File: /home/ram/desktop/pio_bldlog Page 1 of 8

Transcription

1 File: /home/ram/desktop/pio_bldlog Page 1 of 8 Tue Sep 17 17:11:37 IST 2013 /home/ankush/ankush/test5/bld/pio/pio.bldlog Copying source to CCSM EXEROOT... New build of PIO Running configure... for OS=Linux MACH=userdefined cat: Filepath: No such file or directory cat: Srcfiles: No such file or directory /home/ankush/test5/tools/mksrcfiles cp -f /home/ankush/ankush/test5/bld/pio/filepath /home/ankush/ankush/test5/bld/pio/deppath /home/ankush/test5/tools/mkdepends Deppath Srcfiles > /home/ankush/ankush/test5/bld/pio/depends cd /home/ankush/ankush/test5/bld/pio; \ /opt/app/cesm1_2_0/models/utils/pio/configure --enable-timing CC="pgcc " FC="pgf95 " MPICC="mpicc " MPIFC="mpif90 " FCFLAGS="-i4 -gopt -Mlist -time -Mextend -byteswapio -Mflushz -Kieee -Mfree -I. -I/ home/ankush/ankush/test5/bld/pio -I/usr/local/pgilib/NETCDF4/include -I/usr/local/pgilib/NETCDF4/include - I/ app/cesm1_2_0/models/utils/pio -I/home/ankush/ankush/test5/bld/lib/include" CPPDEFS=" -DLinux - DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH -DNO_R16 -DLinux -DCPRPGI " CFLAGS="-gopt - Mlist -time -O -Mvect=nosse -DLinux -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH - DNO_R16 -DLinux -DCPRPGI -I.. -I. -I/home/ankush/ankush/test5/bld/pio -I/usr/local/pgilib/NETCDF4/ include -I/usr/local/pgilib/NETCDF4/include -I/opt/pgi/linux86-64/2013/mpi/mpich/bin//include -I/home/ ankush/ankush/test5/bld/mct/mct -I/home/ankush/ankush/test5/bld/mct/mpeu -I/home/ankush/ankush/test5/bld/ pio -I/home/ankush/ankush/test5/bld/gptl -I/opt/app/cesm1_2_0/models/utils/pio -I/home/ankush/ankush/ test5/bld/lib/include" NETCDF_PATH=/usr/local/pgilib/NETCDF4 LDFLAGS="-time -Wl,--allow-multipledefinition " LIBS="" --srcdir /opt/app/cesm1_2_0/models/utils/pio checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ISO C89... none needed checking how to run the C preprocessor... pgcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking whether we are using the GNU Fortran compiler... no checking whether pgf95 accepts -g... yes checking for Fortran flag to compile.f90 files... none checking for Fortran flag needed to accept free-form source... none checking for Fortran flag needed to accept 132 column source lines... none checking for Fortran flag to compile preprocessed.f files... none checking how to define symbols for preprocessed Fortran... -D checking for ftn... mpif90 checking for mpif.h... yes checking for Fortran flag to compile.f90 files... (cached) none checking for mpi.mod... yes checking Fortran support for c_sizeof()... no checking Fortran support for sizeof()... yes checking MPI-IO support in MPI implementation... no Full hostname= chandra.local Hostname=chandra Machine=x86_64 OS=Linux checking Fortran 90 module extension... mod checking Fortran 90 module inclusion flag... -I

