a low magnification tilt-series from the Au/TiO 2 having enough number of Au nanoparticles. The collected HAADF-STEM tilt series were aligned by the fiducial marker alignment implemented in the IMOD software package. 2 STEM-tomograms were reconstructed from the aligned tilt-series using TEMBIR method, 3 which provides less missing wedge artifacts and better signal to noise (SNR) ratio compared to those obtained by conventional weighted back projection (WBP) and simultaneous iterative reconstruction technique (SIRT). The reconstructed

3 tomograms were segmented by thresholding and manual inspection. Segmented tomograms were visualized by surface-rendering method and quantified by VGS Avizo software to get inter-particle nearest neighbor distance. Surface rendered tomogram of Au/TiO 2 (high mag.), Au/TiO 2 (low mag.), and AuIr/TiO 2 are shown in Figure S1, S2, and S3, respectively. Tomogram movies are also available.

4 2. Tomogram Movie Captions Movie S1. Surface rendered tomogram of Au/TiO 2 (Magnification: 320,000x, Voxel size: Å 3, Tilt series collection range: 70 to + 70 (5 increment)). Movie S2. Surface rendered tomogram of Au/TiO 2 (Magnification: 115,000x, Voxel size: Å 3, Tilt series collection range: 68 to + 70 (1 increment)) Movie S3. Surface rendered tomogram of AuIr/TiO 2 (Magnification: 320,000x, Voxel size: Å 3, 58 to 70 (2 increment))

5 3. Supplementary Figures Figure S1: Selected frames from the surface rendered tomogram movie (Movie S1) of Au/TiO 2 (High mag.).

6 Figure S2: Selected frames from the surface rendered tomogram movie (Movie S2) of Au/TiO 2 (Low mag.). For better visibility of Au nanoparticles, TiO 2 supports are transparently rendered.

7 Figure S3: Selected frames from the surface rendered tomogram movie (Movie S3) of AuIr/TiO 2.

8 References 1. Schneider, C. a, Rasband, W. S. & Eliceiri, K. W. NIH Image to ImageJ: 25 years of image analysis. Nat. Methods 9, (2012). 2. Kremer, J. R., Mastronarde, D. N. & McIntosh, J. R. Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 116, (1996). 3. Venkatakrishnan, S., Drummy, L. F., Jackson, M. A., De graef, M. & Bouman, C. A. A Model Based Iterative Reconstruction Algorithm For High Angle Annular Dark Field-Scanning Transmission Electron Microscope. IEEE Trans. Image Process. 22, (2013).

ADVANCED RECONSTRUCTION FOR ELECTRON MICROSCOPY

ADVANCED RECONSTRUCTION FOR ELECTRON MICROSCOPY 1 ADVANCED RECONSTRUCTION FOR ELECTRON MICROSCOPY SUHAS SREEHARI S. V. VENKATAKRISHNAN (VENKAT) CHARLES A. BOUMAN PURDUE UNIVERSITY AUGUST 15, 2014 2 OUTLINE 1. Overview of MBIR 2. Previous work 3. Leading

More information

Supporting information SI 0: TEM & STEM acquisition parameters, in 2D and 3D

Supporting information SI 0: TEM & STEM acquisition parameters, in 2D and 3D Electronic Supplementary Material (ESI) for Nanoscale. This journal is The Royal Society of Chemistry 2015 Supporting information SI 0: TEM & STEM acquisition parameters, in 2D and 3D Electron tomography

More information

Tomography. Introduction to Tomography TEM Tilt-Series Tomography in Life Science STEM Tomography in Materials Science

Tomography. Introduction to Tomography TEM Tilt-Series Tomography in Life Science STEM Tomography in Materials Science Tomography Introduction to Tomography TEM Tilt-Series Tomography in Life Science STEM Tomography in Materials Science Introduction to Tomography Tomography is imaging by sections or sectioning. A device

More information

3D Energy Dispersive Spectroscopy Elemental Tomography in the Scanning Transmission Electron Microscope

3D Energy Dispersive Spectroscopy Elemental Tomography in the Scanning Transmission Electron Microscope 3D Energy Dispersive Spectroscopy Elemental Tomography in the Scanning Transmission Electron Microscope Brian Van Devener Topics 1.Introduction to EDS in the STEM 2.Extending EDS into three dimensions

More information

Tomography and Subtomogram Averaging

Tomography and Subtomogram Averaging Tomography and Subtomogram Averaging John Briggs EM course 2017 What do we need to get a 3D structure? Sample preparation methods A transmission electron microscope Different views of our object of interest

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION doi:10.1038/nature10934 Supplementary Methods Mathematical implementation of the EST method. The EST method begins with padding each projection with zeros (that is, embedding

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:10.1038/nature12009 Supplementary Figure 1. Experimental tilt series of 104 projections with a tilt range of ±72.6 and equal slope increments, acquired from a Pt nanoparticle using HAADF- STEM (energy:

More information

Supporting Information: FIB-SEM Tomography Probes the Meso-Scale Pore Space of an Individual Catalytic Cracking Particle

Supporting Information: FIB-SEM Tomography Probes the Meso-Scale Pore Space of an Individual Catalytic Cracking Particle Supporting Information: FIB-SEM Tomography Probes the Meso-Scale Pore Space of an Individual Catalytic Cracking Particle D.A.Matthijs de Winter, Florian Meirer, Bert M. Weckhuysen*, Inorganic Chemistry

