Core Technology Development Team Meeting
|
|
|
- Mildred Johns
- 5 years ago
- Views:
Transcription
1 Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: Access Code: For international call in numbers, please visit:
2 Agenda Updates on action items Discussion of reported issues Linkout Inclusion of more repositories into DataMed : plan and course of action AMIA presentation Reminders Updates from all team members Supported by the NIH grant 1U24 AI to the University of California, San Diego 2
3 Updates- action items Video demonstration next week Generate a HELP and FAQ page Robust server to host biocaddie to be set up Supported by the NIH grant 1U24 AI to the University of California, San Diego 3
4 Discussion of reported issues Issue no: 63 Your prototype is missing support for collaborative research. It is designed to support individual researchers discovery and access. It needs to provide workspaces for collaborative analyses that are distributed across multiple site. In many cases, the challenge is moving the computation to the application, while managing the execution load. This means being able to run an analysis at the storage location. Reagan Moore from Renci (irods) Out of scope Issue no: 45 Use of quotes for search Needs to be resolved Supported by the NIH grant 1U24 AI to the University of California, San Diego 4
5 Apply for Inclusion in LinkOut To apply for inclusion in LinkOut, send an to Include the following information: Name, address, and phone number of a contact person in your organization. The scope of your resource, including the URL of the resource. Also, please describe the type of NCBI database records to which you would like to apply links. Describe any restrictions on access to the resource. A LinkOut team member will the contact person within 1 week regarding your request.
6 Databases available for linking Provide examples of NCBI database records that you would like to link from, and the corresponding target page in DataMed. Out of top 8 repositories deposited in DataMed, 7 are already participating in LinkOut in some way discussion about the scope.
7 Files for inclusion LinkOut requires two types of files to describe online resources Identity files (XML) Resource files (XML, CSV, Simple Text) These files are specified in the LinkOut DTD. These files include the necessary elements for the NCBI retrieval system to construct an appropriate URL to access specific resources.
8 Inclusion of more repositories into DataMed : plan and course of action 1CT9ozn0_91W8Ul8nYHzDK3ParoPWewow5lmqlGJKQc0/edit#gid=0 19uxGo9tyA6ahtuA3zS_R0BsVdI_tddAXZrXS5eQc8K8/ edit#gid= Each site should get at least 2 repos mapped/team per week Progress to be reported every CDT meeting with plans for next set of repos for mapping Supported by the NIH grant 1U24 AI to the University of California, San Diego 8
9 AMIA Presentation 45 minute presentation on Nov. 15 (Tuesday) from 11.15am-12pm in Salon A3 (Lobby Level 1) Current plan is: Lucila introduce biocaddie Hua will present DataMed and do the demo Poster session for the ingestion pipeline poster is from on Nov. 14 (Monday) from 5pm-6.30pm in the Stevens Salon D (Lobby Level 1) Supported by the NIH grant 1U24 AI to the University of California, San Diego 9
10 Reminders Next CDT meeting has CEDAR folks joining in the call: collaborating on task for the BD2K All Hands meeting Discuss single sign-on options for users of DataMed & CEDAR biocaddie and CEDAR have a joint demo session at AMIA : discuss an overview of what we both plan to talk about so that we present aligned and complementary goals at the demo session BD2K AHM demo set up Supported by the NIH grant 1U24 AI to the University of California, San Diego 10
