Tools for Researchers

Transcription

1 University of Miami Scholarly Repository Faculty Research, Publications, and Presentations Department of Health Informatics Tools for Researchers Carmen Bou-Crick M.S.L.S. University of Miami, Zsuzsanna Nemeth M.S.L.S. University of Miami, Recommended Citation Bou-Crick, Carmen M.S.L.S. and Nemeth, Zsuzsanna M.S.L.S., "Tools for Researchers" (2015). Faculty Research, Publications, and Presentations This Article is brought to you for free and open access by the Department of Health Informatics at Scholarly Repository. It has been accepted for inclusion in Faculty Research, Publications, and Presentations by an authorized administrator of Scholarly Repository. For more information, please contact

2 Tools for Researchers Information Resources Available at University of Miami Carmen Bou-Crick, M.S.L.S., AHIP Librarian Assistant Professor & Head, Reference & Education and Zsuzsanna Nemeth, M.S.L.S. Librarian Assistant Professor & Reference & Research Liaison 2015

3 Class Objectives: Upon completion of this lecture, you will be able to: Review Calder Library Website & Resource Guide for Researchers Use online databases for your research (NIH Reporter, ClinicalTrials.gov, PubMed, Embase, Scopus). Find who has cited you and your publishing productivity (h-index) in Scopus. Find collaborators with SciVal Experts/SciVal Pure. Organize your citations and create bibliographies with RefWorks, EndNote, or Mendeley. Identify journals in which to publish using Journal Citation Reports and NIH Public Access website.

4 Forms BioMed Register At Calder To Register for classes

5 To access Resource Guide for Researchers

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7 Online Databases NIH RePORTER Clinical Trials.gov PubMed/MEDLINE/MyNCBI Embase Scopus

8 NIH RePORTER SAMPLE QUERY: Organization: UM (Lookup) Text Search: pediatric [AND] HIV Infections

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11 You may also Browse NIH by Center or Institute

12 Use Matchmaker to enter a topic and Search for matching terms and concepts

13 Search for Pediatric Pulmonary

14 Sorted by FY

15 Online Databases NIH RePORTER Clinical Trials.gov PubMed/MEDLINE/MyNCBI Embase Scopus

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17 Click on title to see more

18 Study Results are posted (if there are results available)

19 Other ways of finding studies By Topic, on a map, etc.

20 Online Databases NIH RePORTER Clinical Trials.gov PubMed/MEDLINE/MyNCBI Embase Scopus

21 PubMed Access: Calder Home Page, e-databases, or PubMed.gov Textbox to Enter terms Sign in Tutorials Clinical Queries

22 A quick look at Clinical Queries Medical Genetics Categories: *Etiology *Diagnosis *Therapy *Prognosis *Clinical Prediction Guides Systematic Reviews

23 FILTERS APPLIED TO CLINICAL QUERIES PT &/or keywords: Clinical Trial OR Randomized Controlled Trial Sensitiv* OR Sensitivity and Specificity OR Diagnos* Risk* OR Cohort Studies Incidence OR mortality OR follow-up studies OR cohort Predict* OR predictive Value of tests OR scores OR scoring system

24 PICO SEARCH (Turning Research into Practice/TRIP dbase)

25 Another Resource for EBM citations: Cochrane Library

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27 PubMed: MyNCBI Sign in

28 MyNCBI account Researchers can sign in at the NIH Login w/era Commons info Sign in if already registered New Users: Click Register for an NCBI account

29 Enter your query terms and click Search SIMPLE KEYWORD SEARCH Shows you are signed in

30 Simple Keyword Search HIV malaria Africa PubMed interprets this as: HIV AND malaria AND Africa OTHER related searches could be: (HIV Infections) AND malaria AND Africa

31 Link to full text

32 Scroll down to Read in HTML format Look For PDF To Print

33 Filters: Article types Dates Humans English AIDS

34 Send to *File *Collections *Citation Manager *Clipboard * *My Bibliog

35 TO SAVE A SEARCH AND CREATE ALERTS

36 Indicate how often you want to receive the updates and how many Click Save when done

37 Saved Search In MyNCBI

38 Other options in MyNCBI NOTE: Enter your publications in this section

39 RECENT ACTIVITY The system remembers your searches

40 Collections of articles created by you

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42 Manage Filters: LinkOut to access our journal subscriptions/full-text