More information

STEM electron tomography in the Scanning Electron Microscope

STEM electron tomography in the Scanning Electron Microscope Journal of Physics: Conference Series PAPER OPEN ACCESS STEM electron tomography in the Scanning Electron Microscope To cite this article: M Ferroni et al 2015 J. Phys.: Conf. Ser. 644 012012 Recent citations

More information

The same X-ray transparent in situ pouch cell design and sample holder plates were used for both 2D

The same X-ray transparent in situ pouch cell design and sample holder plates were used for both 2D Electronic Supplementary Material (ESI) for Energy & Environmental Science. This journal is The Royal Society of Chemistry 2014 Supplementary Information Experimental Materials and Electrochemistry The

More information

Advanced method for the accurate measurement of tilt angle in a transmission electron microscopy goniometer

Advanced method for the accurate measurement of tilt angle in a transmission electron microscopy goniometer Lee et al. Journal of Analytical Science and Technology (2018) 9:6 DOI 10.1186/s40543-018-0140-6 Journal of Analytical Science and Technology TECHNICAL NOTE Open Access Advanced method for the accurate

More information

Ultramicroscopy 113 (2012) Contents lists available at SciVerse ScienceDirect. Ultramicroscopy

Ultramicroscopy 113 (2012) Contents lists available at SciVerse ScienceDirect. Ultramicroscopy Ultramicroscopy 113 (2012) 120 130 Contents lists available at SciVerse ScienceDirect Ultramicroscopy journal homepage: www.elsevier.com/locate/ultramic Electron tomography based on a total variation minimization

More information

Supplementary Materials

Supplementary Materials Supplementary Materials Microtubule doublets isolated from sea urchin sperm were studied by cryoelectron tomography, producing a density map in which we can identify a number of nontubulin components,

More information

FASART: An iterative reconstruction algorithm with inter-iteration adaptive NAD filter

FASART: An iterative reconstruction algorithm with inter-iteration adaptive NAD filter Bio-Medical Materials and Engineering 26 (2015) S1409 S1415 DOI 10.3233/BME-151439 IOS Press S1409 FASART: An iterative reconstruction algorithm with inter-iteration adaptive NAD filter Ziying Zhou a,

More information

Alignment and Other Challenges in Reconstructing Cryotomograms with IMOD

Alignment and Other Challenges in Reconstructing Cryotomograms with IMOD Alignment and Other Challenges in Reconstructing Cryotomograms with IMOD Challenges in Cryotomography Alignment, alignment, alignment It can be hard to get fiducials onto/in the sample The low SNR makes

More information

Quantitative Structure Determination of Large Three-Dimensional Nanoparticle Assemblies

Quantitative Structure Determination of Large Three-Dimensional Nanoparticle Assemblies Quantitative Structure Determination of Large Three-Dimensional Nanoparticle Assemblies Thomas Altantzis, Bart Goris, Ana Sánchez-Iglesias, Marek Grzelczak, Luis M. Liz-Marzán, and Sara Bals * Self-assembly

More information

Three-dimensional structure and flexibility of a membrane-coating module of the nuclear pore complex

Three-dimensional structure and flexibility of a membrane-coating module of the nuclear pore complex CORRECTION NOTICE Nat. Struct. Mol. Biol. advance online publication, doi:10.1038/nsmb.1618 (7 June 2009) Three-dimensional structure and flexibility of a membrane-coating module of the nuclear pore complex

More information

A NEW APPROACH FOR 3D SEGMENTATION OF CELLULAR TOMOGRAMS OBTAINED USING THREE-DIMENSIONAL ELECTRON MICROSCOPY

A NEW APPROACH FOR 3D SEGMENTATION OF CELLULAR TOMOGRAMS OBTAINED USING THREE-DIMENSIONAL ELECTRON MICROSCOPY A NEW APPROACH FOR 3D SEGMENTATION OF CELLULAR TOMOGRAMS OBTAINED USING THREE-DIMENSIONAL ELECTRON MICROSCOPY A. Bartesaghi and G. Sapiro University of Minnesota Electrical and Computer Engineering Department

More information

Batch Processing of Tomograms with IMOD

Batch Processing of Tomograms with IMOD Batch Processing of Tomograms with IMOD Batch Processing Can Be Useful for a Wide Range of Tilt Series Routine plastic section tilt series can be fully reconstructed automatically with 80-95% success rate

More information

EMBO Practical Course on Image Processing for Cryo EM 1-11 September 2015

EMBO Practical Course on Image Processing for Cryo EM 1-11 September 2015 EMBO Practical Course on Image Processing for Cryo EM 1-11 September 2015 Practical 4: Optional part for experienced IMOD users - Reconstructing a cryo tomogram and sub-tomogram averaging of GroEL IMOD

More information

Digital Laminography and Computed Tomography with 600 kv for Aerospace Applications

Digital Laminography and Computed Tomography with 600 kv for Aerospace Applications 4th International Symposium on NDT in Aerospace 2012 - Tu.3.A.1 Digital Laminography and Computed Tomography with 600 kv for Aerospace Applications Malte KURFISS 1, Gerd STRECKENBACH 2 1 YXLON International

