Electrospray Ionization Mass Spectrometric Analysis of Highly Reactive Glycosyl Halides

Size: px
Start display at page:

Download "Electrospray Ionization Mass Spectrometric Analysis of Highly Reactive Glycosyl Halides"

Transcription

1 , ; doi:1.339/molecules Communication OPEN ACCESS molecules ISSN Electrospray Ionization Mass Spectrometric Analysis of Highly Reactive Glycosyl Halides Attila Bokros 1, Annamária Bánfi 1, Zoltán Kupihár 1, *, Zoltán Kele 1, Tünde Zita Illyés 2, János Szolomájer 1 and Lajos Kovács 1, * 1 2 Department of Medicinal Chemistry, Faculty of Medicine, University of Szeged, Dóm tér 8, H-672 Szeged, Hungary; s: bokros.attila@med.u-szeged.hu (A.B.); banfi.annamaria@med.u-szeged.hu (A.B.); kele.zoltan@med.u-szeged.hu (Z.K.); szolomajer.janos@med.u-szeged.hu (J.S.) Department of Organic Chemistry, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, H-41 Debrecen, Hungary; illyes.tunde@science.unideb.hu * Authors to whom correspondence should be addressed; s: kupihar.zoltan@med.u-szeged.hu (Z.K.); kovacs.lajos@med.u-szeged.hu (L.K.); Tel.: ; Fax: Received: 18 May 212; in revised form: 21 June 212 / Accepted: 25 June 212 / Published: 1 July 212 Supplementary Information Unidentified peaks designated by asterisks * and ** have been used as a kind of internal standards to compare the signal intensities of lithium, sodium, potassium and ammonium adduct ions; Identified peaks have labelled in red; The desired molecular ion adducts [M+cation] + are shown in blue circles.

2 S2 Spectrum 1. Analyte 2 in acetonitrile without any adduct forming agent. CH 3 O O Chemical Formu la: C 14 H 19 BrO 9 Exact Mass: ( 79 Br) O 1267 _1_ 21 (.388) Cm (18:25) TOF MS ES O Br * H 3 C O O O O CH 3 CH 3 O [M+CF 3 COOLi+Li] [M +Li]

3 S3 Spectrum 2. Analyte 2 in acetonitrile with 2 formic acid. 1267_1_ 28 (.517) Cm (23:36) * TOF MS ES+ 2.5e ** [M+Na]

4 S4 Spectrum 3. Analyte 2 in acetonitrile with LiCl. LiCl 1267_1_1 24 (.443) Cm (23:29) [M+CF 3 COOLi+Li] TOF MS ES+ 3.5e [M+Li] *

5 S5 Spectrum 4. Analyte 2 in acetonitrile with NaCl. NaCl 1267_1_2 25 (.461) Cm (24:29) * TOF MS ES+ 1.74e3 ** [M+Na] + [M+CF 3 COOLi+Li] [M+Li] [M+CF 3 COOLi+Na]

6 S6 Spectrum 5. Analyte 2 in acetonitrile with KCl. KCl 1267_1_3 28 (.517) Cm (27:35) * TOF MS ES+ 2.27e3 ** [M+Na] [M+K] + [M+CF 3 COOLi+Li] + [M+CF 3 COOLi+Na]

7 S7 Spectrum 6. Analyte 2 in acetonitrile with LiNO 3. gli br + LiNO3 poz 12611_5 26 (.48) Cm (23:39) TOF MS ES e3 [M+Li] + [M+LiNO 3 +Li] [M+CF 3 COOLi+Li] *

8 S8 Spectrum 7. Analyte 2 in acetonitrile with NaNO 3. NaNO3 1267_2_2 25 (.461) Cm (25:32) ** TOF MS ES+ 3.41e3 * [M+Na]

9 S9 Spectrum 8. Analyte 2 in acetonitrile with KNO 3. KNO3 1267_2_3 23 (.424) Cm (22:31) TOF MS ES+ 3.e3 * ** [M+K] [M+Na]

10 S1 Spectrum 9. Analyte 2 in acetonitrile with LiClO 4. [M+Li] + gli br + LiClO4 poz 12611_6 27 (.498) Cm (23:33) TOF MS ES e3 [M+LiClO 4 +Li] *

11 S11 Spectrum 1. Analyte 2 in acetonitrile with NaClO 4. NaClO4 1267_3_2 25 (.463) Cm (24:4) [M+Na] TOF MS ES+ 2.38e3 ** [M+NaClO 4 +Na] *

12 S12 Spectrum 11. Analyte 2 in acetonitrile with KClO 4. KClO4 1267_3_3 26 (.48) Cm (26:35) ** TOF MS ES+ 4.69e3 [M+K] [M+Na] *

13 S13 Spectrum 12. Analyte 2 in acetonitrile with NH 4 Cl. NH4Cl 1267_1_4 26 (.48) Cm (25:34) ** TOF MS ES+ 4.13e3 [M+Na] * [M+NH 4 ] [M+K]

14 S14 Spectrum 13. Analyte 2 in acetonitrile with NH 4 NO 3. NH4NO3 1267_2_4 25 (.461) Cm (24:34) ** TOF MS ES+ 2.73e3 * [M+Na] [M+NH 4 ] + [M+K]

15 S15 Spectrum 14. Analyte 2 in acetonitrile with NH 4 OOCCH 3. NH4oac 1267_4_5 25 (.461) Cm (24:33) * ** TOF MS ES+ 2.8e [M+Na] [M+NH 4 ]

16 S16 Spectrum 15. Analyte 2 in acetonitrile with NH 4 OOCH. NH4form 1267_4_6 3 (.556) Cm (28:39) * TOF MS ES+ 3.e3 ** [M+NH 4 ] [M+Na]

17 S17 Spectrum 16. Analyte 2 in acetonitrile with NH 4 HCO 3. NH4HCO3 1267_4_7 22 (.46) Cm (22:32) * ** TOF MS ES+ 2.91e [M+NH 4 ] [M+Na]

