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1 General Instructor: B. Hyle Park (MSE 243 / Bourns B207, hylepark@engr.ucr.edu) Teaching assistant: Junchao Wang (MSE 217, jwang071@ucr.edu) Reader: Michael Xiong (MSE 217, zhehao.xiong@ .ucr.edu)
2 Course BIEN 142 Introductory Biomedical Optical Imaging, 4 units, Lecture, 3 hours; discussion, 1 hour. Prerequisite(s): PHYS 040C and MATH 010B; or consent of instructor. Examines fundamental theory and basic design of biomedical optical imaging systems. Topics include a basic understanding of the working principles of optical components, diagnostic light-tissue interaction, and design of imaging systems to exploit the interaction of light with biological phenomena. 1. Basic understanding of principles of optical image acquisition, interpretation, and analysis
3 Course BIEN 142 Introductory Biomedical Optical Imaging, 4 units, Lecture, 3 hours; discussion, 1 hour. Prerequisite(s): PHYS 040C and MATH 010B; or consent of instructor. Examines fundamental theory and basic design of biomedical optical imaging systems. Topics include a basic understanding of the working principles of optical components, diagnostic light-tissue interaction, and design of imaging systems to exploit the interaction of light with biological phenomena. 1. Basic understanding of principles of optical image acquisition, interpretation, and analysis 2. MATLAB! 3. Gain familiarity with current optical imaging technology
4 Deliverables Homework HW01 (10%) General conduct (20%) Late homework will graded but will not count toward your grade HW02 (10%) HW03 (10%) HW04 (10%) Midterm (25%) Final (25%)
5 Schedule Sunday Monday Tuesday Wednesday Thursday Friday Saturday Week 0 Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 1/8/2017 1/9/2017 1/10/2017 1/11/2017 1/12/2017 1/13/2017 1/14/2017 LEC 01: 4:10-5pm SURGE 172 LEC 02: 4:10-5pm SURGE 172 LEC 03: 4:10-5pm SURGE 172 Overview Properties of light Light manipulation I 1/15/2017 1/16/2017 holiday 1/17/2017 1/18/2017 1/19/2017 1/20/2017 1/21/2017 LEC 04: 4:10-5pm SURGE 172 LEC 05: 4:10-5pm SURGE 172 Light manipulation II Light-matter interaction HW1 assigned 1/22/2017 1/23/2017 1/24/2017 1/25/2017 1/26/2017 1/27/2017 1/28/2017 DIS 01: 3:10-4pm SURGE 173 LEC 07: 4:10-5pm SURGE 172 Extract quantitiative parameters HW1 due LEC 06: 4:10-5pm SURGE 172 Single lens cameras LEC 08: 4:10-5pm SURGE 172 Basic image formation Image analysis I 1/29/2017 1/30/2017 away 1/31/2017 2/1/2017 away 2/2/2017 2/3/2017 2/4/2017 DIS 02: 3:10-4pm SURGE 173 LEC 09: 4:10-5pm SURGE 172 HW2 assigned Microsope design 2/5/2017 2/6/2017 2/7/2017 2/8/2017 2/9/2017 2/10/2017 2/11/2017 DIS 03: 3:10-4pm SURGE 173 LEC 11: 4:10-5pm SURGE 172 HW2 due LEC 10: 4:10-5pm SURGE 172 Image analysis II LEC 12: 4:10-5pm SURGE 172 System characterization Review 2/12/2017 2/13/2017 2/14/2017 2/15/2017 2/16/2017 2/17/2017 2/18/2017 Midterm: 3:10-4pm SURGE 173 LEC 13: 4:10-5pm SURGE 172 LEC 14: 4:10-5pm SURGE 172 Midterm: 4:10-5pm SURGE 172 HW3 assigned Confocal microscopy Fluorescence microscopy 2/19/2017 2/20/2017 holiday 2/21/2017 2/22/2017 2/23/2017 2/24/2017 2/25/2017 LEC 15: 4:10-5pm SURGE 172 LEC 16: 4:10-5pm SURGE 172 Multiphoton microscopy Spectroscopy
6 Schedule Week 4 Week 5 Week 6 Week 7 Week 8 Week 9 Week 10 Finals Sunday Monday Tuesday Wednesday Thursday Friday Saturday 1/29/2017 1/30/2017 away 1/31/2017 2/1/2017 away 2/2/2017 2/3/2017 2/4/2017 DIS 02: 3:10-4pm SURGE 173 LEC 09: 4:10-5pm SURGE 172 HW2 assigned Microsope design 2/5/2017 2/6/2017 2/7/2017 2/8/2017 2/9/2017 2/10/2017 2/11/2017 DIS 03: 3:10-4pm SURGE 173 LEC 11: 4:10-5pm SURGE 172 HW2 due LEC 10: 4:10-5pm SURGE 172 Image analysis II LEC 12: 4:10-5pm SURGE 172 System characterization Review 2/12/2017 2/13/2017 2/14/2017 2/15/2017 2/16/2017 2/17/2017 2/18/2017 Midterm: 3:10-4pm SURGE 173 LEC 13: 4:10-5pm SURGE 172 LEC 14: 4:10-5pm SURGE 172 Midterm: 4:10-5pm SURGE 172 HW3 assigned Confocal microscopy Fluorescence microscopy 2/19/2017 2/20/2017 holiday 2/21/2017 2/22/2017 2/23/2017 2/24/2017 2/25/2017 LEC 15: 4:10-5pm SURGE 172 LEC 16: 4:10-5pm SURGE 172 Multiphoton microscopy Spectroscopy 2/26/2017 2/27/2017 2/28/2017 3/1/2017 3/2/2017 3/3/2017 3/4/2017 DIS 05: 3:10-4pm SURGE 173 LEC 18: 4:10-5pm SURGE 172 HW3 due LEC 17: 4:10-5pm SURGE 172 Time-domain OCT LEC 19: 4:10-5pm SURGE 172 Fiber optics Fourier-domain OCT 3/5/2017 3/6/2017 3/7/2017 3/8/2017 3/9/2017 3/10/2017 3/11/2017 DIS 06: 3:10-4pm SURGE 173 LEC 21: 4:10-5pm SURGE 172 LEC 22: 4:10-5pm SURGE 172 LEC 20: 4:10-5pm SURGE 172 Flow imaging Polarization imaging HW4 assigned; Endoscopy 3/12/2017 3/13/2017 3/14/2017 3/15/2017 3/16/2017 3/17/2017 3/18/2017 DIS 07: 3:10-4pm SURGE 173 LEC 24: 4:10-5pm SURGE 172 HW4 due LEC 23: 4:10-5pm SURGE 172 Research systems LEC 25: 4:10-5pm SURGE 172 Clinical systems Review 3/19/2017 3/20/2017 3/21/2017 3/22/2017 3/23/2017 3/24/2017 3/25/2017 Final: 7-10pm SURGE 172
7 Office hours Tuesdays, 11am-noon, MSE 243
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