11 Github Issues Total Issues 150 Number Open 50 Number Closed 100 Associated with v1.0 Number Open 12 Number Closed 8 Usability Issues Number Open 23 Number Closed 10 Associated with v0.5 Number Open 23 Number Closed 63 Number of Bugs Number Open 5 Number Closed 12 Number of Enhancements Number Open 21 Number Closed 28 Number of QuesHons Number Open 9 Number Closed 11 Number of Help Wanted Number Open 3 Number Closed 0 Supported by the NIH grant 1U24 AI to the University of California, San Diego 11
12 Ongoing work Task Supported by the NIH grant 1U24 AI to the University of California, San Diego Status 1 Metadata Ingestion 1.1 Import repositories expansion Ongoing 1.2 Data repository suggestion form at DataMed George/ Xiaoling / Sanda Ongoing 1.3 Metadata mapping review/ reconciliation between curators Ongoing 1.4 Metadata management Ongoing 1.5 Indexing Ongoing 1.6 NLP-based indexing : Gene/protein, Disease, Drug/ chemical, Biological process, Organism, Format, Access, Cell types Implemente d at backend 1.7 Bulk download of indices Not Started 2 Terminology server 2.3 Integrate terminology server (Indexing) Ongoing 4 Interface Design 4.2 Design interface usability issues Ongoing 4.5 Display most Accessed Datasets Not Started 12
13 Ongoing work Task Status 5 Personalized search 5.1 Improve the tracking system Ongoing 6 Searching/Ranking algorithms 6.1 Similar datasets to be expanded Ongoing 7 Display of results 7.1 Sort datasets author, published date, repository, title Ongoing 7.2 What fields should be displayed? Ongoing Additional filters: File type Data Restrictions (data use agreement, restricted, unrestricted) Data Level (participant/aggregate) 7.3 Population (mouse, human, etc) 8 Link to external resources 1. Pubmed: click through to pubmed records of citing publications: copy citation to clipboard Scholix Framework for Linking Data and Literature 3. Linkout Not started Not Started Supported by the NIH grant 1U24 AI to the University of California, San Diego 13
14 Ongoing work Task Status 10 Documentation 10.1 Source code Ongoing 10.2 Tutorials Not Started 10.3 Help menu Not Started 10.4 Video Ongoing 11 Usability studies 11.2 User studies Ongoing Data Duplication issue: Create a plan for how to best display/represent the duplicate in the metadata records and set up a meeting to discuss the workflow for displaying the duplicates in the metadata records Jeff/Anu Additional field in index Generation of benchmark for the dataset 13.4 Execute designed queries and annotate results Ongoing 14 Relationship Network Graph 15 Collaborative research support Supported by the NIH grant 1U24 AI to the University of California, San Diego 14
15 Other issues Please deposit codes in GitHub. Please contact me at if you need access Any other issues? Thank You
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Executive Committee Meeting
Executive Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Minutes. Date: Location: UCSD BRF2 5A03. Attendees Present
Executive Committee Meeting Location: UCSD BRF2 5A03 Date: 8-16-16 Start time: 10:00 am PDT End time: 11:30 am PDT Meeting Objective Attendees Present Minute Taker Executive Committee Meeting UCSD: Lucila
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Steering Committee Meeting
Steering Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Executive Committee Meeting
Executive Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Executive Committee Meeting
Executive Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Metadata Ingestion and Processinng
biomedical and healthcare Data Discovery Index Ecosystem Ingestion and Processinng Jeffrey S. Grethe, Ph.D. 2017 BioCADDIE All Hands Meeting prototype Ingestion Indexing Repositories Ingestion ElasticSearch
Steering Committee Meeting
Steering Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Steering Committee Meeting
Steering Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
Susanna-Assunta Sansone, PhD. Metadata WG3 chair.