More information

MATERIALS CHARACTERIZATION FACILITY

MATERIALS CHARACTERIZATION FACILITY MATERIALS CHARACTERIZATION FACILITY LOOK DEEPER AT THE GEORGIA TECH MATERIALS CHARACTERIZATION FACILITY Shared Imaging Facilities & Analytical Services Available to academic, industry, and government users,

More information

arxiv: v2 [cs.cv] 15 Oct 2018

arxiv: v2 [cs.cv] 15 Oct 2018 CRYO-CARE: CONTENT-AWARE IMAGE RESTORATION FOR CRYO-TRANSMISSION ELECTRON MICROSCOPY DATA Tim-Oliver Buchholz 1,2, Mareike Jordan 2, Gaia Pigino 2, Florian Jug 1,2 1 Center for Systems Biology Dresden

More information

Denoising Cryotomograms with IMOD

Denoising Cryotomograms with IMOD Denoising Cryotomograms with IMOD Reasons to Denoise Cryotomograms Easier segmentation of features Presentation Particle picking for subvolume averaging The high-resolution information that you hope to

More information

Introduction to Cryo Electron Microscopy/Tomography

Introduction to Cryo Electron Microscopy/Tomography Introduction to Cryo Electron Microscopy/Tomography Ricardo Miguel Sánchez Loayza Max Planck Institute for Biophysics - Kudryashev Group Goethe Universität - Visual Sensorics and Information Processing

More information

The ASTRA Toolbox: a platform for advanced algorithm development in electron tomography

The ASTRA Toolbox: a platform for advanced algorithm development in electron tomography The ASTRA Toolbox: a platform for advanced algorithm development in electron tomography Wim van Aarle a,1, Willem Jan Palenstijn a,b,1, Jan De Beenhouwer a, Thomas Altantzis c, Sara Bals c, K. Joost Batenburg

More information

Single-particle electron microscopy (cryo-electron microscopy) CS/CME/BioE/Biophys/BMI 279 Nov. 16 and 28, 2017 Ron Dror

Single-particle electron microscopy (cryo-electron microscopy) CS/CME/BioE/Biophys/BMI 279 Nov. 16 and 28, 2017 Ron Dror Single-particle electron microscopy (cryo-electron microscopy) CS/CME/BioE/Biophys/BMI 279 Nov. 16 and 28, 2017 Ron Dror 1 Last month s Nobel Prize in Chemistry Awarded to Jacques Dubochet, Joachim Frank

More information

Principles and General Aspects of Electron Tomography

Principles and General Aspects of Electron Tomography June 26 (Mon) 8:00 Registration/Security Visitorʹs Center 9:00 Welcome Principles and General Aspects of Electron Tomography David 10:00 Coffee Break 11:00 Alignment and Other Challenges in Reconstructing

More information

19. TOMOGRAPHY USING THE TRANSMISSION ELECTRON MICROSCOPE

19. TOMOGRAPHY USING THE TRANSMISSION ELECTRON MICROSCOPE 19. TOMOGRAPHY USING THE TRANSMISSION ELECTRON MICROSCOPE P. A. MIDGLEY 1. INTRODUCTION The promise of nanotechnology [1] can only be fully realised if characterisation techniques are available to study

More information

The Electron Microscopy Data Bank and OME

The Electron Microscopy Data Bank and OME The Electron Microscopy Data Bank and OME Rich data, quality assessment, and cloud computing Christoph Best European Bioinformatics Institute, Cambridge, UK Transmossion Electron Microscope ADVANTAGES

More information

A Model Based Iterative Reconstruction Algorithm For High Angle Annular Dark Field - Scanning Transmission Electron Microscope (HAADF-STEM) Tomography

A Model Based Iterative Reconstruction Algorithm For High Angle Annular Dark Field - Scanning Transmission Electron Microscope (HAADF-STEM) Tomography SUBMITTED TO IEEE TRANSACTIONS ON IMAGE PROCESSING A Model Based Iterative Reconstruction Algorithm For High Angle Annular Dark Field - Scanning Transmission Electron Microscope (HAADF-STEM) Tomography

More information

Image Alignment and Application of 2D Fast Rotational Matching in Single Particle cryo-electron Microscopy. Yao Cong. Baylor College of Medicine

Image Alignment and Application of 2D Fast Rotational Matching in Single Particle cryo-electron Microscopy. Yao Cong. Baylor College of Medicine Image Alignment and Application of 2D Fast Rotational Matching in Single Particle cryo-electron Microscopy Yao Cong Baylor College of Medicine cryo-em & single particle analysis Single-particle electron

More information

A Projection Access Scheme for Iterative Reconstruction Based on the Golden Section

A Projection Access Scheme for Iterative Reconstruction Based on the Golden Section A Projection Access Scheme for Iterative Reconstruction Based on the Golden Section Thomas Köhler Philips Research Laboratories Roentgenstrasse - Hamburg Germany Abstract A new access scheme for projections

More information

INTRODUCTION TO MEDICAL IMAGING- 3D LOCALIZATION LAB MANUAL 1. Modifications for P551 Fall 2013 Medical Physics Laboratory

INTRODUCTION TO MEDICAL IMAGING- 3D LOCALIZATION LAB MANUAL 1. Modifications for P551 Fall 2013 Medical Physics Laboratory INTRODUCTION TO MEDICAL IMAGING- 3D LOCALIZATION LAB MANUAL 1 Modifications for P551 Fall 2013 Medical Physics Laboratory Introduction Following the introductory lab 0, this lab exercise the student through