18 S18 Spectrum 17. Analyte 2 in acetonitrile with LiBr. [M+Li] + gli br + LiBr poz 12611_4 35 (.646) Cm (32:44) TOF MS ES e3 [M+LiBr+Li]

19 S19 Spectrum 18. Analyte 2 in acetonitrile with LiI. [M+Li] + gli br + LiI poz 12611_3 36 (.664) Cm (34:44) TOF MS ES e3 [M+LiI+Li]

20 S2 Spectrum 19. Analyte 2 in acetonitrile with LiF (negative ion mode) _BRGLI_NAF_NEG 29 (.535) Cm (24:36) 113. [CF 3 TOF MS ES- 55 [Br] [2CF 3 COOLi+CF [CF 3 COOLi+CF [3CF 3 COOLi+CF

21 S21 Spectrum 2. Analyte 2 in acetonitrile with LiCl (negative ion mode) _qp_brgli_neg 18 (.442) Cm (17:24) [2CF 3 COOLi+CF : TOF MS ES- 44 [3CF 3 COOLi+CF 3 [3CF 3 COOLi+Cl] [4CF 3 COOLi+CF [CF 3 COOLi+CF 3 [5CF 3 COOLi+CF [CF [4CF 3 COOLi+Cl]

22 S22 Spectrum 21. Analyte 2 in acetonitrile with LiBr (negative ion mode). [4LiBr+Br] - gli br + LiBr neg 12611_1 28 (.517) Cm (22:46) TOF MS ES e3 [LiBr+Br] [CF 3 COOLi+3LiBr+Br] - [CF 3 COOLi+2LiBr+Br] [5LiBr+Br] - [2CF 3 COOLi+CF [CF 3 COOLi+CF [2LiBr+Br] [3LiBr+Br] [CF 3 COOLi+Br] - [CF 3 COOLi+LiBr+Br] [Br]

23 S23 Spectrum 22. Analyte 2 in acetonitrile with LiBr (negative ion mode). gli br + LiI neg 12611_2 4 (.738) Cm (38:52) [4LiI+I] - TOF MS ES e4 [2LiI+I] [CF 3 COOLi+LiI+I] [3LiI+I] [CF 3 COOLi+2LiI+I] [CF 3 COOLi+3LiI+I] [3LiI+NaI+I] - [5LiI+I] [2CF 3 COOLi+LiI+I] [CF 3 COOLi+4LiI+I] - [2CF 3 COOLi+2LiI+I] [3CF 3 COOLi+I] - [2CF 3 COOLi+3LiI+I]

24 S24 Spectrum 23. Analyte 2 in acetonitrile with NH 4 OOCCH 3 (negative ion mode) _BRGLI_NH4OAC_NEG 19 (2.1) Cm (16:117) [Br] - TOF MS ES- 1.15e3 [2CF 3 COOLi+CF [CF [CF 3 COOLi+CF [3CF 3 COOLi+CF

25 S25 Spectrum 24. Accurate mass analysis of analyte 1 in acetonitrile with LiCl. LiCl MeCN 12612_qp_clgli_poshrms 134 (3.292) AM (Cen,4, 8., Ht,86.,785.84,.7,LS 5); Sm (SG, 3x5.); Sb (15,1. ); Cm (133:138) [M( 35 Cl)+Li] + 1: TOF MS ES+ 1.64e

26 S26 Table 25. Report of accurate mass analysis of analyte 1 in acetonitrile with LiCl. Elemental Composition Report Single Mass Analysis Tolerance = 1. PPM / DBE: min = -1.5, max = 5. Element prediction: Off Number of isotope peaks used for i-fit = 3 Monoisotopic Mass, Even Electron Ions 65 formula(e) evaluated with 1 results within limits (all results (up to ) for each mass) Elements Used: C: -5 H: - 7Li: 1-1 O: -2 35Cl: 1-1 Minimum: -1.5 Maximum: Mass (Norm) Calc. Mass Formula mda PPM DBE i-fit i-fit C21 H21 7Li O5 35Cl

27 S27 Spectrum 26. CID spectrum of peaks 537/539 of analyte 2 in acetonitrile-licl at low collision energy. pljusz 12615_GLIBR_LICL_ (.627) Cm (32:34) [M+CF 3 COOLi+Li] + TOF MSMS 537.2ES [M+Li]

28 S28 Spectrum 27. CID spectrum of peaks 417/419 and 537/539 of analyte 2 in acetonitrile-licl at high collision energy. pljusz 12615_GLIBR_LICL_ (.424) Cm (21:27) [M-HBr+Li] + TOF MSMS 417.2ES+ 3.32e [M+Li] _GLIBR_LICL_ (.775) Cm (38:5) [M-HBr+Li] + TOF MSMS 537.2ES+ 2.44e3 [M+Li] [M+CF 3 COOLi+Li]

Application Note. Abstract. Authors. Forensic Toxicology

Application Note. Abstract. Authors. Forensic Toxicology An Application Kit for the Screening of Samples for Analytes of Forensic Toxicological Interest using TOF or Q-TOF LC/MS with a Personal Forensic Toxicology Database Application Note Forensic Toxicology

More information

MultiGlycan ESI User Manual

MultiGlycan ESI User Manual MultiGlycan ESI User Manual 1. Download User can download the latest MultiGlycan ESI from our website http://darwin.informatics.indiana.edu/multiglycan/ 2. Installation 2.1. Unzip Unzip downloaded file

More information

MS-FINDER tutorial. Last edited in Aug 10, 2018

MS-FINDER tutorial. Last edited in Aug 10, 2018 MS-FINDER tutorial Last edited in Aug 10, 2018 Abstract The purpose of metabolomics is to perform the comprehensive analysis for small biomolecules of living organisms. Gas chromatography coupled with

