Theory: modeling, localization and imaging

Size: px
Start display at page:

Download "Theory: modeling, localization and imaging"

Transcription

1 Electromagnetic Brain Mapping with MEG/EEG Theory: modeling, localization and imaging Sylvain Baillet Imaging Group Cognitive Neuroscience & Brain Imaging Lab. Hôpital de la Salpêtrière CNRS UPR640 - LENA MEG Center University Pierre & Marie CURIE Paris, France MEG/EEG Brain Mapping Course, HBM2006, June 11 Sylvain.Baillet@chups.jussieu.fr Sylvain Baillet HBM06-1/33

2 Course Objectives Provide elements to answer the following questions: Understand the basics of forward & inverse problems Review main methodological principles Discuss the spatial resolution of MEG/EEG source imaging Suggest approaches to the evaluation of performances Sylvain Baillet HBM06-2/33

3 From empirical localization Sylvain Baillet HBM06-3/33

4 to Dynamic Brain Mapping Sylvain Baillet HBM06-4/33

5 Key-concept # 1 : Image Reconstruction Sylvain Baillet HBM06-5/33

6 Image Reconstruction: example Radioastronomy: interferometry VLA (27) 27 units, 25 m diameter = resolution of a 130Km diameter telescope Sylvain Baillet HBM06-6/33

7 Principles of Image Reconstruction (1): Image result from some data processing (2): Multiple sensors are super-additive : multiple measures help enhance image quality Sylvain Baillet HBM06-7/33

8 Key-concepts # 2 Modeling biophysics of measurements From the origins of the signals to sensors Solution to the Forward Problem Adapted from Lauri Parkkonen Sylvain Baillet HBM06-8/33

9 Key-concepts # 3 Estimation Adjust the free parameters of the forward model to match the data and possibly some additional expectations Solution to the Inverse Problem Sylvain Baillet HBM06-9/33

10 Modeling phase Solving the MEG/EEG forward problem Sylvain Baillet HBM06-10/33

11 Modeling neural generators Key-concept # 4 Current dipole Building block for the modeling of coherent activity of cortical pyramidal cell assemblies Sylvain Baillet HBM06-11/33

12 Modeling : Electromagnetic Fields of Neural Activity Distance to sensor (d) A Sensor (measure) Neglect propagation if : Wavelength λ λ >>d Propagation of electromagnetic fields in tissues Sylvain Baillet HBM06-12/33

13 Modeling : Electromagnetic Fields of Neural Activity Hamalainen et al., Rev Mod. Phys., 1993 Sylvain Baillet HBM06-13/33

14 Modeling : Electromagnetic Fields of Neural Activity λ=65m at f = 100Hz in head tissues Sensors: average distance to neural generators = 0.15m Quasistatic assumption : Neglect propagation of EM waves Sylvain Baillet HBM06-14/33

15 Modeling : Fields and potentials produced by a current dipole MEG EEG Differences of scalp electric potentials p ( V ) = J σ Ohm s law Magnetic induction 0 J( r') R B( r) = µ dv' 3 4Π R Biot & Savart p J( r) = J ( r) σ Coupling ( r) V ( r) Physics show MEG & EEG are complementary and can be combined Sylvain Baillet HBM06-15/33

16 Geometric modeling of head tissues Spherical geometry Center of the sphere Sylvain Baillet HBM06-16/33

17 The current dipole in a spherical head Fields and potentials can be analytically derived Fast and exact computation Key-concept # 5 A radial current dipole produces no magnetic field outside a closed spherical volume conductor Silent source configurations also exist for EEG Forward model tells us there will not be a unique solution to the inverse problem: Sources can be recovered up to some silent source configuration Sylvain Baillet HBM06-17/33

18 Realistic modeling of head tissues Processing of individual MRI Anatomical MRI Tissue segmentation Define homogeneous compartments Free software solutions: freesurfer, (BEM, FEM) Realistic modeling Tessellations BEM - FEM Sylvain Baillet HBM06-18/33

19 Estimation phase Solving the MEG/EEG inverse problem Sylvain Baillet HBM06-19/33

20 From forward to inverse: fitting the data? data model residuals - = Adjust model parameters Minimize residuals between source model and data E.g. in the least-squares sense Sylvain Baillet HBM06-20/33