More information

3D X-ray Microscopy Characterization. Metal Additively Manufactured Parts. Application Note

3D X-ray Microscopy Characterization. Metal Additively Manufactured Parts. Application Note 3D X-ray Microscopy Characterization Metal Additively Manufactured Parts Application Note 3D X-ray Microscopy Characterization Metal Additively Manufactured Parts Author: Luke Hunter ZEISS X-ray Microscopy

More information

Compressed Sensing for Electron Tomography

Compressed Sensing for Electron Tomography University of Maryland, College Park Department of Mathematics February 10, 2015 1/33 Outline I Introduction 1 Introduction 2 3 4 2/33 1 Introduction 2 3 4 3/33 Tomography Introduction Tomography - Producing

More information

Supporting Information. Super Resolution Imaging of Nanoparticles Cellular Uptake and Trafficking

Supporting Information. Super Resolution Imaging of Nanoparticles Cellular Uptake and Trafficking Supporting Information Super Resolution Imaging of Nanoparticles Cellular Uptake and Trafficking Daan van der Zwaag 1,2, Nane Vanparijs 3, Sjors Wijnands 1,4, Riet De Rycke 5, Bruno G. De Geest 2* and

More information

Quality control phantoms and protocol for a tomography system

Quality control phantoms and protocol for a tomography system Quality control phantoms and protocol for a tomography system Lucía Franco 1 1 CT AIMEN, C/Relva 27A O Porriño Pontevedra, Spain, lfranco@aimen.es Abstract Tomography systems for non-destructive testing

More information

Axial block coordinate descent (ABCD) algorithm for X-ray CT image reconstruction

Axial block coordinate descent (ABCD) algorithm for X-ray CT image reconstruction Axial block coordinate descent (ABCD) algorithm for X-ray CT image reconstruction Jeffrey A. Fessler and Donghwan Kim EECS Department University of Michigan Fully 3D Image Reconstruction Conference July

More information

ARIA Software. Total Focusing Method. - Real-Time TFM Imaging - Acquire all FMC data - FMC/TFM Wizard - TFM Viewer - Analysis Mode

ARIA Software. Total Focusing Method. - Real-Time TFM Imaging - Acquire all FMC data - FMC/TFM Wizard - TFM Viewer - Analysis Mode ARIA Software Total Focusing Method - Real-Time TFM Imaging - Acquire all FMC data - FMC/TFM Wizard - TFM Viewer - Analysis Mode Several Implementations Standard TFM Migration TFM Advanced TFM TFMp Adaptive

More information

A consumer level 3D object scanning device using Kinect for web-based C2C business

A consumer level 3D object scanning device using Kinect for web-based C2C business A consumer level 3D object scanning device using Kinect for web-based C2C business Geoffrey Poon, Yu Yin Yeung and Wai-Man Pang Caritas Institute of Higher Education Introduction Internet shopping is popular

More information

HIGH RESOLUTION COMPUTED TOMOGRAPHY FOR METROLOGY

HIGH RESOLUTION COMPUTED TOMOGRAPHY FOR METROLOGY HIGH RESOLUTION COMPUTED TOMOGRAPHY FOR METROLOGY David K. Lehmann 1, Kathleen Brockdorf 1 and Dirk Neuber 2 1 phoenix x-ray Systems + Services Inc. St. Petersburg, FL, USA 2 phoenix x-ray Systems + Services

More information

Colin Paul Updated 14 November Preparation of publication-quality videos using ImageJ

Colin Paul Updated 14 November Preparation of publication-quality videos using ImageJ Preparation of publication-quality videos using ImageJ Statements made in scientific papers are often much easier to understand if they are supplemented by representative videos. In the best case, these

More information

Advanced materials research using the Real-Time 3D Analytical FIB-SEM 'NX9000'

Advanced materials research using the Real-Time 3D Analytical FIB-SEM 'NX9000' SCIENTIFIC INSTRUMENT NEWS 2017 Vol. 9 SEPTEMBER Technical magazine of Electron Microscope and Analytical Instruments. Technical Explanation Advanced materials research using the Real-Time 3D Analytical

More information

Transmission Electron Tomography 3D Reconstruction of Directed Self-Assembly Di-Block Copolymers

Transmission Electron Tomography 3D Reconstruction of Directed Self-Assembly Di-Block Copolymers Transmission Electron Tomography 3D Reconstruction of Directed Self-Assembly Di-Block Copolymers Abstract The Directed Self-Assembly (DSA) technique using di-block copolymers is an emerging technology

More information

Identifying microcracks in multi-phase crystalline rocks by X-ray CT

Identifying microcracks in multi-phase crystalline rocks by X-ray CT Identifying microcracks in multi-phase crystalline rocks by X-ray CT Julia Behnsen 1, Oshaine O. Blake 2, Robert J. Cernik 1, Philip J. Withers 1 1 Henry Moseley X-ray Imaging Facility, Materials Science

More information

Advances in Disk Metrology

Advances in Disk Metrology Advances in Disk Metrology Robert Kertayasa Zeta Instruments March 2011 www.zeta-inst.com 1909 Concourse Drive San Jose CA 95131 PHONE (408) 577-1888 FAX (408) 577-0588 Agenda Introduction Technology Sample

More information

Transmission Electron Microscopy 3D Construction by IPET Method TCBG GPU Workshop