Susanna-Assunta Sansone, PhD Metadata WG3 chair 3-workgroup@biocaddie.org WG3 Metadata v v Full description: goals, synergies, phases, members & files Joint effort with BD2K Center for Expanded Data Annotation
Steering Committee Meeting
Steering Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please isit: https://www.readytalk.com/account-administration/international-numbers
Agenda. Clarification of issues Quarter definition Steering and Executive Committee composition Dissemination and community outreach activities
Agenda Clarification of issues Quarter definition Steering and Executive Committee composition Dissemination and community outreach activities Progress and updates Y1Q3 and plans for Y1Q4 Plan for the
Core Technology Development Team Meeting
Core Technology Development Team Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
NCBI News, November 2009
Peter Cooper, Ph.D. NCBI cooper@ncbi.nlm.nh.gov Dawn Lipshultz, M.S. NCBI lipshult@ncbi.nlm.nih.gov Featured Resource: New Discovery-oriented PubMed and NCBI Homepage The NCBI Site Guide A new and improved
The Final Updates. Philippe Rocca-Serra Alejandra Gonzalez-Beltran, Susanna-Assunta Sansone, Oxford e-research Centre, University of Oxford, UK
The Final Updates Supported by the NIH grant 1U24 AI117966-01 to UCSD PI, Co-Investigators at: Philippe Rocca-Serra Alejandra Gonzalez-Beltran, Susanna-Assunta Sansone, Oxford e-research Centre, University
Executive Committee Meeting
Executive Committee Meeting To hear the meeting, you must call in Toll-free phone number: 1-866-740-1260 Access Code: 2201876 For international call in numbers, please visit: https://www.readytalk.com/account-administration/international-numbers
eveloping DataMed the current status
eeloping DataMed the current status Hua Xu Core Deelopment Team (CDT) biocaddie AHM 2017 8/8/17 Supported by the NIH grant 1U24 AI117966-01 to the Uniersity of California, San Diego 1 Outline CDT Roles
Prototyping a Biomedical Ontology Recommender Service
Prototyping a Biomedical Ontology Recommender Service Clement Jonquet Nigam H. Shah Mark A. Musen jonquet@stanford.edu 1 Ontologies & data & annota@ons (1/2) Hard for biomedical researchers to find the
HRA Open User Guide for Awardees
HRA Open User Guide for Awardees HRA Open is an web-based service sponsored by the Health Research Alliance (HRA) that promotes open access by linking your award information with PubMed Central so you
A Data Citation Roadmap for Scholarly Data Repositories
A Data Citation Roadmap for Scholarly Data Repositories Tim Clark (Harvard Medical School & Massachusetts General Hospital) Martin Fenner (DataCite) Mercè Crosas (Institute for Quantiative Social Science,
Metadata Discovery and Integration to Support Repurposing of Heterogeneous Data using the OpenFurther Platform
Metadata Discovery and Integration to Support Repurposing of Heterogeneous Data using the OpenFurther Platform biocaddie All Hands Meeting September 11 th, 2016 Ram Gouripeddi & Julio Facelli Department
Tools for Researchers
University of Miami Scholarly Repository Faculty Research, Publications, and Presentations Department of Health Informatics 1-1-2015 Tools for Researchers Carmen Bou-Crick M.S.L.S. University of Miami,
Data Replication: Automated move and copy of data. PRACE Advanced Training Course on Data Staging and Data Movement Helsinki, September 10 th 2013
Data Replication: Automated move and copy of data PRACE Advanced Training Course on Data Staging and Data Movement Helsinki, September 10 th 2013 Claudio Cacciari c.cacciari@cineca.it Outline The issue
Open Research Online The Open University s repository of research publications and other research outputs
Open Research Online The Open University s repository of research publications and other research outputs The Smart Book Recommender: An Ontology-Driven Application for Recommending Editorial Products
Reproducible & Transparent Computational Science with Galaxy. Jeremy Goecks The Galaxy Team
Reproducible & Transparent Computational Science with Galaxy Jeremy Goecks The Galaxy Team 1 Doing Good Science Previous talks: performing an analysis setting up and scaling Galaxy adding tools libraries
