EUDAT. Towards a pan-european Collaborative Data Infrastructure. KNMI Workshop, Utrecht, Netherlands

Transcription

1 EUDAT Towards a pan-european Collaborative Data Infrastructure Giuseppe Fiameni, Claudio Cacciari SuperComputing Centre, CINECA, Italy Peter Wittenburg, Daan Broeder The Language Archive, Max Planck Institute, Netherlands KNMI Workshop, Utrecht, Netherlands Date:9 th February 2012

2 Outline of the talk Introduction Towards a Collaborative Data Infrastructure EPOS Data Landscape Task Forces Ongoing Activities 2

3 EUDAT Key facts Content Project Name EUDAT European Data Start date 1st October 2011 DuraBon Budget 36 months 16,3 M (including 9,3 M from the EC) EC call Call 9 (INFRA ): Data infrastructure for e- Science ( ) ParBcipants ObjecBves 25 partners from 13 countries (nabonal data enters, technology providers, research communibes, and funding agencies) To deliver cost- efficient and high quality CollaboraBve Data Infrastructure (CDI) with the capacity and capability for meebng researchers needs in a flexible and sustainable way, across geographical and disciplinary boundaries. 3

4 Common Data Infrastructure need experts close to the CLARIN, LifeWatch, ENES, communibes knowing the EPOS, tvradibons PH, etc. and methods, 5 Core cultures Infrastructures (research infrastructures) need a layer to take care => 10 EaUDAT data centers about ll common, cross- discipline services indeed some heterogeneity at both levels Interviews based on Abstract Data Object Model (interviews fostered architecture clarifications) 4

5 Common Data Infrastructure EPOS EUDAT Interviews based on Abstract Data Object Model (interviews fostered architecture clarifications) 5

6 EUDAT Core Service Areas Community-oriented services Simple Data Acces and upload Long term preservation Shared workspaces Execution and workflow (data mining, etc.) Joint metadata and data visibility Core services are building blocks of EUDAT s Common Data Infrastructure mainly included on bottom layer of data services Enabling services (making use of existing services where possible Persistent identifier service (EPIC, DataCite) Federated AAI service Network Services Monitoring and accounting

7 Research Communities

8 EUDAT service design activities 1. Capturing Communities Requirements (WP4) 1st round of interviews with the five initial communities (Oct.-Dec. 2012) Understand how data is organised in each community Collect first wishes and specific requirements from a common data service layer Next phase: refine analysis and expanding it to other communities 2. Building the corresponding services (WP5) Technology appraisal (ongoing) What is already available at partners s sites to build the corresponding services? What are the gaps and market failures that should be addressed by EUDAT? Next phase: Developing candidate services Adapt services to match the requirements Integrate with community and SP services Test and evaluate with communities 3. Deploying the services and operating the federated infrastructure (WP6) Designing the federated infrastructure and the interfaces for cross-site operations (ongoing) Next phase: integrating and coordinating resource provision, operations and support

9 Community Service Wishes In Progress as Services (Task Forces set up) Safe Data Replication (for Bit-stream Preservation & Access Optimization) Dynamic Data Replication into HPC Workspace In SpecificaAon/Discussion as Services Aggregated EUDAT Metadata Domain Researcher Data Store (Simple Upload, Share and Access) In Progress as Research Issues (WP7) more elaborate policy rules and federation scalability generic workflow execution framework (automatic annotation, data mining, etc.) All 5 core communities basically share same service wishes slightly different priorities

10 Data Landscape Analysis Static representation of a data repository Present how data are organized, registered and stored Define a common reference model to avoid misunderstandings, limit confusion, set a common baseline requests requests handle generator receives disseminabons via RAP originator depositor repository A user work ownership hands- over data metadata (Key- MD) PID access rights deposits via RAP stores registered DO - data - metadata (Key- MD) maintains PID property record rights type (from central registry) ROR flag mutable flag transacbon record replicates repository B Kahn s Digital Object Architecture (1995, 2006) 10

