Motif Scan Results. hamap, pat, freq_pat, pre, prf, pfam_fs, pfam_ls.

Transcription

1 Page 1 Motif Scan Results search help user: GUEST log in Tools Hub Results Stored results Private area Misc Deprecated width: 600 settings Query Protein temporarily stored here. HAMAP profiles [hamap], PROSITE patterns [pat], More profiles [pre], Pfam HMMs Database of (local models) [pfam_fs], Pfam HMMs (global models) [pfam_ls], PROSITE motifs patterns (frequent match producers) [freq_pat], PROSITE profiles [prf]. Original output searching HAMAP profiles searching PROSITE patterns searching PROSITE patterns (frequent match producers) searching More profiles searching PROSITE profiles searching Pfam HMMs (local models) searching Pfam HMMs (global models) postprocessing Summary hamap, pat, freq_pat, pre, prf, pfam_fs, pfam_ls. Matches map (features from query are above the ruler, matches of the motif scan are below the ruler) List of matches Legends: 1, freq_pat:camp_ [?]; 2, freq_pat:ck2_ [?]; 3, freq_pat:myristyl [?]; 4, freq_pat:pkc_ [?]; 5, freq_pat:tyr_ [?]; 6, prf:trp_rich [?]; 7, pfam_fs:galpha [?]; 8, pfam_fs:rvt_connect [!]; 9, pfam_fs:rvt_thumb [!]; 10, pfam_ls:rvt_connect [!]; 11, pfam_ ls:rvt_thumb [!]; 12, pfam_ls:rtxa [?]. FT MYHIT freq_pat:camp_ [?] FT MYHIT freq_pat:camp_ [?] FT MYHIT freq_pat:camp_ [?] FT MYHIT 3 6 freq_pat:ck2_ [?] FT MYHIT freq_pat:ck2_ [?] FT MYHIT freq_pat:ck2_ [?] FT MYHIT freq_pat:ck2_ [?] FT MYHIT freq_pat:ck2_ [?] FT MYHIT freq_pat:ck2_ [?] FT MYHIT freq_pat:ck2_ [?] FT MYHIT freq_pat:ck2_ [?] FT MYHIT freq_pat:ck2_ [?] FT MYHIT freq_pat:ck2_ [?] FT MYHIT freq_pat:myristyl [?] FT MYHIT freq_pat:myristyl [?] FT MYHIT freq_pat:myristyl [?] FT MYHIT freq_pat:myristyl [?] FT MYHIT freq_pat:myristyl [?] FT MYHIT freq_pat:pkc_ [?] FT MYHIT freq_pat:pkc_ [?] FT MYHIT freq_pat:pkc_ [?] FT MYHIT freq_pat:pkc_ [?] FT MYHIT freq_pat:tyr_ [?] FT MYHIT freq_pat:tyr_ [?] FT MYHIT prf:rnase_h [!] FT MYHIT prf:rt_pol [!] FT MYHIT prf:trp_rich [?] FT MYHIT pfam_fs:g-alpha [?] FT MYHIT pfam_fs:rvt_1 [!] FT MYHIT pfam_fs:rvt_connect [!] FT MYHIT pfam_fs:rvt_thumb [!] FT MYHIT pfam_fs:rnaseh [!] FT MYHIT pfam_ls:rvt_1 [!] FT MYHIT pfam_ls:rvt_connect [!] FT MYHIT pfam_ls:rvt_thumb [!] FT MYHIT pfam_ls:rnaseh [!] FT MYHIT pfam_ls:rtxa [?] Detail of matches match detail match score motif information pos.: freq_pat:camp_ camp- and cgmpdependent protein

2 Page 2 pos.: pos.: 3-6 pos.: pos.: pos.: pos.: pos.: pos.: pos.: pos.: pos.: site. Legends: 1, freq_pat:ck2_ Casein kinase II phosphorylation site. Legends: 1, pos.: pos.: pos.: freq_pat:myristyl N-myristoylation site. Legends: 1, myristyl.

3 Page 3 pos.: pos.: pos.: pos.: pos.: pos.: pos.: pos.: freq_pat:pkc_ Protein kinase C phosphorylation site. Legends: 1, freq_pat:tyr_ Tyrosine kinase phosphorylation site. Legends: 1, pos.: raw-score = 905 N-score = E-value = 1.8e-13 prf:rnase_h RNase H domain profile. [ graphics ]

4 Page 4 pos.: raw-score = 2347 N-score = E-value = 1.5e-43 prf:rt_pol (RT) catalytic domain profile. [ graphics ] pos.: raw-score = 37 N-score = E-value = 1.2 pos.: raw-score = 2.1 N-score = E-value = prf:trp_rich Tryptophan-rich region profile. [ graphics ] pfam_fs:g-alpha G-protein alpha subunit pos.: raw-score = N-score = E-value = 1.1e-62 pfam_fs:rvt_1 (RNA-dependent DNA polymerase)

5 Page 5 pos.: raw-score = N-score = E-value = 1e-79 pfam_fs:rvt_connect connection domain pos.: raw-score = N-score = E-value = 5.5e-51 pfam_fs:rvt_thumb thumb domain pos.: raw-score = N-score = E-value = 2.4e-56 pfam_fs:rnaseh RNase H

6 Page 6 pos.: raw-score = N-score = E-value = 3.1e-63 pfam_ls:rvt_1 (RNA-dependent DNA polymerase) pos.: raw-score = N-score = E-value = 7.4e-75 pfam_ls:rvt_connect connection domain pos.: raw-score = N-score = E-value = 1e-50 pfam_ls:rvt_thumb thumb domain

7 Page 7 pos.: raw-score = N-score = E-value = 2.4e-54 pfam_ls:rnaseh RNase H pos.: raw-score = 5.4 N-score = E-value = 0.53 pfam_ls:rtxa RtxA repeat Sigrist CJ, Cerutti L, de Castro E, Langendijk-Genevaux PS, Bulliard V, Bairoch A, Hulo N. PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acids Res. 2010; 38(Database issue):d [RIS] MyHits Question or comment about this page