TLC 2 Overview. Lennart Johnsson Director Cullen Distinguished Professor of Computer Science, Mathematics and Electrical and Computer Engineering

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1 TLC 2 Overview Lennart Johnsson Director Cullen Distinguished Professor of Computer Science, Mathematics and Electrical and Computer Engineering

2 TLC2 Overview Outline Mission Services Resources Innovation program Member organizations

3 TLC 2 Mission to foster and support collaborative multidisciplinary research, education and training in Computational Science and Engineering and other disciplines that can benefit from information technology, and in Computer Science and Information Technology

4 TLC 2 Services Assistance in proposal preparation and research award management proposals/yr M$ requested annually ~25 awards annually 15 30M$ in new awards anually Assistance with arrangements of workshops, symposia, conferences, and external relations ~10 conferences/symposia annually ~10 seminars ~5 training sessions (web development, HPC) Outreach and Promotional efforts (web, flyers, posters, ) Develops 5 10 new websites annually Maintains and hosts web sites

5 TLC 2 Services Provide expertise in Data base development Web tools and web development High-performance computation High-performance networking Visualization AV-tools

6 TLC 2 Resources State-of-the-art communication tools and electronic classrooms Facilitate and lead initiatives for high-end computing and storage capabilities Facilitate and lead initiatives for high-end network capabilities Facilitate and lead initiatives for high-end visualization capabilities

7 Communication Facilities AG node from InSorS Used regularly for HiPCAT meetings 50% domestic, 50% international AV Facilities Video conference capabilities in rooms PGH-200, PGH-218, and PGH-232 Ability to direct rendering cluster output to PGH- 200, PGH-218 and PGH-232 in addition to displays in PGH-216

8 48 seats with - 15 flat panel displays - AMD Athlon 3800 dual-core PCs - individual teacher student interaction facilities Dual boot Linux Windows XP server AV for video conferencing Dual projection capability Streaming video from visualization theatre IBIS Retreat Classrooms PGH 200

9 Classrooms PGH seats with Video conference facilities Stereographic projection capabilities Power/Network port at every desk

10 Linux Clusters IBIS Retreat Atlantis Cluster (atlantis.tlc2.uh.edu) 152 Itanium2 nodes dual 1.3 GHz/3MB processor nodes 4 GB per node Myrinet, 152 host ports, 304 spine ports GigE for System Area Networking, 4:1 oversubscription Management network Second most powerful computer in a Texas Educational Institution Ranked 102 among the worlds 500 most powerful computers (2003) Acquired as part of an Intel/HP/TLC 2 partnership

11 Linux Clusters IBIS Retreat Lemuria Coming soon 48 Itanium2 4-way nodes four 1.3 GHz/3MB processors/node 32 GB per node GigE for node interconnect GigE for System Area Networking Management network

12 Linux Clusters IBIS Retreat Archen Pala 46 dual Pentium III nodes dual 1 GHz processors/node 2 GB per node Fast Ethernet for node interconnect GigE for System Area Networking Management network 44 AMD Athlon nodes single 1.4 GHz processors/node 1 GB per node GigE for node interconnect GigE for System Area Networking Management network

13 Linux SMPs Gimli Medusa 16-way Itanium2 SMP GHz/3MB processors 32 GB GigE for System Area Networking Management network Three 4-way Opteron SMPs GHz processors/smp 16 GB memory/smp Infiniband SMP interconnect GigE for System Area Networking Management network

14 Linux SMPs IBIS Retreat Flexo & Bender 64-way Itanium2 SMP GHz/3MB processors each 512 GB memory each Numalink interconnect GigE for System Area Networking Management network

15 ACRL Resource - Eldorado 60 node Itanium2 cluster 6 nodes with dual 0.9GHz/1.5MB processors, 4GB 2 nodes with dual 1.3 GHz/3MB processors, 4GB 52 nodes with 1.5 GHz/3MB processors, 4GB SCI interconnect GigE for System Area Networking Management network

16 ACRL Resource - Medusa 16 node AMD Opteron cluster 16 nodes with dual 2.0GHz processors, 4GB Infiniband interconnect GigE for System Area Networking Management network

17 ACRL SMPs Eldorado Medusa 4-way Itanium2 SMP 4 1.5GHz/6MB Itanium2 processors 16GB SCI interconnect GigE for System Area Networking Management network 4-way Opteron SMP GHz processors 16 GB memor Infiniband SMP interconnect GigE for System Area Networking Management network

18 UH Bioinformatics Lab & IMD Resource - Nibbler 64-way Itanium2 SMP GHz/3MB processors 512 GB memory Numalink interconnect GigE for System Area Networking Management network

19 IDIA Resource - Archimedes 40 node AMD Athlon cluster 40 dual nodes with dual 1.5GHz processors, 2GB Fast Ethernet interconnect GigE for System Area Networking Management network

20 Distributed Storage Network Provide NFS based filesystems to clients in Chemistry, Geosciences, Computer Science, and TLC ~70 TB

21 Coming Soon... Two Sony 4096 x 2160 projectors 16 x 9 projection screen Active stereo 42 seat theatre Rendering cluster with 4 AMD Opteron dual socket dual core nodes 4 GB memory per node Dual nvidia Quadro FX4500 video cards per node GigE Interconnect Management network