Transmission Electron Microscopy 3D Construction by IPET Method TCBG GPU Workshop Transmission Electron Microscopy 3D Construction by IPET Method TCBG GPU Workshop Xing Zhang 8/4/2013 Molecular Foundry Lawrence Berkeley National Laboratory Department of Applied Physics Xi an Jiaotong

More information

Lecture 8. Conical tilt reconstruction

Lecture 8. Conical tilt reconstruction Lecture 8 Conical tilt reconstruction Central section theorem Euler angles Conical tilt series Missing cone artefact Early D studies and negative staining problems Perspectives and new trends Tilt series

More information

3D Reconstruction in EM

3D Reconstruction in EM 3D Reconstruction in EM C.O.S. Sorzano Biocomputing Unit, CNB-CSIC Instruct Image Processing Center Contents Initial volume Angular assignment 3D Reconstruction 3D Classification Resolution Amplitude correction

More information

Digital Volume Correlation for Materials Characterization

Digital Volume Correlation for Materials Characterization 19 th World Conference on Non-Destructive Testing 2016 Digital Volume Correlation for Materials Characterization Enrico QUINTANA, Phillip REU, Edward JIMENEZ, Kyle THOMPSON, Sharlotte KRAMER Sandia National

More information

Jane Geisler-Lee, Xian Liu, Wei Rang, Jayanthan Raveendiran, Marisa Blake Szubryt, David John Gibson, Matt Geisler and Qiang Cheng

Jane Geisler-Lee, Xian Liu, Wei Rang, Jayanthan Raveendiran, Marisa Blake Szubryt, David John Gibson, Matt Geisler and Qiang Cheng Supporting Materials: Image-Based Analysis to Dissect Vertical Distribution and Horizontal Asymmetry of Conspecific Root System Interactions in Response to Planting Densities, Nutrients and Root Exudates

More information

Non-Destructive Failure Analysis and Measurement for Molded Devices and Complex Assemblies with X-ray CT and 3D Image Processing Techniques

Non-Destructive Failure Analysis and Measurement for Molded Devices and Complex Assemblies with X-ray CT and 3D Image Processing Techniques SINCE2013 Singapore International NDT Conference & Exhibition 2013, 19-20 July 2013 Non-Destructive Failure Analysis and Measurement for Molded Devices and Complex Assemblies with X-ray CT and 3D Image

More information

SYSTEM LINEARITY LAB MANUAL: 2 Modifications for P551 Fall 2013 Medical Physics Laboratory

SYSTEM LINEARITY LAB MANUAL: 2 Modifications for P551 Fall 2013 Medical Physics Laboratory SYSTEM LINEARITY LAB MANUAL: 2 Modifications for P551 Fall 2013 Medical Physics Laboratory Introduction In this lab exercise, you will investigate the linearity of the DeskCAT scanner by making measurements

More information

Limited View Angle Iterative CT Reconstruction

Limited View Angle Iterative CT Reconstruction Limited View Angle Iterative CT Reconstruction Sherman J. Kisner 1, Eri Haneda 1, Charles A. Bouman 1, Sondre Skatter 2, Mikhail Kourinny 2, Simon Bedford 3 1 Purdue University, West Lafayette, IN, USA

More information

THREE-DIMENSIONA L ELECTRON MICROSCOP Y OF MACROMOLECULAR ASSEMBLIE S. Visualization of Biological Molecules in Their Native Stat e.

THREE-DIMENSIONA L ELECTRON MICROSCOP Y OF MACROMOLECULAR ASSEMBLIE S. Visualization of Biological Molecules in Their Native Stat e. THREE-DIMENSIONA L ELECTRON MICROSCOP Y OF MACROMOLECULAR ASSEMBLIE S Visualization of Biological Molecules in Their Native Stat e Joachim Frank CHAPTER 1 Introduction 1 1 The Electron Microscope and

More information

3D imaging of gap plasmons in vertically coupled nanoparticles by EELS tomography

3D imaging of gap plasmons in vertically coupled nanoparticles by EELS tomography Supporting Information 3D imaging of gap plasmons in vertically coupled nanoparticles by EELS tomography Georg Haberfehlner 1,2,*, Franz-Philipp Schmidt 2,3, Gernot Schaffernak 3, Anton Hörl 3, Andreas

More information

II: Single particle cryoem - an averaging technique

II: Single particle cryoem - an averaging technique II: Single particle cryoem - an averaging technique Radiation damage limits the total electron dose that can be used to image biological sample. Thus, images of frozen hydrated macromolecules are very

More information

Effect of OTF attenuation on single-slice SR-SIM reconstruction

Effect of OTF attenuation on single-slice SR-SIM reconstruction Effect of OTF attenuation on single-slice SR-SIM reconstruction Supplementary Figure 1: Actin filaments in U2OS cells, labelled with Phalloidin-Atto488, measured on a DeltaVision OMX, excited at 488 nm

More information

Reconstruction of atomic force microscopy image by using nanofabricated tip characterizer toward the actual sample surface topography

Reconstruction of atomic force microscopy image by using nanofabricated tip characterizer toward the actual sample surface topography Supplemental Material Reconstruction of atomic force microscopy image by using nanofabricated tip characterizer toward the actual sample surface topography Mingsheng Xu 1,*, Daisuke Fujita 2,3,*, and Keiko

More information

Supporting Information. High-Throughput, Algorithmic Determination of Nanoparticle Structure From Electron Microscopy Images

Supporting Information. High-Throughput, Algorithmic Determination of Nanoparticle Structure From Electron Microscopy Images Supporting Information High-Throughput, Algorithmic Determination of Nanoparticle Structure From Electron Microscopy Images Christine R. Laramy, 1, Keith A. Brown, 2, Matthew N. O Brien, 2 and Chad. A.