11 Data Landscape Analysis: EPOS EPOS (Seismologists, Vulcanologists, etc.) lots of distributed data sensors producing continuous package streams due to various reasons data streams include gaps to be filled over time data windows of interest (WoI) are defined vulcano eruption X aggregations of such data are of relevance (large scale statistics etc) work currently on a description of metadata schema for WoIs work on a scheme of how to refer to packages and offsets (Handles, fragments) one center is now implementing reference architecture need to synchronize with US and other colleagues data sensor data sensor data sensor data center data center EPOS virtual aggregation offset PIDx#refA,refB PIDy#refC,refD window center X t center Y 11

12 Data Landscape Analysis: EPOS Still a proposal! 12

13 Back to community Service Wishes In Progress as Services (Task Forces) Safe Data Replication (for Bit-stream Preservation & Access Optimation) Dynamic Data Replication into HPC Workspace (led by CINECA) In SpecificaAon/Discussion as Services Aggregated EUDAT Metadata Domain Researcher Data Store (Simple Upload, Share and Access) In Progress as Research Issues (WP7) more elaborate policy rules and federation scalability generic workflow execution framework (automatic annotation, data mining, etc.)

14 SAFE Data Replication (1/2) Relevant data needs to be replicated from community centers at a number of data centers in a safe way with several purposes in mind: data bitstream preservation more optimal data curation better accessibility of data Replace/Improve/Enhance ArcLink functionalities? Through ArcLink it is possible to combine seismic waveform archives, therefore it might be seen as a synchronization, not a replication tool.

15 SAFE Data Replication (2/2) safe replication between 1 community center and N data centers flexibility, scalability and management require policy rule based approach 3 islands (community + data center) in parallel & close interaction basic technlogies: AAI, irods, Handles, community MD & OAI-PMH, center registry in June merging of 3 islands to one flexible replication domain REPLIX experience is basis Expert Task Force built, to be ready in summer

16 Staging to HPC Pipes intention is to make use of HPC machines for computations on stored data different configurations possible: computations on a single HPC node where data already is computations on multiple nodes - use of PRACE fast distributed file system Expert Task Force built, to be ready in summer principles: user issues a compute command script pushes data into the HPC workspace, results go into workspace input data is discarded after job end, user needs to store the results

17 PID Howto transfer From which #TB Which or PB to EUDAT tool to HPC use: site X site Howto GridFTP, A,B or C to get Scp, access irods? all sites? EUDAT LTA EUDAT SP site B GridFTP scp 1Gb/s WAN HPC EUDAT site SP X site X EUDAT LTA HPC 10Gb/s WAN space Globus Online PID EUDA T LTA EUDAT SP site C irods Bijorrent? 10Gb/s OPN PID EUDA T LTA EUDAT SP site A

18

19 Dynamic Data Replication Data transport protocols: GridFTP, HTTP. SCP, FTP, RSYNC, OpenDap? WAN Which tool to manage the transfers: irods, Globus Online, FTS, RSYNC, Others.? PID EUDA T LTA EUDAT SP site A WAN Third party transfers Dedicated OPN Third party transfers HPC site X HPC space

20 Dynamic Data Replication - 1 Workflow framework Stage 1 Stage 2 Stage # PID EUDAT LTA EUDAT SP site A Data Mining cluster

21 Dynamic Data Replication 2 Workflow framework Stage 1 Stage 2 Stage # PID EUDAT LTA EUDAT SP site A Data Mining cluster Data Mining cluster

22 Dynamic Data Replication 3 Data transport protocols: GridFTP, HTTP. SCP, FTP, RSYNC, OpenDap? WAN Which tool to manage the transfers: irods, Globus Online, FTS, RSYNC, Others.? PRACE T0 PRACE T1 HPC space Dedicated OPN Third party transfers HPC space