More information

MassHunter Personal Compound Database and Library Manager for Forensic Toxicology

MassHunter Personal Compound Database and Library Manager for Forensic Toxicology MassHunter Personal Compound Database and Library Manager for Forensic Toxicology Quick Start Guide What is MassHunter Personal Compound Database and Library Manager? 2 Installation 3 Main Window 4 Getting

More information

MassHunter Pesticides PCD or PCDL Quick Start Guide

MassHunter Pesticides PCD or PCDL Quick Start Guide MassHunter Pesticides PCD or PCDL Quick Start Guide What is the MassHunter Pesticides PCD or PCDL? 3 Kit Contents 4 Where to find more information Before You Begin 7 Installation 7 Required reagents and

More information

Agilent G6854 MassHunter Personal Pesticide Database

Agilent G6854 MassHunter Personal Pesticide Database Agilent G6854 MassHunter Personal Pesticide Database Quick Start Guide What is MassHunter Personal Pesticide Database? 2 Installation 3 Main Window 4 Getting Started 11 Database operations 12 Searching

More information

Agilent G6854AA MassHunter Personal Pesticide Database Kit Quick Start Guide

Agilent G6854AA MassHunter Personal Pesticide Database Kit Quick Start Guide Agilent G6854AA MassHunter Personal Pesticide Database Kit Quick Start Guide What is the MassHunter Personal Pesticide Database Kit? 1 Kit Content 2 Where to find more information 3 Before You Begin 4

More information

MS-FINDER tutorial. Last edited in Sep. 10, 2018

MS-FINDER tutorial. Last edited in Sep. 10, 2018 MS-FINDER tutorial Last edited in Sep. 10, 2018 Abstract The purpose of metabolomics is to perform the comprehensive analysis for small biomolecules of living organisms. Gas chromatography coupled with

More information

Agilent G6855AA MassHunter Personal

Agilent G6855AA MassHunter Personal Agilent G6855AA MassHunter Personal Forensic Toxicology Database Kit Quick Start Guide What is the MassHunter Personal Forensic Toxicology Database Kit? 1 Kit Content 2 Where to find more information 4

More information

Supporting Information

Supporting Information Supporting Information Quantitative Profiling of Oxidized Phospholipids in Lipoproteins from Patients with Coronary Artery Disease by Hollow Fiber Flow Field-Flow Fractionation and Nanoflow Liquid Chromatography-Tandem

More information

Validation of a Direct Analysis in Real Time Mass Spectrometry (DART-MS) Method for the Quantitation of Six Carbon Sugar in Saccharification Matrix

Validation of a Direct Analysis in Real Time Mass Spectrometry (DART-MS) Method for the Quantitation of Six Carbon Sugar in Saccharification Matrix Validation of a Direct Analysis in Real Time Mass Spectrometry (DART-MS) Method for the Quantitation of Six Carbon Sugar in Saccharification Matrix Daudi Saang onyo, a,b Gary Selby b and Darrin L. Smith*

More information

Agilent G6854AA MassHunter Personal Compound Database

Agilent G6854AA MassHunter Personal Compound Database Agilent G6854AA MassHunter Personal Compound Database Quick Start Guide This guide describes how to install and use MassHunter Personal Compound Database. Where to find more information What is Personal

More information

Overview of Ibis Forensic Analysis Software

Overview of Ibis Forensic Analysis Software Thomas Hall, Ph.D. Overview of Ibis Forensic Analysis Software Outline General software interface Features Data processing Data analysis mtdna SNPs Forensic SNP Analysis Overview of Ibis Forensic Analysis

More information

Skyline High Resolution Metabolomics (Draft)

Skyline High Resolution Metabolomics (Draft) Skyline High Resolution Metabolomics (Draft) The Skyline Targeted Proteomics Environment provides informative visual displays of the raw mass spectrometer data you import into your Skyline documents. Originally

More information

TraceFinder Administrator Quick Reference Guide

TraceFinder Administrator Quick Reference Guide TraceFinder Administrator Quick Reference Guide This quick reference guide discusses the application configuration tasks assigned to the ITAdmin and LabDirector roles when user security is activated in

More information

Teach Yourself Microsoft Word Topic 5 - Revision, Font and Paragraph Tips

Teach Yourself Microsoft Word Topic 5 - Revision, Font and Paragraph Tips http://www.gerrykruyer.com Teach Yourself Microsoft Word Topic 5 - Revision, Font and Paragraph Tips In this introduction to Level 2 Microsoft Word you will revise basic concepts from the Level 1 course,

More information

OpenLynx User's Guide

OpenLynx User's Guide OpenLynx User s Guide OpenLynx User's Guide Version 4.0 Waters part No 715000405 Micromass Part No - 6666670 5 February, 2002 i OpenLynx User s Guide OpenLynx User s Guide The software described in this

More information

ISO/TS IDF/RM 230

ISO/TS IDF/RM 230 TECHNICAL SPECIFICATION ISO/TS 15495 IDF/RM 230 First edition 2010-11-01 Milk, milk products and infant formulae Guidelines for the quantitative determination of melamine and cyanuric acid by LC-MS/MS

More information

Protein Deconvolution Quick Start Guide

Protein Deconvolution Quick Start Guide Protein Deconvolution Quick Start Guide The electrospray ionization (ESI) of intact peptides and proteins produces mass spectra containing a series of multiply charged ions with associated mass-to-charge

More information

LC-MS Peak Annotation and Identification

LC-MS Peak Annotation and Identification LC-MS Peak Annotation and Identification with CAMERA Carsten Kuhl, Ralf Tautenhahn and Steffen Neumann October 30, 2017 1 Introduction The R-package CAMERA is a Collection of Algorithms for MEtabolite

More information

Progenesis CoMet User Guide

Progenesis CoMet User Guide Progenesis CoMet User Guide Analysis workflow guidelines for version 2.0 Contents Introduction... 3 How to use this document... 3 How can I analyse my own runs using CoMet?... 3 LC-MS Data used in this

