A robust, low cost, GIS enabled data. commercial/research vessels. Brent Wood & Gavin
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1 A robust, low cost, GIS enabled data capture & management system for commercial/research vessels. Brent Wood & Gavin Macaulay
2 Wanted! a robust, spatially enabled system for capturing & managing: Trawl data: trawl station, catch and biological data Oceanographic data: CTD & dissolved O2 data, SST Weather data: motion corrected wind speed & direction, temperature & humidity Fisheries acoustic data/metadata Video camera station data & videos Vessel position & attitude data: GPS & pitch/roll Specimen photographs
3 Why? To provide research vessel quality data capture & management for a 45m commercial trawler used for about 10 months worth of fisheries/oceanographic survey in the Arabian Sea off Oman.
4 Solution: a mix of hardware & software plus Solution: a mix of hardware & software plus instruments
5 Solution: a mix of hardware & software plus instruments Feed all data from all real time instruments onto the network for capture into files & databases. Capture all non-real time data and upload into database. Ensure data security by automatic backups to on-line NAS. Ensure server capability by automatically maintaining a duplicate server able to take over if required.
6 Solution: a mix of hardware & software plus instruments Instrument hardware: SST: Seabird SBE38 seawater temperature sensor Weather: Airmar PB-100 integrated weather station Pitch/roll: Microstrain 3DM-GX1 Position: vessel GPS (NMEA) Bridge air temperature: Papouch RS232 thermometer CTD: RBR datalogger (CTD + O2) Echosounders: 3x Simrad EK60 at 38, 120 & 200 Khz Satellite comms: ISDN over Inmarsat F77 using Cisco modem/router Time server: Ships GPS via NTP on networked Linux server NIWA digital measuring systems stems
7 Solution: a mix of hardware & software plus instruments Computer related hardware: 4x SFF PC's, 2 Linux, 2 Windows (Shuttle) 3x NIWA fish measuring system controllers 1x general purpose laptop 3x 5 port Gb network switches 1x 400Gb NAS RAID device HP inkjet printer 2 port KVM switch APC 800W UPS 8 port serial to ethernet converter (Comtrol DeviceMaster RTS-8)
8 Solution: a mix of hardware & software plus instruments Software: Server & w/s O/S: Fedora Core Linux (x2), Windows XP Pro (x2) Laptop O/S: Windows XP Pro echosounder software: Simrad ER60 Database: PostGIS & MS Access Data logging: Aggsoft Advanced TCP/IP data logger Office suite: MS Office & OpenOffice Photo manipulation: Adobe Photoshop Elements/GIMP Basic video editing: RealVNC Viewer Thunderbird, SquirrelMail GIS: QGIS, GMT, PostGIS Windows file backups: Delta Copy
9 Data capture serial instrum ents Serial Comtrol RTS8 echosou nders LAN databas e/file manual instrume nts custom software (Video: direct to DVD & duplicated ( p manually)
10 Data capture Data from instruments providing a serial output was fed into the Comtrol RTS8 serial to ethernet t converter and captured to file by the Advanced TCP/IP data logging software. Data from devices such as the RTR CTD datalogger were downloaded manually using the appropriate application. Station data was captured during each station on paper p forms & entered into an Access database using a custom Access form. Catch and biological data (length/weight/stage) was captured using NIWA's custom software, and uploaded into the Access database.
11 Data capture biological data from specimens caught were captured using NIWA's proprietary measuring/recording systems.
12 Filesystems & data backup The Access database is exported to a shared drive on the Linux server. All data files & photos are stored on shared drives on the Linux server Linux PostGIS server is rsync'd to replica inactive backup server PC. Acoustic files are replicated (via DeltaCopy) on the Linux server All server files are rsync'd to the NAS automatically
13 Network printe r main backup general NAS acoustics Linux Linux purpose backup PC server server pc system Gb switc h Cisco ISDN Modem/ router Comtrol RTS8 converter
14 the GIS stuff! PostGIS: OGR compliant spatial data management & query tool for the Postgresql RDBMS QGIS: flexible GUI based data viewer for chaecking & looking at the data in a map context GMT: command line (script) powerful cartographic tool for semi-automated publication quality map production
15 the GIS stuff! PostGIS: OGR compliant spatial data management & query tool for the Postgresql RDBMS Essentially adds spatial datatypes, overlay & measurement functions, operators & query capabilities to the free Postgresql RDBMS. Data stored in PostGIS tables can be read directly with several GIS applications, or extracted in a variety of GIS formats.
16 the GIS stuff! PostGIS: OGR compliant spatial data management & query tool for the Postgresql RDBMS oman=# \d oman_transect_line; Table "public.oman_transect_line" Column Type Modifiers gid integer not null num integer the_geom geometry
17 the GIS stuff! PostGIS: OGR compliant spatial data management & query tool for the Postgresql RDBMS oman=# select gid, num, astext(the_geom) from oman_transect_line limit 1; gid 0 num 1 astext LINESTRING( ,...
18 the GIS stuff! QGIS: flexible GUI based data viewer for checking & looking at the data in a map context QGIS is a free multi-platform GIS package. It can natively open a range of raster, vector & web GIS data formats. It is simple to use, but has limited it analysis & cartographic capabilities. It is a useful tool for viewing & checking GIS data.
19 the GIS stuff! QGIS: flexible GUI based data viewer for checking & looking at the data interactively in a map context.
20 the GIS stuff! GMT: command line (script) powerful cartographic tool for semi- automated publication quality map production. Generic Mapping Tools is a free command line suite of tools for working with gridded d data and producing high h quality cartographic output. Scripts to generate publication quality maps from the captured data were a part of the overall system installed on board Al Mustaqila 1.
21 Maps!! catch by species/trip via GMT
22 length frequency histograms by GMT Maps!!
23 Maps!! length/weight plots by species via GMT
24 Summary the system as built robustly collected all data captured by the instruments and other devices and inserted them into a spatially enabled database supporting interactive GIS access for data queries and validation as well as on-demand map production for reports.
25 Acknowledgements: NIWA (National Institute for Water and Atmospheric Research Oman Ministry i of Fisheries i Wealth Independent Fisheries Limited Shallard and Associates
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