Rutgers Discovery Informatics Institute (RDI2)
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1 Rutgers Discovery Informatics Institute (RDI2) Manish Parashar h+p://rdi2.rutgers.edu Modern Science & Society Transformed by Compute & Data The era of Extreme Compute and Big Data New paradigms and prac3ces in science and engineering Inherently mul3- disciplinary Data- driven, data and compute- intensive Collabora3ve (university, na3onal, global) 1
2 RDI2 The Fourth Paradigm 1. Empirical + experimental 2. Theore3cal 3. Computa3onal 4. Data- Intensive Jim Gray Each augments, vs. supplants, its predecessors another arrow in the quiver Credit: Ed Lazowska, Univ. of WA RDI2 Data-driven Discovery in Science Nearly every field of discovery is transitioning from data poor to data rich Oceanography: OOI Astronomy: LSST Physics: LHC Biology: Sequencing Sociology: The Web Neuroscience: EEG, fmri Economics: POS terminals Credit: Ed Lazowska, Univ. of WA 2
3 Rutgers Discovery Informatics Institute ( ) Driving Innovation through Advanced Informatics Institute for Advanced Computation & Data ü A university-wide, multidisciplinary resource for CDS&E research ü Fundamentally integrates research, education, ACI and industry partnerships to address core computational & Big Data grand challenges ü Broadens industry and academic access to state-of-the-art research computing technology and expertise ü Provide Rutgers, NJ and national leadership in Big Data and ACI Key Programmatic Areas Multidisciplinary Research Advanced Cyberinfrastructure Industry Partnerships Education & Training 3
4 Key Focus Areas Education and Outreach D. Silver (SOE) Medical & Health Informatics D. Foran (RUCINJ) Earth & Environmental Sciences D. Bhattacharya (SEBS) Research Cyberinfrastructure T. Nguyen (SAS) Computing & Information Systems M. Lesk (SCI) Physical & Life Sciences H. Berman (SAS) Multidisciplinary 4
5 Some ongoing projects Accelerating Human Genome Exploration: Fast method for population assignment based on Ancestry Informative Markers (Rutgers Cell and DNA Repository & Human Genetics Institute) Hunting for Cancer Cells: Enabling near real-time image processing for cancer diagnostics (Cancer Institute of New Jersey) Unveiling Chromatin Organization: Accelerating simulations of nucleosome-decorated DNA (Proteomics Institute) Enabling Functional Metagenomics: Faster method to compare millions of proteins (School of Environmental Biology) Understanding Fluid Flow: Discovering new ways to engineer fluid streams (Iowa State University) Big Data for Supply Chain Management & Optimization (STTR with Optimal Solutions, Inc.). Rutgers Office of Advanced Research Computing (OARC) Strategic planning in advanced computing and cyberinfrastructure New Jersey Big Data Alliance (NJBDA) Statewide leadership in Big Data Recognized by the Big Data Bill (A2218/S582) NJBDA as the State s Advanced Cyberinfrastructure Consortium 3rd Annual NJBDA Symposium "Big Data And the Transformation of Society, 04/16. Rutgers Cyberinfrastructure Excalibur ELF Phase I, II, III National Cyberinfrastructure Linkages NSF XSEDE National Cyberinfrastructure Level 3 Service Provider Coalition for Academic Scientific Computation (CASC) 5
6 Advanced CyberInfrastrucure (ACI) Goal: A balanced advanced research computational & data environment along with co-located storage Phase I: x86-based cluster with an IB-based interconnect, large/medium memory nodes, single/multiple GPU nodes, etc. ~150 Tflops, 3,456 cores, 38TB memory, 1PB usable storage; 16 GPU nodes, etc. Phase II: Modular datacenter on Livingston Campus Phase III: Focus on a next generation system ~600 Tflops; Deployment in Spring 2016 To Out-Compete is to Out-Compute Leadership for the NSF Ocean Observation Initiative in partnership with the Coastal Ocean Observation Lab Credit: John Delaney, University of Washington 6
7 OOI CI Architecture Functional View 18 Thank you! 7
8 Rutgers University Workshop Advances in Computational and Data Science for Investigative Discovery in Biology and Medicine When Thursday October 22, 2015, 8:30 AM to 4:30 PM EST Where Proteomics Room # Frelinghuysen Road, Piscataway, NJ WWW bit.ly/rusynergies 8
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