More information

LC-MS Data Pre-Processing. Xiuxia Du, Ph.D. Department of Bioinformatics and Genomics University of North Carolina at Charlotte

LC-MS Data Pre-Processing. Xiuxia Du, Ph.D. Department of Bioinformatics and Genomics University of North Carolina at Charlotte LC-MS Data Pre-Processing Xiuxia Du, Ph.D. Department of Bioinformatics and Genomics University of North Carolina at Charlotte Outline Raw LC-MS data - Profile and centroid data - Mass vs. retention time

More information

Xcalibur. QuickQuan. User Guide. XCALI Revision C July For Research Use Only Not for use in Diagnostic Procedures

Xcalibur. QuickQuan. User Guide. XCALI Revision C July For Research Use Only Not for use in Diagnostic Procedures Xcalibur QuickQuan User Guide XCALI-97195 Revision C July 2007 For Research Use Only Not for use in Diagnostic Procedures 2007 Thermo Fisher Scientific Inc. All rights reserved. Microsoft, Access, Excel,

More information

Spectrum Mill B Creating Custom Modifications and Search Modes. A Guide for System Administrators

Spectrum Mill B Creating Custom Modifications and Search Modes. A Guide for System Administrators Spectrum Mill B.04.00 Creating Custom Modifications and Search Modes A Guide for System Administrators Table of Contents Spectrum Mill B.04.00 Creating Custom Modifications and Search Modes... i 1 Overview...

More information

Supporting Information Treatment of Vinca minor Leaves with Methyl Jasmonate Extensively Alters the Pattern and Composition of Indole Alkaloids

Supporting Information Treatment of Vinca minor Leaves with Methyl Jasmonate Extensively Alters the Pattern and Composition of Indole Alkaloids Supporting Information Treatment of Vinca minor Leaves with Methyl Jasmonate Extensively Alters the Pattern and Composition of Indole Alkaloids Sara Abouzeid, Ulrike Beutling, Frank Surup, Fatma M. Abdel

More information

Determination of suppressor with CVS using the calibration technique smartdt with dynamic addition volumes

Determination of suppressor with CVS using the calibration technique smartdt with dynamic addition volumes The Application Bulletin describes the determination of suppressor in acid copper baths by smartdt. The determination of suppressor with dilution titration (DT) involves numerous additions with standard

More information

ISO INTERNATIONAL STANDARD. Soil quality Determination of ph. Qualité du sol Détermination du ph. Second edition

ISO INTERNATIONAL STANDARD. Soil quality Determination of ph. Qualité du sol Détermination du ph. Second edition INTERNATIONAL STANDARD ISO 10390 Second edition 2005-02-15 Soil quality Determination of ph Qualité du sol Détermination du ph Reference number ISO 10390:2005(E) ISO 2005 ISO 10390:2005(E) PDF disclaimer

More information

Update on Data Acquisition Software Improvements Since Last Year. Additional Critical Orifices

Update on Data Acquisition Software Improvements Since Last Year. Additional Critical Orifices 4 th AMS Users Meeting Update on Data Acquisition Software Improvements Since Last Year Jose-Luis Jimenez Caltech Pasadena, CA Oct. 24-27, 2002 Additional Critical Orifices We can have 110 um and 130 um

More information

Agilent G6825AA METLIN Personal Metabolite Database for MassHunter Workstation

Agilent G6825AA METLIN Personal Metabolite Database for MassHunter Workstation Agilent G6825AA METLIN Personal Metabolite Database for MassHunter Workstation Quick Start Guide This guide describes how to install and use METLIN Personal Metabolite Database for MassHunter Workstation.

More information

Curatr: a web application for creating, curating, and sharing a mass spectral library

Curatr: a web application for creating, curating, and sharing a mass spectral library Curatr: a web application for creating, curating, and sharing a mass spectral library Andrew Palmer (1), Prasad Phapale (1), Dominik Fay (1), Theodore Alexandrov (1,2) (1) European Molecular Biology Laboratory,

More information

ISO INTERNATIONAL STANDARD. Water quality Digestion for the determination of selected elements in water Part 2: Nitric acid digestion

ISO INTERNATIONAL STANDARD. Water quality Digestion for the determination of selected elements in water Part 2: Nitric acid digestion INTERNATIONAL STANDARD ISO 15587-2 First edition 2002-03-01 Water quality Digestion for the determination of selected elements in water Part 2: Nitric acid digestion Qualité de l'eau Digestion pour la

More information

Hardware Guide. AB SCIEX QTRAP 5500 System

Hardware Guide. AB SCIEX QTRAP 5500 System Hardware Guide AB SCIEX QTRAP 5500 System D1000079384 E May 2010 This document is provided to customers who have purchased AB SCIEX equipment to use in the operation of such AB SCIEX equipment. This document

More information

LAAPTOF - Updates. AMS users meeting

LAAPTOF - Updates. AMS users meeting LAAPTOF - Updates AMS users meeting 2012 2013 1 Instrument AMS users meeting 2012 2013 2 Spectra (oxalic acid) AMS users meeting 2012 2013 3 Spectra (Arizona test dust) AMS users meeting 2012 2013 4 Data

More information

To get started download the dataset, unzip files, start Maven, and follow steps below.