Reproducible Workflows Biomedical Research. P Berlin, Germany
Reproducible Workflows Biomedical Research P11 2018 Berlin, Germany Contributors Leslie McIntosh Research Data Alliance, U.S., Executive Director Oya Beyan Aachen University, Germany Anthony Juehne RDA,
OpenAIRE. Fostering the social and technical links that enable Open Science in Europe and beyond
Alessia Bardi and Paolo Manghi, Institute of Information Science and Technologies CNR Katerina Iatropoulou, ATHENA, Iryna Kuchma and Gwen Franck, EIFL Pedro Príncipe, University of Minho OpenAIRE Fostering
Linking data and publications the past, present, and future. Dr. Hylke Koers, Head of Content Innovation, Elsevier
Linking data and publications the past, present, and future Dr. Hylke Koers, Head of Content Innovation, Elsevier BioCADDIE webinar January 8, 2015 Ease of access Open Access 2 The issue: data is important,
Update on Dataverse Dryad-Dataverse Community Meeting. Mercè Crosas, Elizabeth Quigley & Eleni Castro. Data Science > IQSS > Harvard University
Update on Dataverse Image credit: David Bygott (CC-BY-NC-SA) 2014 Dryad-Dataverse Community Meeting Mercè Crosas, Elizabeth Quigley & Eleni Castro Data Science > IQSS > Harvard University Introduction
Introduction... 2 New Features... 3
WorldShare Collection Manager Release Notes Release Date: February 23, 2015 Contents Introduction... 2 New Features... 3 New Collections button... 3 Retention of User Submitted OCLC Numbers... 4 Edit knowledge
DBpedia Data Processing and Integration Tasks in UnifiedViews
1 DBpedia Data Processing and Integration Tasks in Tomas Knap Semantic Web Company Markus Freudenberg Leipzig University Kay Müller Leipzig University 2 Introduction Agenda, Team 3 Agenda Team & Goal An
Data publication and discovery with Globus
Data publication and discovery with Globus Questions and comments to outreach@globus.org The Globus data publication and discovery services make it easy for institutions and projects to establish collections,
Exploring and Exploiting the Biological Maze. Presented By Vidyadhari Edupuganti Advisor Dr. Zoe Lacroix
Exploring and Exploiting the Biological Maze Presented By Vidyadhari Edupuganti Advisor Dr. Zoe Lacroix Motivation An abundance of biological data sources contain data about scientific entities, such as
Participating in a WebEx Meeting
Participating in a WebEx Meeting This tutorial will focus on participating in a WebEx Meeting. If you would like to learn how to schedule a meeting, host a meeting, or get started in your personal room,
National Center for Biotechnology Information and National Institute of Health Manuscript Submission Accounts Set Up
Puerto Rico Clinical and Translational Research Consortium National Center for Biotechnology Information and National Institute of Health Manuscript Submission Accounts Set Up Prepared by the Evaluation
Core Technology Development Team Meeting
Core Technology Development Team Meeting Agenda v Updates regarding last meeting action items v Presentation by Ergin about Ontology Services v Brief updates from others Supported by the NIH grant 1U24
Describe CVS Tutorial
Describe CVS Tutorial Copyright 1994-2005 Embarcadero Technologies, Inc. Embarcadero Technologies, Inc. 100 California Street, 12th Floor San Francisco, CA 94111 U.S.A. All rights reserved. All brands
DSpace Fedora. Eprints Greenstone. Handle System
Enabling Inter-repository repository Access Management between irods and Fedora Bing Zhu, Uni. of California: San Diego Richard Marciano Reagan Moore University of North Carolina at Chapel Hill May 18,
LIBER Webinar: A Data Citation Roadmap for Scholarly Data Repositories
LIBER Webinar: A Data Citation Roadmap for Scholarly Data Repositories Martin Fenner (DataCite) Mercè Crosas (Institute for Quantiative Social Science, Harvard University) May 15, 2017 2014 Joint Declaration
Harmonizing biocaddie Metadata Schemas for Indexing Clinical Research Datasets Using Semantic Web Technologies
Harmonizing biocaddie Metadata Schemas for Indexing Clinical Research Datasets Using Semantic Web Technologies Harold R. Solbrig 1, Guoqian Jiang 1 1 Mayo Clinic College of Medicine, Rochester, MN [solbrig.harold,
Demos: DMP Assistant and Dataverse