More information

Initial Model Generation

Initial Model Generation Initial Model Generation Workshop on Advanced Topics in EM Structure Determination The Scripps Research Institute La Jolla, November 2007 The issue: Structures of the IP3 receptor as determined by single

More information

Outdoor Scene Reconstruction from Multiple Image Sequences Captured by a Hand-held Video Camera

Outdoor Scene Reconstruction from Multiple Image Sequences Captured by a Hand-held Video Camera Outdoor Scene Reconstruction from Multiple Image Sequences Captured by a Hand-held Video Camera Tomokazu Sato, Masayuki Kanbara and Naokazu Yokoya Graduate School of Information Science, Nara Institute

More information

v4.3 Author of this manual: A. J. D Alfonso, B. D. Forbes, L. J. Allen

v4.3 Author of this manual: A. J. D Alfonso, B. D. Forbes, L. J. Allen µstem v4.3 A transmission electron microscopy simulation suite, in particular for scanning transmission electron microscopy. Author of this manual: A. J. D Alfonso, B. D. Forbes, L. J. Allen Adrian D Alfonso,

More information

Advanced Image Reconstruction Methods for Photoacoustic Tomography

Advanced Image Reconstruction Methods for Photoacoustic Tomography Advanced Image Reconstruction Methods for Photoacoustic Tomography Mark A. Anastasio, Kun Wang, and Robert Schoonover Department of Biomedical Engineering Washington University in St. Louis 1 Outline Photoacoustic/thermoacoustic

More information

Lecture: P1_Wk3_L5 Contact Mode Scans. Ron Reifenberger Birck Nanotechnology Center Purdue University 2012

Lecture: P1_Wk3_L5 Contact Mode Scans. Ron Reifenberger Birck Nanotechnology Center Purdue University 2012 Lecture: Contact Mode Scans Ron Reifenberger Birck Nanotechnology Center Purdue University 2012 1 The Purpose of a Microscope is to Obtain an Image Reflected laser spot Laser Diode Four-Quadrant Photodetector

More information

Supporting Information for Critical Factors of the 3D Microstructural Formation. in Hybrid Conductive Adhesive Materials by X-ray Nano-tomography

Supporting Information for Critical Factors of the 3D Microstructural Formation. in Hybrid Conductive Adhesive Materials by X-ray Nano-tomography Electronic Supplementary Material (ESI) for Nanoscale. This journal is The Royal Society of Chemistry 2014 Supporting Information for Critical Factors of the 3D Microstructural Formation in Hybrid Conductive

More information

Single-particle electron microscopy (cryo-electron microscopy) CS/CME/BioE/Biophys/BMI 279 Nov. 16 and 28, 2017 Ron Dror

Single-particle electron microscopy (cryo-electron microscopy) CS/CME/BioE/Biophys/BMI 279 Nov. 16 and 28, 2017 Ron Dror Single-particle electron microscopy (cryo-electron microscopy) CS/CME/BioE/Biophys/BMI 279 Nov. 16 and 28, 2017 Ron Dror 1 Last month s Nobel Prize in Chemistry Awarded to Jacques Dubochet, Joachim Frank

More information

Structural Information obtained

Structural Information obtained Structural Information obtained from Electron Microscopy Christiane Schaffitzel, 09.05.2013 Including slides from John Briggs, Bettina Boettcher, Nicolas Boisset, Andy Hoenger, Michael Schatz, and more

More information

University of Minnesota Nano Fabrication Center Standard Operating Procedure

University of Minnesota Nano Fabrication Center Standard Operating Procedure Equipment Name: University of Minnesota Nano Fabrication Center Coral Name: hs-scope Revision Number: 1.5 Model: HS200A Revisionist: M. Fisher Location: Bay 1 Date: 9/12/2013 1 Description The Hyphenated

More information

Artifact Reduction Based on Sinogram Interpolation for the 3D Reconstruction of Nanoparticles Using

Artifact Reduction Based on Sinogram Interpolation for the 3D Reconstruction of Nanoparticles Using FULL PAPER Electron Tomography Artifact Reduction Based on Sinogram Interpolation for the 3D Reconstruction of Nanoparticles Using Electron Tomography Kadir Sentosun, Ivan Lobato, Eva Bladt, Yang Zhang,

More information

Enhanced material contrast by dual-energy microct imaging

Enhanced material contrast by dual-energy microct imaging Enhanced material contrast by dual-energy microct imaging Method note Page 1 of 12 2 Method note: Dual-energy microct analysis 1. Introduction 1.1. The basis for dual energy imaging Micro-computed tomography

More information

Computed Tomography & 3D Metrology Application of the VDI/VDE Directive 2630 and Optimization of the CT system

Computed Tomography & 3D Metrology Application of the VDI/VDE Directive 2630 and Optimization of the CT system Computed Tomography & 3D Metrology Application of the VDI/VDE Directive 2630 and Optimization of the CT system ECNDT 2014 Prague October 6-10, 2014 Dr. Eberhard Neuser Dr. Alexander Suppes Imagination

