The Center for Computational Research & Grid Computing
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1 The Center for Computational Research & Grid Computing Russ Miller Center for Computational Research Computer Science & Engineering SUNY-Buffalo Hauptman-Woodward Medical Inst NSF, NIH, DOE NIMA, NYS, HP University at Buffalo The State University of New York
2 Center for Computational Research Snapshot High-Performance Computing and High-End Visualization 110 Research Groups in 27 Depts 13 Local Companies 10 Local Institutions External Funding $116M External Funding $16M as lead $100M in support $43M Vendor Donations Total Leveraged: $0.5B Deliverables 400+ Publications Software, Media, Algorithms, Consulting, Training, CPU Cycles Raptor Image
3 Major Compute Resources Dell Linux Cluster: #22fi#25fi#38fi#95 Apex Bioinformatics System 600 P4 Processors (2.4 GHz) Sun V880 (3), Sun GB RAM; 40 TB Disk; Myrinet Sun 280R (2) SGI Origin3700 (Altix) Intel PIIIs 64 Processors (1.3GHz ITF2) Sun 3960: 7 TB Disk Storage 256 GB RAM HP/Compaq SAN 2.5 TB Disk 75 TB Disk SGI Origin TB Tape 64 Processors (400 MHz) 64 Alpha Processors (400 MHz) 32 GB RAM; 400 GB Disk 32 GB RAM; 400 GB Disk Dell Linux Cluster: #187fi#368fioff 4036 Processors (PIII 1.2 GHz) 2TB RAM; 160TB Disk; 16TB SAN IBM BladeCenter Cluster: # P4 Processors (2.8 GHz) 5TB SAN IBM RS/6000 SP: 78 Processors Sun Cluster: 80 Processors SGI Intel Linux Cluster 150 PIII Processors (1 GHz) Myrinet
4 Visualization Resources Fakespace ImmersaDesk R2 Portable 3D Device Tiled-Display Wall 20 NEC projectors: 15.7M pixels Screen is 11 7 Dell PCs with Myrinet2000 Access Grid Nodes (2) Group-to-Group Communication Commodity components SGI Reality Center 3300W Dual Barco s on 8 4 screen
5 Top500: June 2004 Peak 40 TF 23 TF 20 TF 16 TF 15 TF 16 TF 13 TF 11 TF 12 TF 11 TF Linpack 36 TF 20 TF 14 TF 12 TF 10 TF 9 TF 9 TF 9 TF 9 TF 8 TF
6 Earth Simulator 40 TFlops Peak Homogeneous, Centralized, Proprietary, Vector Expensive! CFD-Weather, Climate, Earthquake 640 NEC SX/6 Nodes (5120 CPUs) Footprint = 4 tennis courts $6M/year in power
7 ASCI Purple and Blue Gene/L ASCI Purple (2004) LLNL IBM Power5 12K Processors 100 TFlops Blue Gene/L (2005) LLNL PowerPC 128K Processors Linux 360 Tflops Chip (2 processors) 2.8/5.6 GF/s 4 MB Compute Card (2 chips, 2x1x1) Node Board (32 chips, 4x4x2) 16 Compute Cards 5.6/11.2 GF/s 0.5 GB DDR Cabinet (32 Node boards, 8x8x16) 90/180 GF/s 8 GB DDR 2.9/5.7 TF/s 256 GB DDR System (64 cabinets, 64x32x32) LLNL Thunder (2004) 23 TF; 1K 4 IT2, Quadrics Sandia/PSC Cray Red Storm (2004) 40 TF, Opteron, Hypertransport LANL Lightning (2004) 11 TF; Linux Networx; 2816 Opteron; Myrinet ORNL Cray X1 (2005) 50 TF; Vector PEs; 2006: 100 TF Dawning (China, 2004) 11 TF; 2560 Operon; Myrinet 180/360 TF/s 16 TB DDR Blue Gene/L
8 Research & Projects Ground Water Modeling Computational Fluid Dynamics Molecular Structure Determination via Shake-and-Bake Protein Folding Digital Signal Processing Grid Computing Computational Chemistry Bioinformatics Real-time Simulations and Urban Visualization Accident Reconstruction Risk Mitigation (GIS) Medical Visualization High School Workshops Virtual Reality
9 Grid Computing DISCOM SinRG APGrid IPG University at Buffalo The State University of New York Center for Computational Research
10 Grid Computing Overview Data Acquisition Advanced Visualization Analysis Imaging Instruments LHC Computational Resources Large-Scale Databases Coordinate Computing Resources, People, Instruments in Dynamic Geographically-Distributed Multi-Institutional Environment Treat Computing Resources like Commodities Compute cycles, data storage, instruments Human communication environments No Central Control; No Trust
11 Factors Enabling the Grid Internet is Infrastructure Increased network bandwidth and advanced services Advances in Storage Capacity Terabyte costs less than $5,000 Internet-Aware Instruments Increased Availability of Compute Resources Clusters, supercomputers, storage, visualization devices Advances in Application Concepts Computational science: simulation and modeling Collaborative environments fi large and varied teams Grids Today Moving towards production; Focus on middleware