Demos: DMP Assistant and Dataverse Alexandra Cooper, Data Services Coordinator, Queen s University Meghan Goodchild, RDM Systems Librarian, Queen s University/Scholars Portal Overview of session Research
TSRI, 400-S PubMed / MyNCBI
TSRI, 400-S helplib@scripps.edu 858-784-8705 PubMed / MyNCBI My NCBI is a free service available in PubMed (and all other NCBI databases) that allows you to save searches, set up email alerts for search
Data Discovery - Introduction
Data Discovery - Introduction Why (benefits of reusing data) How EUDAT's services help with this (in general) Adam Carter In days gone by: Design an experiment Getting Your Data Conduct the experiment
ProQuest Dissertations and Theses Overview. Austin McLean and Marlene Coles CGS Summer Workshop, July 2017
ProQuest Dissertations and Theses Overview Austin McLean and Marlene Coles CGS Summer Workshop, July 2017 Agenda Dissertations and ProQuest Short form video Pilot Project 2 A mission that aligns with universities
Implementing the RDA Data Citation Recommendations for Long Tail Research Data. Stefan Pröll
Implementing the RDA Data Citation Recommendations for Long Tail Research Data Stefan Pröll Overview 2 Introduction Recap of the WGDC Recommendations Long Tail Research Data SQL Prototype Git Prototype
Renae Barger, Executive Director NN/LM Middle Atlantic Region
Renae Barger, Executive Director NN/LM Middle Atlantic Region rbarger@pitt.edu http://nnlm.gov/mar/ DANJ Meeting, November 4, 2011 Advanced PubMed (20 min) General Information PubMed Citation Types Automatic
Conducting a Self-Assessment of a Long-Term Archive for Interdisciplinary Scientific Data as a Trustworthy Digital Repository
Conducting a Self-Assessment of a Long-Term Archive for Interdisciplinary Scientific Data as a Trustworthy Digital Repository Robert R. Downs and Robert S. Chen Center for International Earth Science Information
Inge Van Nieuwerburgh OpenAIRE NOAD Belgium. Tools&Services. OpenAIRE EUDAT. can be reused under the CC BY license
Inge Van Nieuwerburgh OpenAIRE NOAD Belgium Tools&Services OpenAIRE EUDAT can be reused under the CC BY license Open Access Infrastructure for Research in Europe www.openaire.eu Research Data Services,
Intro to Oracle Web Services Manager
Introduction To Oracle Web Services Manager Session #112 Agenda Oracle WSM Architecture Oracle WSM Concepts & Components Oracle WSM Administration Oracle WSM Licensing & Distribution Dan Norris dnorris@itconvergence.com
Kepler and Grid Systems -- Early Efforts --
Distributed Computing in Kepler Lead, Scientific Workflow Automation Technologies Laboratory San Diego Supercomputer Center, (Joint work with Matthew Jones) 6th Biennial Ptolemy Miniconference Berkeley,
EUDAT. A European Collaborative Data Infrastructure. Daan Broeder The Language Archive MPI for Psycholinguistics CLARIN, DASISH, EUDAT
EUDAT A European Collaborative Data Infrastructure Daan Broeder The Language Archive MPI for Psycholinguistics CLARIN, DASISH, EUDAT OpenAire Interoperability Workshop Braga, Feb. 8, 2013 EUDAT Key facts
Semantic MediaWiki (SMW) for Scientific Literature Management
Semantic MediaWiki (SMW) for Scientific Literature Management Bahar Sateli, René Witte Semantic Software Lab Department of Computer Science and Software Engineering Concordia University, Montréal SMWCon
The iplant Data Commons
The iplant Data Commons Using irods to Facilitate Data Dissemination, Discovery, and Reproducibility Jeremy DeBarry, jdebarry@iplantcollaborative.org Tony Edgin, tedgin@iplantcollaborative.org Nirav Merchant,
Roy Lowry, Gwen Moncoiffe and Adam Leadbetter (BODC) Cathy Norton and Lisa Raymond (MBLWHOI Library) Ed Urban (SCOR) Peter Pissierssens (IODE Project
Roy Lowry, Gwen Moncoiffe and Adam Leadbetter (BODC) Cathy Norton and Lisa Raymond (MBLWHOI Library) Ed Urban (SCOR) Peter Pissierssens (IODE Project Office) Linda Pikula (IODE GEMIM/NOAA Library) Data
Organize. Collaborate. Discover. All About Mendeley
Organize. Collaborate. Discover. www.mendeley.com All About Mendeley 1 What is Mendeley? Free Academic Software Cross-Platform (Win/Mac/Linux/Mobile) All Major Browsers Desktop Web Mobile How does Mendeley
This Statement of Work describes tasks to be performed by the RFC Production Center (RPC).