23 Aggregated Metadata Domain not yet fully specified question: for what??? probably loss of specific information - thus interdisciplinary research should show what is stored in the EUDAT data centers one stop shop for virtual collection building making PR for collections (ANDS model) general index with some faceted browsing machine probably not sufficient element semantics probably too different therefore currently analysis of semantics and simple mapping schemes enabling technologies: OAI-PMH, refs via PIDs, SOLR/Lucene for indexing/browsing when and how semantic expansion do we need higher performance technology? decision about criteria in February technology watch in March

24 Aggregated Metadata Domain - EPOS EPOS has elaborated a proposal for the metadata definition EPOS might require three different meta-data models: a simple flat metadata standard for discovery; (flat metadata means it is a single record with attributes rather than a group of linked records each with attributes and with relationships between the records); a structured (linked entity) standard for context (relating the dataset to provenance, purpose, environment in which generated etc); a detailed metadata standards for each kind of data to be co-processed.

25 Aggregated Metadata Domain - EPOS Proposed Standards Simple Structured Discovery : Dublin Core (hjp://en.wikipedia.org/wiki/ Dublin_Core) Contextual: CERIF (Common European Research InformaBon Format, hjp://en.wikipedia.org/wiki/cerif) Detailed CSMD (hjp:// 149) INSPIRE 1 (hjp://inspire.jrc.ec.europa.eu/) ISO (hjp://

26 Authentication Authorization Infrastructure Task force implementation plan under review question: Federate existing AAI systems to provide unified access to available resources enabling technologies: X.509, Shibboleth, OpenID, OpenAuth, etc.

27 Researchers Simple Store not yet fully specified question: for what??? researchers need/want Simple Store for all their secondary data trust is an important issue - owner/copyright must be (with) the researcher data should be part of the EUDAT data domain (thus Metadata, PIDs) ingest via community control to prevent misuse Simple Store must have simple access component (like YouTube) and perhaps easy promotion of data into community center collections enabling technologies: AAI, PIDs, MD Indexing decision about criteria in February technology watch in April (what about Mercury etc.)

28 EUDAT CDI Summary understand data organizations as bottom-up exercise determine common functions needed determine essential independent components with chance of wide acceptance PID system, center registry, metadata landscape define agreed APIs for different components rely on policy-rule based approach currently implementation of procedures for 3 islands probably need to extract common characteristics to scale up are looking for close collaboration with others (US, etc.)

29 On going activities IGNV, CINECA, KNMI irods installation at INGV GridFTP installation at INGV Ingestion of seed streams in an irods vault (storage resource) transfer of data from INGV to CINECA using slarchiver + python script Handle System (PID) installation at CINECA Consolidation of the data organization model (see Data Landscape) Definition of a meta-data schema (KNMI) Periodic meetings Many to come J

30 EUDAT User Forum 30

31 Welcome to the 1st EUDAT Conference 5-8 November 2012, Barcelona A high level international event where EUDAT first results will be demonstrated A forum to discuss the future of EUDAT and data infrastructures 2nd EUDAT User Forum Training tutorials 31

32 DAITF EU-US collaboration o Data Access and Interoperability Task Force: to create a global interaction framework, pushing harmonization and standardisation with respect to the abstract data architecture and all its essential components. o Data architecture workshop in Copenhagen (ICRI conference) icordi (new project proposal) o New 2M proposal submitted to the EC in November 2012 (results over eligibility for funding tba shortly) o Project goal: to establish a coordination platform between Europe and the USA to discuss and improve the interoperability of today s and tomorrow s scientific data infrastructures of both continents. Ø fostering discussion between relevant stakeholders in the EU and US over concrete topics related to the interoperability of the data architectures and solutions based on a top-down approach; Ø overcoming the identified challenges and turning the areas of convergence into concrete specifications that can be immediately implemented on both continents by bringing data practitioners together in a bottom-up process; Ø demonstrating through concrete examples of collaboration what works and what are the remaining barriers and challenges to be tackled to achieve full interoperability. 32

33 Thank you! 33