More information

Product Information Version 1.1. ZEISS Xradia 510 Versa Submicron X-ray Imaging: Maintain High Resolution Even at Large Working Distances

Product Information Version 1.1. ZEISS Xradia 510 Versa Submicron X-ray Imaging: Maintain High Resolution Even at Large Working Distances Product Information Version 1.1 ZEISS Xradia 510 Versa Submicron X-ray Imaging: Maintain High Resolution Even at Large Working Distances Breakthrough Flexibility for 3D Submicron Imaging Achieve new levels

More information

S93-8 Page 1 TOMOGRAPHIC APPROACHES TO NONWOVENS STRUCTURE DEFINITION

S93-8 Page 1 TOMOGRAPHIC APPROACHES TO NONWOVENS STRUCTURE DEFINITION S93-8 Page 1 TOMOGRAPHIC APPROACHES TO NONWOVENS STRUCTURE DEFINITION PIs: T. Gilmore, H. Davis, Z. Mi, North Carolina State University Code: S93-8 Date of Report: 9/94 RELEVANCE TO NTC MISSION AND GOALS:

More information

Digital Image Processing

Digital Image Processing Digital Image Processing SPECIAL TOPICS CT IMAGES Hamid R. Rabiee Fall 2015 What is an image? 2 Are images only about visual concepts? We ve already seen that there are other kinds of image. In this lecture

More information

Development and application of MIPAR : a novel software package for two- and three-dimensional microstructural characterization

Development and application of MIPAR : a novel software package for two- and three-dimensional microstructural characterization Sosa et al. Integrating Materials and Manufacturing Innovation 2014, 3:10 RESEARCH Open Access Development and application of MIPAR : a novel software package for two- and three-dimensional microstructural

More information

Developments in Dimensional Metrology in X-ray Computed Tomography at NPL

Developments in Dimensional Metrology in X-ray Computed Tomography at NPL Developments in Dimensional Metrology in X-ray Computed Tomography at NPL Wenjuan Sun and Stephen Brown 10 th May 2016 1 Possible factors influencing XCT measurements Components Influencing variables Possible

More information

45 µm polystyrene bead embedded in scattering tissue phantom. (a,b) raw images under oblique

45 µm polystyrene bead embedded in scattering tissue phantom. (a,b) raw images under oblique Phase gradient microscopy in thick tissue with oblique back-illumination Tim N Ford, Kengyeh K Chu & Jerome Mertz Supplementary Figure 1: Comparison of added versus subtracted raw OBM images 45 µm polystyrene

More information

LABORATORY SYSTEM FOR X-RAY NANOTOMOGRAPHY

LABORATORY SYSTEM FOR X-RAY NANOTOMOGRAPHY 79 LABORATORY SYSTEM FOR X-RAY NANOTOMOGRAPHY Alexander Sasov, SkyScan, Vluchtenburgstraat 3, Aartselaar B2630, Belgium, www.skyscan.be. ABSTRACT Using advanced X-ray technologies and X-ray scattering

More information

Identification of Shielding Material Configurations Using NMIS Imaging

Identification of Shielding Material Configurations Using NMIS Imaging Identification of Shielding Material Configurations Using NMIS Imaging B. R. Grogan, J. T. Mihalczo, S. M. McConchie, and J. A. Mullens Oak Ridge National Laboratory, P.O. Box 2008, MS-6010, Oak Ridge,

More information

Comparison of fiber orientation analysis methods in Avizo

Comparison of fiber orientation analysis methods in Avizo Comparison of fiber orientation analysis methods in Avizo More info about this article: http://www.ndt.net/?id=20865 Abstract Rémi Blanc 1, Peter Westenberger 2 1 FEI, 3 Impasse Rudolf Diesel, Bât A, 33708

More information

III: Single particle cryoem - practical approaches

III: Single particle cryoem - practical approaches III: Single particle cryoem - practical approaches Single particle EM analysis can be performed at both 2D and 3D. Single particle EM (both negative stain and cryo) is to extract structural information

More information

Characterization of Single Pixel Evaluation PIV for Precise Flow Measurement

Characterization of Single Pixel Evaluation PIV for Precise Flow Measurement Characterization of Single Pixel Evaluation PIV for Precise Flow Measurement Han-Sheng Chuang 1, Steve T. Wereley 1, Lichuan Gui 2 1: School of Mechanical Engineering, Purdue University, West Lafayette,

More information

Automated Data Collection for Electron Microscopic Tomography

Automated Data Collection for Electron Microscopic Tomography CHAPTER TWELVE Automated Data Collection for Electron Microscopic Tomography Shawn Q. Zheng,* J. W. Sedat, and D. A. Agard* Contents 1. Introduction 284 2. Predictive EMT Data Collection 287 2.1. Geometric

More information

Segmentation tools and workflows in PerGeos

Segmentation tools and workflows in PerGeos Segmentation tools and workflows in PerGeos 1. Introduction Segmentation typically consists of a complex workflow involving multiple algorithms at multiple steps. Smart denoising and morphological filters

More information

Using X-Ray Micro Tomography to assess the quality of Packaging Foil

Using X-Ray Micro Tomography to assess the quality of Packaging Foil Using X-Ray Micro Tomography to assess the quality of Packaging Foil Martin Koster 1, Gerard van Dalen 2, Robert Hoeve 3 1 Unilever Research 2 Unilever Research 3 Unilever Research, Olivier van Noortlaaan