RFC PRODUCTION CENTER (RPC) STATEMENT OF WORK This Statement of Work describes tasks to be performed by the RFC Production Center (RPC). The RPC is one of the distinct components of the RFC Editor. The
ClinVar. Jennifer Lee, PhD, NCBI/NLM/NIH ClinVar
ClinVar What is ClinVar ClinVar is a freely available, central archive for associating observed variation with supporting clinical and experimental evidence for a wide range of disorders. The database
Data Curation Profile Human Genomics
Data Curation Profile Human Genomics Profile Author Profile Author Institution Name Contact J. Carlson N. Brown Purdue University J. Carlson, jrcarlso@purdue.edu Date of Creation October 27, 2009 Date
Biobtree: A tool to search, map and visualize bioinformatics identifiers and special keywords [version 1; referees: awaiting peer review]
![Biobtree: A tool to search, map and visualize bioinformatics identifiers and special keywords [version 1; referees: awaiting peer review]](/thumbs/88/117074068.jpg "Biobtree: A tool to search, map and visualize bioinformatics identifiers and special keywords [version 1; referees: awaiting peer review]")
SOFTWARE TOOL ARTICLE Biobtree: A tool to search, map and visualize bioinformatics identifiers and special keywords [version 1; referees: awaiting peer review] Tamer Gur European Bioinformatics Institute,
Lab 08. Command Line and Git
Lab 08 Command Line and Git Agenda Final Project Information All Things Git! Make sure to come to lab next week for Python! Final Projects Connect 4 Arduino ios Creative AI Being on a Team - How To Maximize
Software Requirements Specification for the Names project prototype
Software Requirements Specification for the Names project prototype Prepared for the JISC Names Project by Daniel Needham, Amanda Hill, Alan Danskin & Stephen Andrews April 2008 1 Table of Contents 1.
LIS 2680: Database Design and Applications
School of Information Sciences - University of Pittsburgh LIS 2680: Database Design and Applications Summer 2012 Instructor: Zhen Yue School of Information Sciences, University of Pittsburgh E-mail: zhy18@pitt.edu
Data Curation Handbook Steps
Data Curation Handbook Steps By Lisa R. Johnston Preliminary Step 0: Establish Your Data Curation Service: Repository data curation services should be sustained through appropriate staffing and business
Minimal Metadata Standards and MIIDI Reports
Dryad-UK Workshop Wolfson College, Oxford 12 September 2011 Minimal Metadata Standards and MIIDI Reports David Shotton, Silvio Peroni and Tanya Gray Image BioInformatics Research Group Department of Zoology
Quick Reference Guide. Biomedical Answers
Quick Reference Guide Biomedical Answers www.embase.com .... 3 - Homepage... 4.... 5 - Search Forms... 6 - Refine... 8 - Using Emtree... 9 3.... - Reviewing Records... - Preview Abstracts and Index Terms...
EUDAT. Towards a Collaborative Data Infrastructure. Ari Lukkarinen CSC-IT Center for Science, Finland NORDUnet 2012 Oslo, 18 August 2012
EUDAT Towards a Collaborative Data Infrastructure Ari Lukkarinen CSC-IT Center for Science, Finland NORDUnet 2012 Oslo, 18 August 2012 Big (Chaotic) Data DATA GENERATORS 1) Measurement technology. 2) Cheap
Analytics Workflows for Smaller Cases. kcura LLC. All rights reserved.
Analytics Workflows for Smaller Cases The Dallas Steering Committee Sonya Everitt Gardere Wynne Sewell Matt Deegan Jackson Walker 2015 kcura. All rights reserved. Who are you? Analytics for Smaller Cases
TEXT MINING: THE NEXT DATA FRONTIER
TEXT MINING: THE NEXT DATA FRONTIER An Infrastructural Approach Dr. Petr Knoth CORE (core.ac.uk) Knowledge Media institute, The Open University United Kingdom 2 OpenMinTeD Establish an open and sustainable
Dissemination Web Service. Programmatic access to Eurostat data & metadata
Dissemination Web Service Programmatic access to Eurostat data & metadata Session 7: capacity building technical stream 1 Agenda Context 1 2 3 Main features Live demo Getting started Questions & answers
Copyright 2008, Paul Conway.