43 SciENcv/Biosketch

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46 To learn more, click on: About

47 Learn more about PubMed register in one of our Classes PubMed Basics PubMed Advanced Registration at:

48 Online Databases NIH RePORTER Clinical Trials.gov PubMed/MEDLINE/MyNCBI EMBASE Scopus

49 Searching in Embase For a simple keyword search: Enter your terms in the text box Sample search: For adult male and female asthma patients, what are the cardiac adverse effects of beta agonists?

50 Keyword search: asthma AND cardiac adverse effects AND beta agonists (38 results)

51 Using controlled vocabulary: Emtree 1. Click on Browse and select Search Emtree

52 Enter term (beta agonists) and browse. Select term

53 Click on Take this query to Drug Search

54 Under Drug Subheadings, select Adverse Drug Reaction then click Search 3 1 2

55 This is a search for beta adrenergic receptor

56 Now search for cardiac disease; first go to Emtree

57 Click on Take this query

58 From Disease Subheadings, select side effect and Search 1 3 2

59 Follow the same steps to search for Asthma in Emtree: 3 1 2

60 Combine searches using And

61 Managing Results: View, Print, Export, , Add to Clipboard Apply filters View fulltext

62 Full-text

63 Online Databases NIH RePORTER Clinical Trials.gov PubMed/MEDLINE/MyNCBI Embase Scopus

64 Enter keywords Types of searches Limit to Document Types Dates

65 Refine your search Recent articles are in Press

66 SORT ON CITED BY COUNTS Click on Title to see full-text

67 Link to publisher Options Cited by

68 Outline Download PDF Scroll down to read article Enlarge Figures & Tables

69 AUTHOR SEARCH: FRENK J Click on name to see profile Check affiliation

70 Analyze Author Output View citation overview View H-graph

71 Author Output Analysis Graph

72 h-index: Based upon number of docs & # of citations

73 Citations by year

74 List of publications sorted by number of times cited

75 Select citations and send to: Mendeley, Refworks, EndNote, etc.

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77 Finding Collaborators: SciVal Experts/SciVal Pure Search options By department

78 Faculty List

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80 Searching by faculty name

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82 Tools for organizing your citations: Calder Library provides support for: RefWorks EndNote Mendeley

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84 NIH PUBLIC ACCESS POLICY COMPLIANCE Ensures free access to published results of NIH-funded research Requires manuscript submission to PubMed Central (PMC) within 12 months of publication Helps advance science by communicating results more quickly Ultimately will improve human health

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86 FOR ADDITIONAL INFORMATION PLEASE VISIT SITES LISTED BELOW Calder Library s NIH Public Access Policy Digest Official NIH Public Access Website NIH Glossary and FAQ Identify Submission Method and List of Journals

87 QUOSA Articles (PDF) retrieved Search in PubMed

88 Web of Science & Journal Citation Reports

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91 Will add this PPT soon!

92 Tutorials & Lynda.com

93 Learn more about these Databases by attending a class or requesting an individual session: 2.html

94 For Posters, Brochures, and Photography: BIOMED

95 In conclusion, we were able to review the following Tools for Researchers: The NIH Reporter & ClinicalTrials.gov PubMed/MEDLINE/MyNCBI/Clinical Queries TRIP/PICO, Embase, Scopus, & SciVal Experts Citation Managers (EndNote, RefWorks, Mendeley) NIH Public Access Policy Compliance Additional Resources (QUOSA, Web of Science/Journal Citation Reports, Scholarly Repository, Tutorials, Training registration, BioMed)

96 Thank YOU! Please do not hesitate to contact us at: or Carmen Bou-Crick, M.S.L.S., AHIP Head, Reference and Education Department Zsuzsanna Nemeth, M.S.L.S. Reference Librarian and Research Liaison The Louis Calder Memorial Library