More information

Application Note #554 VXI Universal Surface Measurements for 3D Optical Microscopes

Application Note #554 VXI Universal Surface Measurements for 3D Optical Microscopes Surface detail of smooth AMOLED substrate Detail of LED wafer and interactive cursors Application Note #554 VXI Universal Surface Measurements for 3D Optical Microscopes MEMS inertial sensor Bruker has

More information

Supplementary Information for. HybTrack: A hybrid single particle tracking software using manual and automatic detection of dim signals

Supplementary Information for. HybTrack: A hybrid single particle tracking software using manual and automatic detection of dim signals Supplementary Information for HybTrack: A hybrid single particle tracking software using manual and automatic detection of dim signals Byung Hun Lee 1 and Hye Yoon Park 1,2 * Affiliations: 1 Department

More information

ICON User Guide

ICON User Guide ICON 1.7.2 User Guide (Copyright: Fei Sun s lab in Institute of Biophysics & Fa Zhang s lab in Institute of Computation Technology, Chinese Academy of Sciences) 1. Installation Go into the installation

More information

Limitations of Projection Radiography. Stereoscopic Breast Imaging. Limitations of Projection Radiography. 3-D Breast Imaging Methods

Limitations of Projection Radiography. Stereoscopic Breast Imaging. Limitations of Projection Radiography. 3-D Breast Imaging Methods Stereoscopic Breast Imaging Andrew D. A. Maidment, Ph.D. Chief, Physics Section Department of Radiology University of Pennsylvania Limitations of Projection Radiography Mammography is a projection imaging

More information

*Corresponding author:

*Corresponding author: Comparison of X-ray computed tomography and immersion ultrasonic nondestructive testing techniques in the case of qualitative and quantitative assessment of brazing quality level More info about this article:

More information

18th World Conference on Nondestructive Testing, April 2012, Durban, South Africa

18th World Conference on Nondestructive Testing, April 2012, Durban, South Africa 18th World Conference on Nondestructive Testing, 16-20 April 2012, Durban, South Africa TOWARDS ESTABLISHMENT OF STANDARDIZED PRACTICE FOR ASSESSMENT OF SPATIAL RESOLUTION AND CONTRAST OF INTERNATIONAL

More information

Single Particle Reconstruction Techniques

Single Particle Reconstruction Techniques T H E U N I V E R S I T Y of T E X A S S C H O O L O F H E A L T H I N F O R M A T I O N S C I E N C E S A T H O U S T O N Single Particle Reconstruction Techniques For students of HI 6001-125 Computational

More information

IMPROVEMENT OF CONSPICUITY BY FUSION OF PULSE-ECHO DATA

IMPROVEMENT OF CONSPICUITY BY FUSION OF PULSE-ECHO DATA IMPROVEMENT OF CONSPICUITY BY FUSION OF PULSE-ECHO DATA S. M. Song 1, H. Jang 1, J. Kwon 1, J. Sung 2, H. Ahn 2, J. Lee 2 and S. Jang 2 1 Seoul National Universit Seoul, Korea; 2 Sae-An Engineering Corporation,

More information

Quantitative Analysis of 3D Refractive Index Maps. Nanolive SA Chemin de la Dent d Oche 1a 1024 Ecublens Switzerland. Application Note by Nanolive SA

Quantitative Analysis of 3D Refractive Index Maps. Nanolive SA Chemin de la Dent d Oche 1a 1024 Ecublens Switzerland. Application Note by Nanolive SA Quantitative Analysis of 3D Refractive Index Maps Nanolive SA Chemin de la Dent d Oche 1a 1024 Ecublens Switzerland Application Note by Nanolive SA Abstract Nanolive s 3D Cell Explorer allows for the creation

More information

Optimal threshold selection for tomogram segmentation by reprojection of the reconstructed image

Optimal threshold selection for tomogram segmentation by reprojection of the reconstructed image Optimal threshold selection for tomogram segmentation by reprojection of the reconstructed image K.J. Batenburg 1 and J. Sijbers 1 University of Antwerp, Vision Lab, Universiteitsplein 1, B-2610 Wilrijk,

More information

P recise Eye. High resolution, diffraction-limited f/4.5 optical quality for high precision measurement and inspection.

P recise Eye. High resolution, diffraction-limited f/4.5 optical quality for high precision measurement and inspection. High resolution, diffraction-limited f/4.5 optical quality for high precision measurement and inspection. Long working distance makes lighting and handling easier. Compact size. Coaxial lighting available

More information

Enabling Technologies for Robot Assisted Ultrasound Tomography

Enabling Technologies for Robot Assisted Ultrasound Tomography Enabling Technologies for Robot Assisted Ultrasound Tomography Seminar Presentation By: Fereshteh Aalamifar Team Members: Rishabh Khurana, Fereshteh Aalamifar Mentors: Emad Boctor, Iulian Iordachita, Russell

More information

Ultrasonic Multi-Skip Tomography for Pipe Inspection

Ultrasonic Multi-Skip Tomography for Pipe Inspection 18 th World Conference on Non destructive Testing, 16-2 April 212, Durban, South Africa Ultrasonic Multi-Skip Tomography for Pipe Inspection Arno VOLKER 1, Rik VOS 1 Alan HUNTER 1 1 TNO, Stieltjesweg 1,

More information