Unless otherwise noted, the content of this course material is licensed under a Creative Commons Attribution - Non-Commercial - Share Alike 3.0 License.. http://creativecommons.org/licenses/by-nc-sa/3.0/
Advanced Integration Services In IBM Business Process Manager
IBM Software Group Advanced Integration Services In IBM Business Process Manager Pratima Ahuja (pratima@us.ibm.com) Software Engineer 09/11/2012 WebSphere Support Technical Exchange Agenda What is an AIS
Description Cross-domain Task Force Research Design Statement
Description Cross-domain Task Force Research Design Statement Revised 8 November 2004 This document outlines the research design to be followed by the Description Cross-domain Task Force (DTF) of InterPARES
How Primo Works VE. 1.1 Welcome. Notes: Published by Articulate Storyline Welcome to how Primo works.
How Primo Works VE 1.1 Welcome Welcome to how Primo works. 1.2 Objectives By the end of this session, you will know - What discovery, delivery, and optimization are - How the library s collections and
Ontology-based annotation of multiscale imaging data: Utilizing and building the Neuroscience Information Framework. Maryann E.
Ontology-based annotation of multiscale imaging data: Utilizing and building the Neuroscience Information Framework Maryann E. Martone University of California, San Diego What does this mean? 3D Volumes
Data Curation Profile Cornell University, Biophysics
Data Curation Profile Cornell University, Biophysics Profile Author Dianne Dietrich Author s Institution Cornell University Contact dd388@cornell.edu Researcher(s) Interviewed Withheld Researcher s Institution
New User Guide to DSRIP Tracker
Performance Logic, Inc. New User Guide to DSRIP Tracker Initial Steps for a New User Last Revision 6/18/2015 Table of Contents Introduction... 2 Performance Logic Login... 3 Login URL... 3 Username and
Data Curation Profile Movement of Proteins
Data Curation Profile Movement of Proteins Profile Author Institution Name Contact J. Carlson Purdue University J. Carlson, jrcarlso@purdue.edu Date of Creation July 14, 2010 Date of Last Update July 14,
CONTENTdm Users Group Meeting, May 2014 CONTENTdm Users Group Meeting, May 2014
University of South Carolina Scholar Commons CONTENTdm Users Group Meeting, May 2014 CONTENTdm Users Group Meeting, May 2014 CONTENTdm Update Christian Sarason OCLC Follow this and additional works at:
@Note2 tutorial. Hugo Costa Ruben Rodrigues Miguel Rocha
@Note2 tutorial Hugo Costa (hcosta@silicolife.com) Ruben Rodrigues (pg25227@alunos.uminho.pt) Miguel Rocha (mrocha@di.uminho.pt) 23-01-2018 The document presents a typical workflow using @Note2 platform
IUNI Web of Science Data Enclave 102
Enclave 102 Katy Börner and Robert Light Cyberinfrastructure for Network Science Center School of Informatics and Computing and IUNI Indiana University, USA Val Pentchev, Matt Hutchinson, and Benjamin
THE GREAT CONSOLIDATION: ENTERTAINMENT WEEKLY MIGRATION CASE STUDY JON PECK, MATT GRILL, PRESTON SO
THE GREAT CONSOLIDATION: ENTERTAINMENT WEEKLY MIGRATION CASE STUDY JON PECK, MATT GRILL, PRESTON SO Slides: http://goo.gl/qji8kl WHO ARE WE? Jon Peck - drupal.org/u/fluxsauce Matt Grill - drupal.org/u/drpal
TSRI, 400-S PubMed / MyNCBI
TSRI, 400-S helplib@scripps.edu 858-784-8705 PubMed / MyNCBI My NCBI is a free service available in PubMed (and all other NCBI databases) that allows you to save searches, set up email alerts for search
CODE AND DATA MANAGEMENT. Toni Rosati Lynn Yarmey
CODE AND DATA MANAGEMENT Toni Rosati Lynn Yarmey Data Management is Important! Because Reproducibility is the foundation of science Journals are starting to require data deposit You want to get credit