22 System No of nodes Sockets per node Cores per socket Processor Memory per node GB Total no of cores Total Memory GB Peak perf. GF Intercon. Location Atlantis Itanium2 1.3GHz Myrinet PGH576 Gemli Itanium2 1.5GHz PGH576 Medusa Opteron 1.6GHz IB PGH576 Flexo Itanium2 1.3GHz RCC Bender Itanium2 1.3GHz RCC Lemuria Itanium2 1.3GHz GigE RCC Archen Pentium-3 1.0GHz Fast E RCC Pala Athlon 1.4GHz Fast E RCC Eldorado Medusa Itanium2 1.5GHz Itanium2 1.5GHz Itanium 2 1.3GHz Itanium2 0.9GHz Opteron Opteron 1.6GHz 2.0GHz ACRL Bioinformatics/IMD Nibbler Itanium2 1.3GHz RCC Archimedes Athlon 1.5GHz Fast E RCC IDIA SCI SCI SCI SCI IB IB PGH576 PGH576

23 Atlantis Usage Statistics FY Node Hours Engineering % Chemistry % Computer Science % TLC % Physics % BioChem % Total Node Hours:

24 TLC 2 Computing, Storage and Visualization Facilities IBIS Retreat UCC 40 TB

25 RENoH College Station Dallas IBIS Retreat Kansas City Chicago San Antonio Baton Rouge Jacksonville El Paso Los Angeles LEARN 12 strands NLR 24 strands

26 LEARN IBIS Retreat NLR Internet2 NewNet August 2007

27 TIGRE Portal and Testbed

28 TIGRE / Ultrascan Demo Centrifuge data TIGRE Portal

29 A Potential Application IBIS Retreat

30 Proton treatment IBIS Retreat

31 Proton treatment IBIS Retreat

32 RENoH Dark Fiber network UHD RCF Research Baylor MD Anderson Rice TAMU HSC Texas Heart I. Texas Women U UTHSCH UH Pharmacy Rice TMC UH UHCL NASA Hospitals Herman H Methodist H. St Luke s Shriner Texas Chikdren s UHCC A&M UTMB

33 National Lambda Rail - NLR

34 Internet2 IBIS Retreat

35 ES-Net, Internet2 ES-Net, Internet2 LEARN SETG NLR

36 Genomic Sequencing

37 Genomic Sequencing IBIS Retreat

38 Genomic Sequencing IBIS Retreat

39 IMD Solexa Sequencer computing and storage env. Sequencer Output Instrument PC (1 TB storage) 1 Gbps via UH campus network 10 Gbps via TLC 2 network Data Switch (231 SR2) Fat Node (5 TB storage?) optional Small Dell PC Control Single mode fiber (1Gbps) via Distributed storage network (private) 231 SR2 Cluster Generation Station 10 Gbps via TLC 2 network Foundry (576 PGH) CISCO (576 PGH) Switch (RCC) 1 Gbps SETG Internet 2 SDSC Atlantis cluster Gimli (16-way) 10 Gbps via TLC 2 network / NLR Data TLC 2 Network Computation UH campus Network new fiber pull Data flow Computation flow Storage Data Data Web server (Data access / Management) Storage Data Data Computation SGI Altix (Nibbler) Firecrest (Image Analysis) Bustard (Base calling) Gerlad (Sequence Analysis) Error/histogram img from Gerlad Need scripts for raw images

40 Keck/IMD NMR Center at UH Brucker 800 NMR Features 18.8-Tesla magnetic field. 800 MHz proton frequency ~2.0 K 70 Gauss/cm z-axis pulsed field gradient (PFG). Two probes: TXI: three-channel inverse probe ( 1 H/ 13 C/ 15 N) QXI: four-channel inverse probe ( 1 H/ 13 C/ 15 N/ 31 P)

41 Keck/IMD NMR Center at UH Brucker 600 NMR Features 14.1-Tesla magnetic field 600 MHz proton frequency 4.2 K 35 Gauss/cm xyz-axis pulsed field gradient (PFG) Two probes: TXI: three-channel inverse probe ( 1 H/ 13 C/ 15 N) QXI: four-channel inverse probe ( 1 H/ 13 C/ 15 N/ 31 P)

42 TLC 2 Innovation Program TLC 2 Innovative Research Awards: FY03 - FY06 $2,357,348 Mechanical Engineering Mathematics Inform. & Logistics Tech.(CTL) Physics Health & Human Performance Psychology HATAC Geosciences Economics Biology & Biochemistry Chemistry Computer Science Biology & Biochemistry Chemistry Computer Science Economics Geosciences HATAC Health & Human Performance Inform. & Logistics Tech.(CTL) Mathematics Mechanical Engineering Physics Psychology

43 TLC 2 - Current initiatives and centers of excellence Abramson Family Center for the Future of Health (joint with the Methodist Hospital Research Institute and Technion-Israel Institute of Technology) Advanced Computing Research Laboratory (ACRL) Houston Luis Stokes Alliance for Minority Participation (H-LSAMP) Institute for Digital Informatics and Analysis (IDIA) Institute for Molecular Design (IMD) Mission Oriented Seismic Research Program (M-OSRP) Southwest Public Safety Technology Center (SWTC) Texas Institute for Measurement, Evaluation and Statistics (TIMES)

44 TLC 2 IBIS Retreat Colleges and Departments Colleges Engineering Liberal Arts and Social Sciences Natural Sciences and Mathematics Pharmacy Technology Departments Antropology Biology and Biochemistry Chemistry Chemical Engineering Computer Science Economics Geosciences Human Development & Consumer Sciences Mathematics Mechanical Engineering Pharmacy Physics Pharmacological and Pharmaceutical Sciences