To get started download the dataset, unzip files, start Maven, and follow steps below. Getting Started. This document provides basic overview of Maven functionality. For the purpose of demonstration we will use an example CMV Viral Infection time course dataset. (Dataset Download). There

More information

Andreas Reimann Berlin im Juli 2009

Andreas Reimann Berlin im Juli 2009 Agilent Technologies ASMS 2009 Andreas Reimann Berlin im Juli 2009 New Triple Quad LC/MS Portfolio 6410, 6430 & 6460 Page 2 Comparison of 6400 Series QQQs 6410BA 6430 6460 Sensitivity: 1 pg reserpine S/N

More information

Determination of suppressor with CVS using the calibration technique «smartdt» with dynamic addition volumes

Determination of suppressor with CVS using the calibration technique «smartdt» with dynamic addition volumes technique «smartdt» with dynamic addition volumes The Application Bulletin describes the determination of suppressor in acid copper baths by smartdt. The determination of suppressor with dilution titration

More information

Skyline MS1 Full Scan Filtering

Skyline MS1 Full Scan Filtering Skyline MS1 Full Scan Filtering The Skyline Targeted Proteomics Environment provides informative visual displays of the raw mass spectrometer data you import into your Skyline project. These displays allow

More information

GPS Explorer Software For Protein Identification Using the Applied Biosystems 4700 Proteomics Analyzer

GPS Explorer Software For Protein Identification Using the Applied Biosystems 4700 Proteomics Analyzer GPS Explorer Software For Protein Identification Using the Applied Biosystems 4700 Proteomics Analyzer Getting Started Guide GPS Explorer Software For Protein Identification Using the Applied Biosystems

More information

TraceFinder Analysis Quick Reference Guide

TraceFinder Analysis Quick Reference Guide TraceFinder Analysis Quick Reference Guide This quick reference guide describes the Analysis mode tasks assigned to the Technician role in the Thermo TraceFinder 3.0 analytical software. For detailed descriptions

More information

Annotation of LC-MS metabolomics datasets by the metams package

Annotation of LC-MS metabolomics datasets by the metams package Annotation of LC-MS metabolomics datasets by the metams package Pietro Franceschi April 30, 2018 1 Introduction metams is designed to perform the analysis of LC-MS and GC-MSbased metabolomics assays. For

More information

Statistical Process Control in Proteomics SProCoP

Statistical Process Control in Proteomics SProCoP Statistical Process Control in Proteomics SProCoP This tutorial will guide you through the installation of SProCoP and using it to perform statistical analysis on a sample Skyline file. Getting Started

More information

Novel Enzymatic Synthesis of 4-O-Cinnamoyl Quinic and Shikimic Acid Derivatives

Novel Enzymatic Synthesis of 4-O-Cinnamoyl Quinic and Shikimic Acid Derivatives Revised: May 003 Novel Enzymatic Synthesis of --Cinnamoyl Quinic and Shikimic Acid Derivatives Nuria Armesto, Miguel Ferrero, Susana Fernández, and Vicente Gotor* Departamento de Química rgánica e Inorgánica,

More information

Supporting Information for: 1: Kansas State University, Department of Chemistry, 213 CB Building, 1212 Mid-Campus

Supporting Information for: 1: Kansas State University, Department of Chemistry, 213 CB Building, 1212 Mid-Campus Supporting Information for: Insights from Theory and Experiment on the Photochromic spiro- Dihydropyrrolo-Pyridazine/Betaine System Amendra Fernando, Tej B. Shrestha,,2 Yao Liu, 3 Aruni P. Malalasekera,

More information

Xcalibur Library Browser

Xcalibur Library Browser Thermo Xcalibur Library Browser User Guide Creating and Searching Spectral Libraries Software Version 3.0 XCALI-97552 Revision A June 2013 2013 Thermo Fisher Scientific Inc. All rights reserved. Xcalibur

More information

Single Cell Peptide Heterogeneity of Rat Islets of Langerhans

Single Cell Peptide Heterogeneity of Rat Islets of Langerhans Single Cell Peptide Heterogeneity of Rat Islets of Langerhans Erik T. Jansson, Troy J. Comi, Stanislav S. Rubakhin, and Jonathan V. Sweedler* Department of Chemistry and the Beckman Institute for Advanced

More information

ENDF/B-VII.1 versus ENDFB/-VII.0: What s Different?

ENDF/B-VII.1 versus ENDFB/-VII.0: What s Different? LLNL-TR-548633 ENDF/B-VII.1 versus ENDFB/-VII.0: What s Different? by Dermott E. Cullen Lawrence Livermore National Laboratory P.O. Box 808/L-198 Livermore, CA 94550 March 17, 2012 Approved for public

More information

Installation Instructions

Installation Instructions Analyst QS Service Pack 5 (SP5) Release Notes Final Version Analyst QS Service Pack 5 includes all previous improvements released in Analyst QS SP1 through Analyst QS SP4. It addresses a number of issues

More information

Summary of Recent Changes to the AMS Data Acquisition Program (up to Version 4.3)

Summary of Recent Changes to the AMS Data Acquisition Program (up to Version 4.3) Summary of Recent Changes to the AMS Data Acquisition Program (up to Version 4.3) Manjula Canagaratna Aerodyne Research Boulder AMS Users Mini Meeting University of Colorado March 9-10, 2003 Update on

More information

HOW TO PERFORM LC-MS ANNOTATIONS? W4M Core Team 1 «LC-MS ANNOTATION» MODULES IN W4M The «LCMS Annotation» modules allow you to perform: «Adducts» annotation «Chemical» annotation: Meta-engine (Chemspider)

More information

High-accuracy peak picking of proteomics data

High-accuracy peak picking of proteomics data High-accuracy peak picking of proteomics data E. Lange, C. Gröpl, K. Reinert 1, O. kohlbacher 2 and A. Hildebrandt 3 1 Institute of Computer Science, Free University of Berlin 14195 Berlin, Takustr. 9,

More information

Supporting information

Supporting information Supporting information 1S. DECOMP output for the peptide amino-acid decomposition test with monoisotopic mass = 1000 +/- 0.2 # imsdecomp 1.3 # Copyright 2007,2008 Informatics for Mass Spectrometry group

More information

Q Exactive HF-X QuickStart Guide

Q Exactive HF-X QuickStart Guide Q Exactive HF-X QuickStart Guide About this Guide Q Exactive HF-X Tune This Q Exactive HF-X QuickStart Guide gives an introduction on setting up and using the Thermo Scientific Q Exactive HF-X mass spectrometer.

