Plutof Bridge from Data Management to the Reporting (=Publishing) Urmas Kõljalg - Allan Zirk - Kessy Abarenkov University of Tartu

Transcription

1 Plutof Bridge from Data Management to the Reporting (=Publishing) Urmas Kõljalg - Allan Zirk - Kessy Abarenkov University of Tartu

2 Open Data & FAIR DATA Findable, Accessible, Interoperable and Re-usable

3 Why a Fitness Check? Because environmental monitoring and reporting can be: 1) not always used to the fullest possible extent or used very late so that the inform 2) ineffective because the same information and data are asked several times or a 3) creating sometimes unnecessary extra administrative efforts without clear benef 4) organised in a way that is not efficient and does not use information technology

4 Common way to the Open Data Often this mean no FAIR Data because data are stored in repositories as files in different formats. Additional effort needed to recover data from files. 1 Datasets are analysed with great variety of software. Data must be usually converted first into suitable format. Analysing datasets 3 Some journals ask to lodge datasets in public repository like DataONE, etc. In this case again files in different formats are uploaded. Files and metadata are published with DOI. Archiving Creating datasets Datasets are created with spreadsheets, local database, etc. 2 Publishing paper Results of the analyses are presented in the paper. Datasets are sometimes attached as a Supplementary material. Often it means that datasets are in different file formats and are not machine readable. But they are Open Data s.l. 4 Designed by PresentationGo

5 PlutoF - online data management platform which secure FAIR data Full data lifecycle from Data Management Plan to the publishing and archiving your datasets

6 Data Lifecycle with PlutoF Registration and login at DMP Data Management Plan describes how data are collected, managed and stored during the research project. Compiling DMP with PlutoF is simple because it is a logical part of your project description and associated datasets. Archive PlutoF serves as a archive as well because you may store your datasets here for the unlimited time. Your datasets can be stored as such or they can be published with DOI. Dataset without DOI can be managed and changed if needed in future. Publish There are several ways you may publish your data via PlutoF. You may export data in different formats and publish as a files. You may ask DOI for your dataset or publish data in GBIF. Then DOI is issued by GBIF. Or you can send your data directly to the Pensoft data journal. Archive Publish DMP PlutoF Share Create Manage & Curate Create Datasets are created in PlutoF either by importing data with template csv files or by uploading data manually data via online workbench. Mobile devices can be used for the fast and simple data upload via application Legulus ( ) Manage/Curate Data management and curation is carried in online workbench. sit amet, at pede luctus vel gravida, nonummy massa rutrum lorem volutpat, a nunc ornare, etiam eleifend, fusce id mauris phasellus fusce ultriciesi. Share In PlutoF you can share your datasets with any other user or workgroup. You can give simple access to your data or even right to edit your data. In this way you may collaborate with other scientists, students and citizen scientists. Designed by PresentationGo

7 Data Management and Publishing Platform

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9 Reporting is publishing Reporting data is also publishing Everybody who reports upstairs - correct, publishing too

10 What you need in upstairs? ed manageable Fair Data because you need to report furth

11 Example Global Dataset of Oligochaete Dataset developed by Tarmo Timm

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14 Dataset is downloaded more than 600 times during last four month Timm T, Abarenkov K (2017). World distribution of the aquatic Oligochaeta. Version 1.9. PlutoF. Occurrence Dataset accessed via GBIF.org on

15 PlutoF Data Management and Publishing Platform Statistics

16 Nearly DOIs (Digital Object Identifier) released. Second largest data center in the world in number of released DOIs (DataCite consortium) PlutoF statistics

17 Scientists and Citizen Scientists from 89 countries made registration and became users of the PlutoF PlutoF statistics

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20 EBV (Essential Biodiversity Variables)

21 Thank you! Kessy Abarenkov Allan Zirk