21 There is no unique solution to the identification of the MEG and EEG generators But! Key-concept # 6 One single MEG/EEG dataset can originate from an infinite number of current distributions Ill-posed inverse problem Few solutions are compatible with constraints from : Electrophysiology and cortical anatomy Cross-condition and cross-subjects inferences Multimodal investigations (MEG+EEG+fMRI+ ) Sylvain Baillet HBM06-21/33

22 Inverse modeling: two main approaches Localization approach Imaging approach Point-like, equivalent current dipole models Spatial filters (DICS, SAM, beamformers) Signal classification (MUSIC et al.) How many dipoles? Spatial extension of neural activation? Distributed source models Minimum-norm, LORETA, MNE Under-determined (200 data samples, unknowns) Sylvain Baillet HBM06-22/33

23 Localization & spatial-resolution: phantom study Leahy et al., Clin. Neurophys Sylvain Baillet HBM06-23/33

24 Localization & spatial-resolution: phantom study Dipole localization errors 65 electrodes (equivalent to approx. 128 whole-sclap coverage) 122 MEG channels Localization using R-MUSIC true fitted Leahy et al., Clin. Neurophys Sylvain Baillet HBM06-24/33

25 Dipole fitting illustrated 50% noise RMS Sylvain Baillet HBM06-25/33

26 Dipole fitting illustrated Is it reproductible? 50% noise RMS Sensitive to initialization Sylvain Baillet HBM06-26/33

27 Localization in real life Adjust dipole parameters at a selected signal latency Somatosensory primary finger response t=[20,40] ms Meunier et al., Ann. Neurol., 2001 Sylvain Baillet HBM06-27/33

28 Localization and beyond Meunier et al., Ann. Neurol., 2001 Darvas et al., NeuroImage., 2004 Sylvain Baillet HBM06-28/33

29 Localization and beyond Darvas et al., NeuroImage., 2004 Bias and standard errors can be estimated from data Sylvain Baillet HBM06-29/33

30 Imaging & spatial-resolution: phantom study returns 61 electrodes Conductivity profile Fit a virtual cortical surface to evaluate imaging approaches Baillet et al., Phys. Med. Biol Sylvain Baillet HBM06-30/33

31 Imaging & spatial-resolution: phantom study returns Source magnitudes (arbitrary units) Max True Source Label Original Source Linear estimator (MNE) Wang et al,, 1991 Non-linear estimator (ST-MAP) Baillet et al Baillet et al., Phys. Med. Biol Sylvain Baillet HBM06-31/33

32 Imaging illustrated: tennis-ball interception ms P. Senot et al., submitted release catch Sylvain Baillet HBM06-32/33

33 Review MEG-EEG: yet another application of imaae reconstruction Definitions of forward & inverse problem Basic properties of MEG-EEG inverse problem Non uniqueness if no constaints added Resulting image is dependent on source model and estimation approach Localization and imaging approaches Spatial resolution Absolute spatial resolution is fair (1 cm); Relative spatial resolution is very good MEG > EEG Use statistical inference (coming next in the course) to further refine spatial selectivity Sylvain Baillet HBM06-33/33

A comparison of minimum norm and MUSIC for a combined MEG/EEG sensor array

A comparison of minimum norm and MUSIC for a combined MEG/EEG sensor array Adv. Radio Sci., 10, 99 104, 2012 doi:10.5194/ars-10-99-2012 Author(s) 2012. CC Attribution 3.0 License. Advances in Radio Science A comparison of minimum norm and MUSIC for a combined MEG/EEG sensor array

More information

BioEST ver. 1.5beta User Manual Chang-Hwan Im (Ph.D.)

BioEST ver. 1.5beta User Manual Chang-Hwan Im (Ph.D.) BioEST ver. 1.5beta User Manual Chang-Hwan Im (Ph.D.) http://www.bioest.com E-mail: ichism@elecmech.snu.ac.kr imxxx010@umn.edu 1. What is BioEST? BioEST is a special edition of SNUEEG(http://www.bioinverse.com),

More information

Source Reconstruction in MEG & EEG

Source Reconstruction in MEG & EEG Source Reconstruction in MEG & EEG ~ From Brain-Waves to Neural Sources ~ Workshop Karolinska Institutet June 16 th 2017 Program for today Intro Overview of a source reconstruction pipeline Overview of

