Software tools for igemers: BioBrick / Past Project Search & Tutorials

Transcription

1 Software tools for igemers: BioBrick / Past Project Search & Tutorials

2 Background In igem... Important part is: Think & decide your project igem Start to Finish

3 Background Lots of time is spent on finding information required for Think & decide your project part Such as... Learning about essential igem concepts Searching past projects relevant to yours Deciding what BioBrick parts to use

4 Our Software - More efficiency! Learning about essential igem concepts Tutorials Obtain knowledge easily! Search past projects relevant to yours Decide what BioBrick parts to use New Search System Save your time & labor! Web base Easy & speedy to use!

5 Our Software Tutorial BioBrick Puzzle Search Past Project Search Gene Network Game BioBrick Search

6 Our Software Tutorial BioBrick Puzzle Search Past Project Search Gene Network Game BioBrick Search

7 Tutorial - Concept Target igem beginners Subject BioBrick Standard Assembly Dynamics of Genetic Network

8 Tutorial - Background Beginners Many of igem participants are new-comers Spend a lot of time learning about igem BioBrick / Genetic Network All teams must learn No adequate educational materials

9 Tutorial - Feature Interactive Game Learning efficiently Keeping users interested Contents relevant to igem

10 Let's watch the Video: BioBrick Puzzle & Gene Network game

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13 Tutorial - Conclusion BioBrick Puzzle Learn BioBrick Standard Assembly Gene Network Game Learn genetic networks Understand & design constructs Acquire basic skills to conduct modeling Beginners can learn proper knowledge efficiently

14 Our Software Tutorial BioBrick Puzzle Search Past Project Search Gene Network Game BioBrick Search

15 Our Software Tutorial BioBrick Puzzle Search Past Project Search Gene Network Game BioBrick Search

16 Past Project Search - Background Past team information is scattered Any of these pages do not contain enough information These pages are divided by years

17 Past Project Search - Features Search across multiple years Integration of scattered information Title, Abstract, School info, Presentation materials... Filtering by Track, Medal, Year, Award & Region Simple & user-friendly interface

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19 Past Project Search - Conclusion Improved the accessibility to past igem teams data Across multiple years Displayed all at once Can be narrowed down as necessary Likely to be useful for igemers studying previous researches Any people who interested in igem

20 Our Software Tutorial BioBrick Puzzle Search Past Project Search Gene Network Game BioBrick Search

21 BioBrick Search - Introduction BioBrick Search is a novel BioBrick Search tool provides more efficiency and reliability

22 BioBrick Search - Background Conventional Search at partsregistry.org Not very useful Problems we spotted: Results are not sorted by reliability or relevance Information given in the result list is insufficient TOKYO S O F T W A R E

23 BioBrick Search - Background Conventional Search at partsregistry.org Not very useful Problems we spotted: Results are not sorted by reliability or relevance Information given in the result list is insufficient TOKYO S O F T W A R E

24 BioBrick Search - Video

25 BioBrick Search - Video

26 BioBrick Search - Collaboration Publicly available since this August Made a community post at igem official page Accessed from 16 different countries Received favorable responses We successfully found the appropriate parts from their functions We took into account the "reliability" score to determine which BioBrick parts to use Made improvements based on feedbacks from users

27 BioBrick Search - Collaboration Publicly available since this August Made a community post at igem official page Accessed from 16 different countries Received favorable responses We successfully found the appropriate parts from their functions We took into account the "reliability" score to determine which BioBrick parts to use Made improvements based on feedbacks from users Search history at the top of the page

28 BioBrick Search - Collaboration Publicly available since this August Made a community post at igem official page Accessed from 16 different countries Received favorable responses We successfully found the appropriate parts from their functions We took into account the "reliability" score to determine which BioBrick parts to use Made improvements based on feedbacks from users Search history at the top of the page Direct link to the partsregistry.org wiki page

29 Our Software Tutorial BioBrick Puzzle Search Past Project Search Gene Network Game BioBrick Search

30 Attributions