12 NSF Extensible TeraGrid Facility Caltech: Data collection analysis LEGEND ANL: Visualization 0.4 TF IA-64 IA32 Datawulf 80 TB Storage IA64 IA32 Sun Cluster Storage Server Disk Storage Visualization Cluster Shared Memory Backplane Router IA64 IA32 IA TF IA Viz nodes 20 TB Storage 30 Gb/s LA Hub Extensible Backplane Network 40 Gb/s Chicago Hub 30 Gb/s 30 Gb/s Figure courtesy of Rob Pennington, NCSA 30 Gb/s 30 Gb/s 4 TF IA-64 DB2, Oracle Servers 500 TB Disk Storage 6 PB Tape Storage 1.1 TF Power4 IA64 Pwr4 Sun IA64 10 TF IA large memory nodes 230 TB Disk Storage GPFS and data mining EV7 EV68 6 TF EV68 71 TB Storage 0.3 TF EV7 shared-memory 150 TB Storage Server Sun SDSC: Data Intensive NCSA: Compute Intensive PSC: Compute Intensive
13 Advanced Computational Data Center ACDC: Grid Overview Joplin: Compute Cluster 300 Dual Processor 2.4 GHz Intel Xeon RedHat Linux TB Scratch Space Young: Compute Cluster 16 Dual Sun Blades 47 Sun Ultra5 Solaris GB Scratch Space Expanding RedHat, IRIX, Solaris, WINNT, etc Computer Science & Engineering 25 Single Processor Sun Ultra5s Nash: Compute Cluster 75 Dual Processor 1 GHz Pentium III RedHat Linux TB Scratch Space ACDC: Grid Portal 4 Processor Dell GHz Intel Xeon RedHat Linux GB Scratch Space Fogerty: Condor Flock Master 1 Dual Processor 250 MHz IP30 IRIX 6.5 School of Dental Medicine 9 Single Processor Dell P4 Desktops Mama: Compute Cluster 9 Dual Processor 1 GHz Pentium III RedHat Linux GB Scratch Space Crosby: Compute Cluster SGI Origin MHz IP35 IRIX m 360 GB Scratch Space T1 Connection 19 IRIX, RedHat, & WINNT Processors Hauptman-Woodward Institute 13 Various SGI IRIX Processors Note: Network connections are 100 Mbps unless otherwise noted.
14 Network Connections 1000 Mbps 100 Mbps FDDI 1.54 Mbps (T1) - RPCI 44.7 Mbps (T3) - BCOEB 100 Mbps Medical/Dental 155 Mbps (OC-3) I2 OC-3 - I1 BCOEB 1.54 Mbps (T1) - HWI NYSERNet NYSERNet 350 Main St 350 Main St Abilene 622 Mbps (OC-12) Commercial
15 ACDC Data Grid Overview (Grid-Available Data Repositories) 182 GB Storage Joplin: Compute Cluster 300 Dual Processor 2.4 GHz Intel Xeon RedHat Linux TB Scratch Space 56 GB Storage Young: Compute Cluster 16 Dual Sun Blades 47 Sun Ultra5 Solaris GB Scratch Space Nash: Compute Cluster 75 Dual Processor 1 GHz Pentium III RedHat Linux TB Scratch Space ACDC: Grid Portal 4 Processor Dell GHz Intel Xeon RedHat Linux GB Scratch Space 100 GB Storage 136 GB Storage Mama: Compute Cluster 9 Dual Processor 1 GHz Pentium III RedHat Linux GB Scratch Space Crosby: Compute Cluster SGI Origin MHz IP35 IRIX m 360 GB Scratch Space 70 GB Storage 100 GB Storage CSE Multi-Store 2 TB Network Attached Storage 1.2 TB Storage Area Network 75 TB Note: Network connections are 100 Mbps unless otherwise noted.
16 ACDC-Grid Browser view of miller group files published by user rappleye
17 ACDC-Grid Administration
18 Grid-Enabling Application Templates Structural Biology Earthquake Engineering Pollution Abatement Geographic Information Systems & BioHazards
19 ACDC-Grid Cyber-Infrastructure Predictive Scheduler Define quality of service estimates of job completion, by better estimating job runtimes by profiling users. Data Grid Automated Data File Migration based on profiling users. High-performance Grid-enabled Data Repositories Develop automated procedures for dynamic data repository creation and deletion. Dynamic Resource Allocation Develop automated procedures for dynamic computational resource allocation.
20 ACDC-Grid Collaborations Grid3+ Collaboration / ivdgl Member Open Science Grid Founding Participant Monitoring & Information Services, co-chair Security, Tech Working Group Participant WNY Grid Initiative Grid-Lite HP Labs Collaboration Innovative Laboratory Prototype Dell Collaboration NE Bio-Grid IBM Research Collaboration MIT, Harvard Grid-Based Visualization SGI Collaboration
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