More information

BESA Research. CE certified software package for comprehensive, fast, and user-friendly analysis of EEG and MEG

BESA Research. CE certified software package for comprehensive, fast, and user-friendly analysis of EEG and MEG BESA Research CE certified software package for comprehensive, fast, and user-friendly analysis of EEG and MEG BESA Research choose the best analysis tool for your EEG and MEG data BESA Research is the

More information

Rapidly recomputable EEG forward models for realistic head shapes

Rapidly recomputable EEG forward models for realistic head shapes INSTITUTE OF PHYSICS PUBLISHING PHYSICS IN MEDICINE AND BIOLOGY Phys. Med. Biol. 46 (2001) 1265 1281 www.iop.org/journals/pb PII: S0031-9155(01)19141-4 Rapidly recomputable EEG forward models for realistic

More information

Modeling versus Accuracy in EEG and MEG Data

Modeling versus Accuracy in EEG and MEG Data Modeling versus Accuracy in EEG and MEG Data John C. Mosher, Richard M. Leahy, Ming-xiong Huang, Michael E. Spencer Los Alamos National Laboratory Group P- MS D Los Alamos, NM 7 mosher@lanl.gov, () -7

More information

MEG and EEG analysis using

MEG and EEG analysis using MEG and EEG analysis using François Tadel Biomag 2012 Paris August 31, 2012 Foretaste Graphic interface 2 Foretaste Scripting environment Rapid selection of files and processes to apply Automatic generation

More information

MEG and EEG analysis using

MEG and EEG analysis using MEG and EEG analysis using François Tadel Dalhousie University, Halifax February 16, 2013 Foretaste Graphic interface 2 Foretaste Scripting environment Rapid selection of files and processes to apply Automatic

More information

MEG and EEG analysis using

MEG and EEG analysis using MEG and EEG analysis using François Tadel & Sylvain Baillet May 2014 Foretaste Graphic interface 2 Foretaste Scripting environment Rapid selection of files and processes to apply Automatic generation of

More information

Biomagnetic inverse problems:

Biomagnetic inverse problems: Biomagnetic inverse problems: Magnetic resonance electrical property tomography (MREPT) and magnetoencephalography (MEG) 2018 Aug. 16 The University of Tokyo Takaaki Nara 1 Contents Measurement What is

More information

- Graphical editing of user montages for convenient data review - Import of user-defined file formats using generic reader

- Graphical editing of user montages for convenient data review - Import of user-defined file formats using generic reader Data review and processing Source montages and 3D whole-head mapping Onset of epileptic seizure with 3D whole-head maps and hemispheric comparison of density spectral arrays (DSA) Graphical display of

More information

DEVELOPMENT OF REALISTIC HEAD MODELS FOR ELECTRO- MAGNETIC SOURCE IMAGING OF THE HUMAN BRAIN

DEVELOPMENT OF REALISTIC HEAD MODELS FOR ELECTRO- MAGNETIC SOURCE IMAGING OF THE HUMAN BRAIN DEVELOPMENT OF REALISTIC HEAD MODELS FOR ELECTRO- MAGNETIC SOURCE IMAGING OF THE HUMAN BRAIN Z. "! #$! Acar, N.G. Gençer Department of Electrical and Electronics Engineering, Middle East Technical University,

More information

May Brain Products Teaching Material. Introduction to Source Analysis Distributed Source Imaging using LORETA. BrainVision Analyzer 2 Webinar

May Brain Products Teaching Material. Introduction to Source Analysis Distributed Source Imaging using LORETA. BrainVision Analyzer 2 Webinar Introduction to Source Analysis Distributed Source Imaging using LORETA BrainVision Analyzer 2 Webinar Scientific Support Team Brain Products GmbH Webinar Team Presenter BP Moderator BP Tech Support Kidist

More information

Bayesian estimation of optical properties of the human head via 3D structural MRI p.1

Bayesian estimation of optical properties of the human head via 3D structural MRI p.1 Bayesian estimation of optical properties of the human head via 3D structural MRI June 23, 2003 at ECBO 2003 Alex Barnett Courant Institute, New York University Collaborators (NMR Center, Mass. Gen. Hosp.,