More information

Direct Infusion Mass Spectrometry Processing (DIMaSP) Instructions for use

Direct Infusion Mass Spectrometry Processing (DIMaSP) Instructions for use Direct Infusion Mass Spectrometry Processing (DIMaSP) Instructions for use The following instructions assume the user has a batch of paired sample and blank spectra that have been exported to a comma-separated

More information

HOLIDAY HOME WORK CLASS X ENGLISH

HOLIDAY HOME WORK CLASS X ENGLISH HOLIDAY HOME WORK CLASS X ENGLISH Q1. Prepare a project report on: - Life history and achievements of Shakespeare. (10-12 pages) Q2. Write articles on the following topics: - (i) Conservation of environment

More information

User guide. Using the ALEX 123 framework to identify lipid molecules detected by MALDI-based high-resolution FTMS 1 and ITMS 2 analysis

User guide. Using the ALEX 123 framework to identify lipid molecules detected by MALDI-based high-resolution FTMS 1 and ITMS 2 analysis User guide for Using the ALEX 123 framework to identify lipid molecules detected by MALDI-based high-resolution FTMS 1 and ITMS 2 analysis Used in the publication: Ellis et al. (2018, in review) Version

More information

Finnigan Xcalibur. Getting Productive: Qualitative Analysis. XCALI Revision B March 2006

Finnigan Xcalibur. Getting Productive: Qualitative Analysis. XCALI Revision B March 2006 Finnigan Xcalibur Getting Productive: Qualitative Analysis XCALI-97101 Revision B March 2006 For Research Use Only Not for use in Diagnostic Procedures 2005 2006 Thermo Electron Corporation. All rights

More information

Improved Centroid Peak Detection and Mass Accuracy using a Novel, Fast Data Reconstruction Method

Improved Centroid Peak Detection and Mass Accuracy using a Novel, Fast Data Reconstruction Method Overview Improved Centroid Peak Detection and Mass Accuracy using a Novel, Fast Data Reconstruction Method James A. Ferguson 1, William G. Sawyers 1, Keith A. Waddell 1, Anthony G. Ferrige 2, Robert Alecio

More information

IPR Äspö Hard Rock Laboratory. International Progress Report. TRUE Block Scale project. Summary of chemical data December 2002

IPR Äspö Hard Rock Laboratory. International Progress Report. TRUE Block Scale project. Summary of chemical data December 2002 International Progress Report IPR-03-25 Äspö Hard Rock Laboratory TRUE Block Scale project Summary of chemical data December 2002 Jeanette Carmström SKB April 2003 Svensk Kärnbränslehantering AB Swedish

More information

Experiences from CRYRING diagnostics

Experiences from CRYRING diagnostics Workshop on Low Current, Low Energy Beam Diagnostics November 23-25 th 2009, Groβsachsen, Germany Experiences from CRYRING diagnostics A. Källberg Manne Siegbahn Laboratory Stockholm University Frescativägen

More information

MASPECTRAS Users Guide

MASPECTRAS Users Guide MASPECTRAS Users Guide In this user guide every page and functionality is described in detail. To work with MASPECTRAS it is not necessary to read the whole document, because many things work similar to

More information

S. S. JAIN SUBODH P. G. (Autonomous) COLLEGE, JAIPUR FACULTY OF SCIENCE TIME TABLE B.Sc. Semester- I w.e.f

S. S. JAIN SUBODH P. G. (Autonomous) COLLEGE, JAIPUR FACULTY OF SCIENCE TIME TABLE B.Sc. Semester- I w.e.f AR.N.301 8 A. 8.55A. 4,5,6 M- SG 1-3 M- DG 9 A. 9.55 A. 3,4 PHY FK 1.2 PHY MES 5,6 HND US S. S. JAN SUBODH P. G. (Autonomous) COLLEGE, JAPUR B.Sc. Semester- w.e.f. 18.07.16 10 A. 10.55 A. 5,6 RN 3,4 NJ

More information

Package MSGFplus. April 1, 2019

Package MSGFplus. April 1, 2019 Type Package Title An interface between R and MS-GF+ Version 1.16.1 Date 2017-06-19 Author Thomas Lin Pedersen Package MSGFplus April 1, 2019 Maintainer Thomas Lin Pedersen This package

More information

Supporting Information. Investigating the Nature of Palladium Chain-Walking in the Enantioselective Redox-Relay Heck Reaction of Alkenyl Alcohols

Supporting Information. Investigating the Nature of Palladium Chain-Walking in the Enantioselective Redox-Relay Heck Reaction of Alkenyl Alcohols Supporting Information Investigating the Nature of Palladium Chain-Walking in the Enantioselective Redox-Relay eck Reaction of lkenyl lcohols Margaret J. ilton, 1 Li-Ping Xu, 2 Per-Ola Norrby, 3 Yun-ong

More information

User Manual MarkerView Software User Manual Revision: February, 2010

User Manual MarkerView Software User Manual Revision: February, 2010 User Manual MarkerView 1.2.1 Software User Manual - 1 - Revision: February, 2010 This document is provided to customers who have purchased AB SCIEX equipment to use in the operation of such AB SCIEX equipment.

More information

Corra v2.0 User s Guide

Corra v2.0 User s Guide Corra v2.0 User s Guide Corra is an open source software Licensed under the Apache License, Version 2.0 and it s source code, demo data and this guide can be downloaded at the http://tools.proteomecenter.org/corra/corra.html.