2 File: /home/ram/desktop/pio_bldlog Page 2 of 8 using NETCDF_PATH from environment checking for Fortran flag to compile.f90 files... (cached) none checking for hdf5... yes checking for H5open in -lhdf5... no checking for H5Dclose in -lhdf5_hl... no configure: Fortran not checked for yet checking for netcdf... /usr/local/pgilib/netcdf4 checking for library containing nc_inq_libvers... -lnetcdf checking for library containing NF_INQ_LIBVERS... -lnetcdff checking for f90 netcdf interface... yes checking for netcdf 4 API... checking for nf90_inq_grps... yes configure: WARNING: PNETCDF_PATH not found in environment, defaulting to /usr/ local/pnetcdf checking for pnetcdf.inc in /usr/local/pnetcdf/include... configure: WARNING: pnetcdf.inc not found in / usr/local/pnetcdf/include disabling pnetcdf support checking for libpnetcdf.a in /usr/local/pnetcdf/lib... configure: WARNING: libpnetcdf.a not found in /usr/ local/pnetcdf/lib disabling pnetcdf support Output Variables: {CC=pgcc } {FC=pgf95 } {CXX=} {MPICC=mpicc } {MPIFC=mpif90 }{MPICXX=} {FPPFLAGS=} {LD=mpif90 } {OPT=} {BIT64=} {REAL8=} {ENDIAN=} {FFLAGS= } {CFLAGS=-gopt -Mlist -time -O -Mvect=nosse - DLinux -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH -DNO_R16 -DLinux -DCPRPGI -I.. -I. - I/home/ankush/ankush/test5/bld/pio -I/usr/local/pgilib/NETCDF4/include -I/usr/local/pgilib/NETCDF4/ include -I/opt/pgi/linux86-64/2013/mpi/mpich/bin//include -I/home/ankush/ankush/test5/bld/mct/mct -I/home/ ankush/ankush/test5/bld/mct/mpeu -I/home/ankush/ankush/test5/bld/pio -I/home/ankush/ankush/test5/bld/gptl -I/opt/app/cesm1_2_0/models/utils/pio -I/home/ankush/ankush/test5/bld/lib/include} {FCFLAGS= -i4 -gopt - Mlist -time -Mextend -byteswapio -Mflushz -Kieee -Mfree -I. -I/home/ankush/ankush/test5/bld/pio -I/usr/ local/pgilib/netcdf4/include -I/usr/local/pgilib/NETCDF4/include -I/opt/pgi/linux86-64/2013/mpi/mpich/ bin//include -I/home/ankush/ankush/test5/bld/mct/mct -I/home/ankush/ankush/test5/bld/mct/mpeu -I/home/ ankush/ankush/test5/bld/pio -I/home/ankush/ankush/test5/bld/gptl -I/opt/app/cesm1_2_0/models/utils/pio -I/ home/ankush/ankush/test5/bld/lib/include -I/usr/local/pgilib/NETCDF4/include} {FC_DEFINE=-D} {MPI_INC=} {MPI_LIB=} {MODINC=} {AR=ar} {ARFLAGS=cq} {USE_PNETCDF=no} {PNETCDF_PATH=/usr/local/pnetcdf} {USE_NETCDF=yes} {NETCDF_PATH=/usr/local/pgilib/NETCDF4} {USE_COMPRESSION=no} {CPPDEFS= -DLinux - DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_SHR_VMATH -DNO_R16 -DLinux -DCPRPGI -DSPMD -DHAVE_MPI - DNO_C_SIZEOF -DSYSLINUX -D_NETCDF -I/usr/local/pgilib/NETCDF4/include -D_NOPNETCDF -DTIMING} {INCLUDEPATH= -I../timing} {LDLIBS= -L/usr/local/pgilib/NETCDF4/lib -lnetcdff -lnetcdf -L../timing - ltiming} {DEBUG=no} configure: creating./config.status config.status: creating Makefile.conf config.status: creating config.h Please check the Makefile.conf Have a nice day! Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pio.f90 --> pio.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pio_kinds.f90 --> pio_kinds.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/nf_mod.f90 --> nf_mod.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/ionf_mod.f90 --> ionf_mod.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pio_types.f90 --> pio_types.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/calcdecomp.f90 --> calcdecomp.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/piolib_mod.f90 --> piolib_mod.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pio_mpi_utils.f90 --> pio_mpi_utils.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pio_nf_utils.f90 --> pio_nf_utils.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pio_utils.f90 --> pio_utils.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pio_msg_mod.f90 --> pio_msg_mod.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/calcdisplace_mod.f90 --> calcdisplace_mod.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pio_msg_callbacks.f90 --> pio_msg_callbacks.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pio_support.f90 --> pio_support.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/c_interface_mod.f90 --> C_interface_mod.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pionfatt_mod.f90 --> pionfatt_mod.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pionfread_mod.f90 --> pionfread_mod.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pionfwrite_mod.f90 --> pionfwrite_mod.d pionfput_mod.f90.in > pionfput_mod.f90 Making dependencies for pionfput_mod.f90 --> pionfput_mod.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pionfget_mod.f90 --> pionfget_mod.d alloc_mod.f90.in > alloc_mod.f90

3 File: /home/ram/desktop/pio_bldlog Page 3 of 8 Making dependencies for alloc_mod.f90 --> alloc_mod.d box_rearrange.f90.in > box_rearrange.f90 Making dependencies for box_rearrange.f90 --> box_rearrange.d rearrange.f90.in > rearrange.f90 Making dependencies for rearrange.f90 --> rearrange.d iompi_mod.f90.in > iompi_mod.f90 Making dependencies for iompi_mod.f90 --> iompi_mod.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/piodarray.f90 --> piodarray.d pio_spmd_utils.f90.in > pio_spmd_utils.f90 Making dependencies for pio_spmd_utils.f90 --> pio_spmd_utils.d Making dependencies for /opt/app/cesm1_2_0/models/utils/pio/pio_msg_getput_callbacks.f90 --> pio_msg_getput_callbacks.d Done updating dependencies gmake[1]: Entering directory `/home/ankush/ankush/test5/bld/pio' include -I../timing /opt/app/cesm1_2_0/models/utils/pio/pio_kinds.f90 import 34 millisecs 11% assemble 250 millisecs 88% 284 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/pio_types.f90 init 17 millisecs 6% import 33 millisecs 13% assemble 200 millisecs 80% 250 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/pio_support.f90 import 151 millisecs 10% expand 83 millisecs 5% schedule 983 millisecs 70% assemble 183 millisecs 13% 1400 millisecs include -I../timing alloc_mod.f90 import 82 millisecs 24%

