How Data Volume Affects Spark Based Data Analytics on a Scale-up Server

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Alaina O’Connor’
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1 How Data Volume Affects Spark Based Data Analytics on a Scale-up Server Ahsan Javed Awan EMJD-DC (KTH-UPC) ( Mats Brorsson(KTH), Vladimir Vlassov(KTH) and Eduard Ayguade(UPC and BSC), 1

2 Why should we care about architecture support? Data Growing Faster Than Technology 2 *Source: SGI

3 Cont... Hadoop, Spark, Flink, etc.. Phoenix ++, Metis, Ostrich, etc.. Our OurFocus Focus Improve the node level performance through architecture support 3 *Source:

4 Conti... A mismatch between the characteristics of emerging workloads and the underlying hardware. M. Ferdman et-al, Clearing the clouds: A study of emerging scale-out workloads on modern hardware, in ASPLOS Z. Jia, et-al Characterizing data analysis workloads in data centers, in IISWC Z. Jia et-al, Characterizing and subsetting big data workloads, in IISWC 2014 A. Yasin et-al, Deep-dive analysis of the data analytics workload in cloudsuite, in IISWC T. Jiang, et-al, Understanding the behavior of in-memory computing workloads, in IISWC 2014 Existing studies lack quantitative analysis of bottlenecks of scale-out frameworks on single-node 4

5 Which Scale-out Framework? Progress Meeting [Picture Courtesy: Amir H. Payberah] 5

6 What are the major bottlenecks?? Our Approach Performance characterization of in-memory data analytics on a modern cloud server, in 5th International IEEE Conference on Big Data and Cloud Computing, 2015 (Best Paper Award). How Data Volume Affects Spark Based Data Analytics on a Scale-up Server Focus of this talk 6

7 What are the remaining questions?? Our Approach Do Spark based data analytics benefit from using scale-up servers? How severe is the impact of garbage collection on performance of Spark based data analytics? Is file I/O detrimental to Spark based data analytics performance? How does data size affect the micro-architecture performance of Spark based data analytics? 7

8 What are the contributions?? Our Approach We evaluate the impact of data volume on the performance of Spark based data analytics running on a scale-up server. We quantify the limitations of using Spark on a scale-up server with large volumes of data. We quantify the variations in micro-architectural performance of applications across different data volumes. 8

9 Methodology Our Approach Use a subset of benchmarks from BigDataBench Use Big Data Generator Suite (BDGS), to generate synthetic datasets of 6 GB, 12 GB and 24 GB. Configure Spark in local mode and tune its internal Parameters Rely on GC logs to collect garbage collection times. Use Spark logs to gather execution time of benchmarks. Use Concurrency Analysis in Intel Vtune to collect wait time and CPU time of executor pool threads Use General Micro-architectural Exploration in Intel Vtune to analyze impact of data volume on micro-architecture characteristics. 9

10 What are the characteristics of benchmarks? Our Approach 10

11 System Details Our Hardware Configuration 11

12 Machine Details Our Hardware Configuration Hyper Threading and Turbo-boost are disabled Hyper Threading and Turbo-boost are disabled 12

13 Software Parameters Our Approach 13

14 Do Spark based data analytics benefit from using larger scale-up servers? Spark applications do not benefit significantly by using more than 12-core executors 14

15 Is GC detrimental to scalability of Spark applications? The proportion of GC time increases with the number of cores 15

16 Does performance remain consistent as we enlarge the data size? Decrease in Data processed per second ranges from 11% to 93% ( Parallel Scavenge) 16

17 Does the choice of Garbage Collector impact the data processing capability of the system?? Improvement in DPS ranges from 1.4x to 3.7x on average in Parallel Scavenge as compared to G1 17

18 How does GC affect data processing capability of the system?? GC time does not scale linearly with data size. 18

19 How does CPU utilization scale with data volume? CPU Utilization decreases with increase in input data size 19

20 Is File I/O detrimental to performance? Fraction of file I/O increases by 6x, 18x and 25x for Word Count, Naive Bayes and Sort respectively when input data is increased by 4x 20

21 How does data size affects micro-architectural performance? 5 to 10 % better instruction retirement as we enlarge the data size 21

22 Cont.. Execution units inside the core exhibit improved utilization at larger data sets 22

23 Cont.. Increase in L1 Bound Stalls implies better utilization of L1 Caches 23

24 Cont.. Spark benchmarks exhibit reduced memory bandwidth utilization 24

25 Key Findings Spark workloads do not benefit significantly from executors with more than 12 cores. The performance of Spark workloads degrades with large volumes of data due to substantial increase in garbage collection and file I/O time. With out any tuning, Parallel Scavenge garbage collection scheme outperforms Concurrent Mark Sweep and G1 garbage collectors for Spark workloads. Spark workloads exhibit improved instruction retirement due to lower L1 cache misses and better utilization of functional units inside cores at large volumes of data. Memory bandwidth utilization of Spark benchmarks decreases with large volumes of data and is 3x lower than the available offchip bandwidth on our test machine 25

26 Future Directions NUMA Aware Task Scheduling Cache Aware Transformations Exploiting Processing In Memory Architectures HW/SW Data Prefectching Rethinking Memory Architectures 26

Workload Characterization and Optimization of TPC-H Queries on Apache Spark

Workload Characterization and Optimization of TPC-H Queries on Apache Spark Tatsuhiro Chiba and Tamiya Onodera IBM Research - Tokyo April. 17-19, 216 IEEE ISPASS 216 @ Uppsala, Sweden Overview IBM Research