More information

Software Tools for Network Modelling

Software Tools for Network Modelling 6 th International Conference on Applied Informatics Eger, Hungary, January 27 31, 2004. Software Tools for Network Modelling Attila Kuki a, János Sztrik b, Günter Bolch c a Department of Information Technology

More information

Tutorial EN

Tutorial EN Tutorial 8.102.8001EN Metrohm AG CH-9101 Herisau Switzerland Phone +41 71 353 85 85 Fax +41 71 353 89 01 info@metrohm.com www.metrohm.com Tutorial 8.102.8001EN 07.2009 ek Teachware Metrohm AG CH-9101

More information

TitrIC Vario pro. Multi parameter analysis by titration and ion chromatography combined

TitrIC Vario pro. Multi parameter analysis by titration and ion chromatography combined TitrIC Vario pro Multi parameter analysis by titration and ion chromatography combined TitrIC Vario pro the dream team for comprehensive ion analysis 02 Comprehensive analysis of ionic components in liquid

More information

Library. RSC Publishing. a step-by-step guide

Library. RSC Publishing. a step-by-step guide Erika Delbecque Library Section name RSC Publishing a step-by-step guide This guide will take you through searching the RSC Publishing platform, where you can find journal articles and e-books on biology,

More information

Supplementary Figure S1. 19 F NMR spectra of the reaction of 5e with XeF 2 in toluene-d 8.

Supplementary Figure S1. 19 F NMR spectra of the reaction of 5e with XeF 2 in toluene-d 8. Supplementary Figure S1. 19 F NMR spectra of the reaction of 5e with XeF 2 in toluene-d 8. Supplementary Figure S2. 31 P NMR spectra of 5e and the reaction of 5e with XeF 2 in toluene-d 8. Supplementary

More information

Preston Neighbourhood House

Preston Neighbourhood House Preston Neighbourhood House Table of Contents Topic 1 Microsoft Word Basics... 2 Basic Tools... 3 Keyboard Movement Commands and Mouse Techniques... 5 Customising the Quick Access Toolbar... 5 Selection

More information

MTP SmallAnchor Targets BC

MTP SmallAnchor Targets BC Instructions for Use MTP SmallAnchor Targets BC Polished steel targets with hydrophilic sample and calibrant spots surrounded by a hydrophobic barrier for MALDI sample preparation CARE products are designed

More information

Pathway Analysis of Untargeted Metabolomics Data using the MS Peaks to Pathways Module

Pathway Analysis of Untargeted Metabolomics Data using the MS Peaks to Pathways Module Pathway Analysis of Untargeted Metabolomics Data using the MS Peaks to Pathways Module By: Jasmine Chong, Jeff Xia Date: 14/02/2018 The aim of this tutorial is to demonstrate how the MS Peaks to Pathways

More information

Progenesis CoMet User Guide

Progenesis CoMet User Guide Progenesis CoMet User Guide Analysis workflow guidelines for version 1.0 Contents Introduction... 3 How to use this document... 3 How can I analyse my own runs using CoMet?... 3 LC-MS Data used in this

More information

Using I9131 Sodium Combination ISE on 3200I/M

Using I9131 Sodium Combination ISE on 3200I/M Overview Using I9131 Sodium Combination ISE on 3200I/M This document demonstrates how to use I9131 Sodium Combination ISE on 3200I or 3200 M to measure pna or the concentration of [Na + ]. Applied to 3200I

More information

Tutorial 7: Automated Peak Picking in Skyline

Tutorial 7: Automated Peak Picking in Skyline Tutorial 7: Automated Peak Picking in Skyline Skyline now supports the ability to create custom advanced peak picking and scoring models for both selected reaction monitoring (SRM) and data-independent

More information

De Novo Pipeline : Automated identification by De Novo interpretation of MS/MS spectra

De Novo Pipeline : Automated identification by De Novo interpretation of MS/MS spectra De Novo Pipeline : Automated identification by De Novo interpretation of MS/MS spectra Benoit Valot valot@moulon.inra.fr PAPPSO - http://pappso.inra.fr/ 29 October 2010 Abstract The classical method for

More information

SPECTRUM. The world s first fully automated Raman AFM. AFM - confocal Raman - SNOM - TERS AFM KPFM. Raman. AFM-Raman characterization of PS-PVAC

SPECTRUM. The world s first fully automated Raman AFM. AFM - confocal Raman - SNOM - TERS AFM KPFM. Raman. AFM-Raman characterization of PS-PVAC Raman KPFM AFM AFM-Raman characterization of PS-PVAC polymer blend film SPECTRUM The world s first fully automated Raman AFM AFM - confocal Raman - SNOM - TERS The first fully integrated & automated AFM

More information

Package HiResTEC. August 7, 2018

Package HiResTEC. August 7, 2018 Type Package Package HiResTEC August 7, 2018 Title Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data Version 0.54 Date 2018-08-07 Maintainer Jan Lisec Identifying labeled

More information

Searching and ranking similar clusters of polyhedra in inorganic crystal structures

Searching and ranking similar clusters of polyhedra in inorganic crystal structures Searching and ranking similar clusters of polyhedra in inorganic crystal structures Hans-Joachim Klein Institut f. Informatik Christian-Albrechts-Universität Kiel Germany 2 Definition: A crystal is an

More information

PROJECT Elmarknadshubb DATE DRAFT VERSION /1263. Elmarknadshubb. BRS-SE-611 Register meter value 1/12

PROJECT Elmarknadshubb DATE DRAFT VERSION /1263. Elmarknadshubb. BRS-SE-611 Register meter value 1/12 PROJECT Elmarknadshubb DATE 2018-01-11 DRAFT VERSION ENGLISH DRAFT VERSION ÄRENDENUMMER 1. 0 2015/1263 Elmarknadshubb BRS-SE-611 Register meter value 1/12 About this document Updates Release Change note

More information

Depth analysis for laminated film by confocal Raman mapping

Depth analysis for laminated film by confocal Raman mapping Newest modular 3D Imaging Raman Microspectroscopy System Simple operation and low cost with all the basic features of our top of the line system. Structural images of transparent samples (plastic, film,

More information

De Novo Peptide Identification

De Novo Peptide Identification De Novo Peptide Identification When a suitable sequence database is not available for your sample of interest, identification of your acquired fragmentation mass spectra becomes quite difficult. Indeed,