4 File: /home/ram/desktop/pio_bldlog Page 4 of 8 schedule 251 millisecs 75% 333 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/pio_utils.f90 import 83 millisecs 11% expand 33 millisecs 4% schedule 417 millisecs 56% assemble 200 millisecs 27% 733 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/ionf_mod.f90 import 66 millisecs 8% expand 84 millisecs 10% schedule 633 millisecs 80% 783 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/pionfread_mod.f90 init 16 millisecs 2% import 67 millisecs 8% expand 100 millisecs 12% schedule 617 millisecs 77% 800 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/pio_msg_mod.f90 import 33 millisecs 10% expand 66 millisecs 20% schedule 217 millisecs 68% 316 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/c_interface_mod.f90 0 millisecs

5 File: /home/ram/desktop/pio_bldlog Page 5 of 8 include -I../timing /opt/app/cesm1_2_0/models/utils/pio/nf_mod.f90 PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/nf_mod.f90: 1606) init 50 millisecs 0% import 594 millisecs 7% expand 520 millisecs 6% schedule 6435 millisecs 82% assemble 217 millisecs 2% 7816 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/pionfwrite_mod.f90 import 84 millisecs 10% expand 116 millisecs 13% schedule 634 millisecs 76% 834 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/piovdc.f90 import 16 millisecs 48% schedule 17 millisecs 51% 33 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/pio_mpi_utils.f90 init 17 millisecs 6% import 33 millisecs 13% schedule 200 millisecs 80% 250 millisecs include -I../timing iompi_mod.f90 import 234 millisecs 7% expand 132 millisecs 4% schedule 2417 millisecs 81% assemble 200 millisecs 6% 2983 millisecs

6 File: /home/ram/desktop/pio_bldlog Page 6 of 8 include -I../timing pio_spmd_utils.f90 init 17 millisecs 0% import 149 millisecs 8% expand 117 millisecs 6% schedule 1266 millisecs 71% assemble 217 millisecs 12% 1766 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/calcdisplace_mod.f90 import 17 millisecs 34% expand 17 millisecs 34% schedule 16 millisecs 32% 50 millisecs include -I../timing box_rearrange.f90 init 17 millisecs 0% import 303 millisecs 8% expand 299 millisecs 8% schedule 2798 millisecs 77% assemble 200 millisecs 5% 3617 millisecs include -I../timing rearrange.f90 init 16 millisecs 16% import 17 millisecs 17% schedule 50 millisecs 50% assemble 17 millisecs 17% 100 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/calcdecomp.f90 expand 17 millisecs 100%

7 File: /home/ram/desktop/pio_bldlog Page 7 of 8 17 millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/piodarray.f90 PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 586) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 649) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 712) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 775) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 838) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 901) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 964) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 1027) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 1090) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 1153) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 1216) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 1279) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 1342) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 1405) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 1468) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 1531) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 1594) PGF90-W-0435-Array declared with zero size (/opt/app/cesm1_2_0/models/utils/pio/piodarray.f90: 1657) init 68 millisecs 0% import 1102 millisecs 7% expand 1648 millisecs 10% schedule millisecs 80% assemble 200 millisecs 1% millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/piolib_mod.f90 init 66 millisecs 0% import 851 millisecs 8% expand 684 millisecs 6% schedule 8699 millisecs 82% assemble 200 millisecs 1% millisecs include -I../timing /opt/app/cesm1_2_0/models/utils/pio/pionfatt_mod.f90 import 67 millisecs 28% expand 33 millisecs 14% schedule 133 millisecs 57% 233 millisecs

8 File: /home/ram/desktop/pio_bldlog Page 8 of 8 include -I../timing pionfput_mod.f90 PGF90-W-0435-Array declared with zero size (pionfput_mod.f90: 643) PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 1048) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_3d_text PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 1171) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_4d_text PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 1294) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_5d_text PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 1619) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_3d_int PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 1718) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_4d_int PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 1817) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_5d_int PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 2114) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_3d_real PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 2213) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_4d_real PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 2312) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_5d_real PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 2609) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_3d_double PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 2708) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_4d_double PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 2807) 0 inform, 0 warnings, 1 severes, 0 fatal for put_var_5d_double PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 3887) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_3d_text PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 4009) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_4d_text PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 4131) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_5d_text PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 4480) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_3d_int PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 4596) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_4d_int PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 4712) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_5d_int PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 5060) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_3d_real PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 5176) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_4d_real PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 5292) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_5d_real PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 5640) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_3d_double PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 5756) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_4d_double PGF90-S-0155-Could not resolve generic procedure mpi_bcast (pionfput_mod.f90: 5872) 0 inform, 0 warnings, 1 severes, 0 fatal for put_vara_5d_double gmake[1]: *** [pionfput_mod.o] Error 2 gmake[1]: Leaving directory `/home/ankush/ankush/test5/bld/pio' gmake: *** [all] Error 2