More information

Supporting Information. for. TEMPO-derived spin labels linked to the nucleobases. adenine and cytosine for probing local structural

Supporting Information. for. TEMPO-derived spin labels linked to the nucleobases. adenine and cytosine for probing local structural Supporting Information for TEMPO-derived spin labels linked to the nucleobases adenine and cytosine for probing local structural perturbations in DNA by EPR spectroscopy Dnyaneshwar B. Gophane and Snorri

More information

How to Create a Substance Answer Set

How to Create a Substance Answer Set How to Create a Substance Answer Set Select among five search techniques to find substances Substances can be described by multiple names or other characteristics, so SciFinder gives you the flexibility

More information

FT-ICR MS in the analysis of IgA Nephropathy

FT-ICR MS in the analysis of IgA Nephropathy FT-ICR MS in the analysis of IgA Nephropathy Matthew B. Renfrow March 7, 007 Finnigan LTQ FT-ICR Mass Spectrometer Ion Trap based Fourier Transform-Ion Cyclotron Mass Spectrometer FT-ICR @ LC timescale

More information

mmass 3.2 User s Guide written by Martin Strohalm version 1.3

mmass 3.2 User s Guide written by Martin Strohalm version 1.3 mmass 3.2 User s Guide written by Martin Strohalm version 1.3 Contents 1. Preface... 5 1.1. Motivation... 5 1.2. Authors... 5 1.3. Typographical Conventions... 6 1.4. Technicalities... 6 1.5. License...

More information

We are painfully aware that we don't have a good, introductory tutorial for Mascot on our web site. Its something that has come up in discussions

We are painfully aware that we don't have a good, introductory tutorial for Mascot on our web site. Its something that has come up in discussions We are painfully aware that we don't have a good, introductory tutorial for Mascot on our web site. Its something that has come up in discussions many times, and we always resolve to do something but then

More information

Sat 13:45 AMS Upgrades

Sat 13:45 AMS Upgrades Sat 13:45 AMS Upgrades eptof - Efficient Particle Time-of-Flight ADQ1600, Custom data acquisition card PM2.5 Lens Capture vaporizer Auto tuning software for mass spectrometer Efficient Particle Time-of-Flight

More information

Package RMassBank. October 9, 2013

Package RMassBank. October 9, 2013 Package RMassBank October 9, 2013 Type Package Title Workflow to process tandem MS files and build MassBank records Version 1.2.1 Author Michael Stravs, Emma Schymanski Maintainer Michael Stravs, Emma

More information

BIOINF 4399B Computational Proteomics and Metabolomics

BIOINF 4399B Computational Proteomics and Metabolomics BIOINF 4399B Computational Proteomics and Metabolomics Sven Nahnsen WS 13/14 6. Quantification Part II Overview Label-free quantification Definition of features Feature finding on centroided data Absolute

More information

Overview of updates to PAG Activities 1 st February 2016

Overview of updates to PAG Activities 1 st February 2016 Overview of updates to PAG Activities 1 st February 2016 Please find below a centralised copy of the sections of the Chemistry PAG Activities sheets as a quick reference to current versions and the changes

More information

Table S1 Comparison of CypA observed Bragg data vs. calculated from Normal Modes.

Table S1 Comparison of CypA observed Bragg data vs. calculated from Normal Modes. Table S1 Comparison of CypA observed Bragg data vs. calculated from Normal Modes. Resolution (Å) R-factor CC 44.560-11.070 0.5713 0.4144 11.070-8.698 0.3325 0.6957 8.697-6.834 0.2987 0.7324 6.831-5.369

More information

Agilent MassHunter Metabolite ID Software. Installation and Getting Started Guide

Agilent MassHunter Metabolite ID Software. Installation and Getting Started Guide Agilent MassHunter Metabolite ID Software Installation and Getting Started Guide Notices Agilent Technologies, Inc. 2011 No part of this manual may be reproduced in any form or by any means (including

More information

Supporting information for the manuscript

Supporting information for the manuscript Electronic Supplementary Material (ESI) for Chemical Science. This journal is The Royal Society of Chemistry 2019 Supporting information for the manuscript Facile N-functionalization and strong magnetic

More information

MALDI Software Users Guide (simplified version)

MALDI Software Users Guide (simplified version) MALDI Software Users Guide (simplified version) Central Analytical Lab Ekeley E266 The Acquisition program is called Voyager Control Panel. Once you shoot your sample and determine it looks good, you transfer

More information

a ae (Chemi m cal bon o d)

a ae (Chemi m cal bon o d) a ae (Chemical bond) å å å a a ooo i o i a ao e e e a ao a a å å å å o æ e и å o e u и 2 ae o æ e и å o e u ( a å o u å o ooo ) æ a ao a a ao e e a a ooo i æ e и a å o e u æ a a o e æ a å a æ o o å å å

More information

French Creek Software, Inc. Quick Start Guide

French Creek Software, Inc. Quick Start Guide French Creek Software, Inc Quick Start Guide Inside This Guide Section 1: Setup - Overview & Install 4 Software Overview System Requirements 5 Installation Section 2: Getting Around - Get to Modeling 7

More information

HiQ sil TM HPLC Columns

HiQ sil TM HPLC Columns www.kromatek.co.uk KYA Technologies of Japan KYA Technologies Corporation, Tokyo, Japan established in 1998 to develop a range of HPLC products. The latest product HiQ sil HS is a high performance silica

More information

Chromeleon / MSQ Plus Operator s Guide Document No Revision 03 October 2009

Chromeleon / MSQ Plus Operator s Guide Document No Revision 03 October 2009 MSQ Plus Chromeleon / MSQ Plus Operator s Guide Document No. 065322 Revision 03 October 2009 Chromeleon / MSQ Plus Operator s Guide 2009 by Dionex Corporation All rights reserved worldwide. Printed in

More information