More information

INDUCTIVE AND CAPACITIVE ARRAY IMAGING OF BURIED OBJECTS

INDUCTIVE AND CAPACITIVE ARRAY IMAGING OF BURIED OBJECTS INDUCTIVE AND CAPACITIVE ARRAY IMAGING OF BURIED OBJECTS D. Schlicker, A. Washabaugh, I. Shay, N. Goldfine JENTEK Sensors, Inc., Waltham, MA, USA Abstract: Despite ongoing research and development efforts,

More information

REDUCED ORDER MODELING IN MULTISPECTRAL PHOTOACOUSTIC TOMOGRAPHY

REDUCED ORDER MODELING IN MULTISPECTRAL PHOTOACOUSTIC TOMOGRAPHY REDUCED ORDER MODELING IN MULTISPECTRAL PHOTOACOUSTIC TOMOGRAPHY Arvind Saibaba Sarah Vallélian Statistical and Applied Mathematical Sciences Institute & North Carolina State University May 26, 2016 OUTLINE

More information

Press Release. Introduction. Prerequisites for LORETA

Press Release. Introduction. Prerequisites for LORETA Press Release Support & Tips A guided tour through LORETA Source localization in BrainVision Analyzer 2 by Dr.-Ing. Kidist Mideksa, Scientific Consultant at Brain Products Scientific Support What do I

More information

doi: / /57/4/N25(

doi: / /57/4/N25( doi: 10.1088/0031-9155/57/4/N25(http://dx.doi.org/10.1088/0031-9155/57/4/N25) NOTE Reducing the staircasing error in computational dosimetry of low-frequency electromagnetic fields Ilkka Laakso and Akimasa

More information

Update ASA 4.8. Expand your research potential with ASA 4.8. Highly advanced 3D display of single channel coherence

Update ASA 4.8. Expand your research potential with ASA 4.8. Highly advanced 3D display of single channel coherence Update ASA 4.8 Expand your research potential with ASA 4.8. The ASA 4.8 software has everything needed for a complete analysis of EEG / ERP and MEG data. From features like (pre)processing of data, co-registration

More information

Section 9. Human Anatomy and Physiology

Section 9. Human Anatomy and Physiology Section 9. Human Anatomy and Physiology 9.1 MR Neuroimaging 9.2 Electroencephalography Overview As stated throughout, electrophysiology is the key tool in current systems neuroscience. However, single-

More information

Unfitted Discontinuous Galerkin in Brain Research and the Topology Preserving Marching Cubes DUNE User Meeting 2015

Unfitted Discontinuous Galerkin in Brain Research and the Topology Preserving Marching Cubes DUNE User Meeting 2015 MÜNSTER Unfitted Discontinuous Galerkin in Brain Research and the Topology Preserving Marching Cubes DUNE User Meeting 2015 Andreas Nüßing September 28th, 2015 MÜNSTER UDG in Brain Research and the TPMC

More information

Electromagnetic migration of marine CSEM data in areas with rough bathymetry Michael S. Zhdanov and Martin Čuma*, University of Utah

Electromagnetic migration of marine CSEM data in areas with rough bathymetry Michael S. Zhdanov and Martin Čuma*, University of Utah Electromagnetic migration of marine CSEM data in areas with rough bathymetry Michael S. Zhdanov and Martin Čuma*, University of Utah Summary In this paper we present a new approach to the interpretation

More information

Sensitivity of MEG and EEG to Source Orientation

Sensitivity of MEG and EEG to Source Orientation Brain Topogr () 3:7 3 DOI.7/s548--54-x ORIGINAL PAPER Sensitivity of MEG and EEG to Source Orientation Seppo P. Ahlfors Jooman Han John W. Belliveau Matti S. Hämäläinen Received: 9 May / Accepted: July

More information

Dual modality electrical impedance and ultrasound reflection tomography to improve image quality

Dual modality electrical impedance and ultrasound reflection tomography to improve image quality Dual modality electrical impedance and ultrasound reflection tomography to improve image quality K. Ain 1,4, D. Kurniadi 2, S. Suprijanto 2, O. Santoso 3 1. Physics Department - Airlangga University, Surabaya,

More information

New Approaches for EEG Source Localization and Dipole Moment Estimation. Shun Chi Wu, Yuchen Yao, A. Lee Swindlehurst University of California Irvine

New Approaches for EEG Source Localization and Dipole Moment Estimation. Shun Chi Wu, Yuchen Yao, A. Lee Swindlehurst University of California Irvine New Approaches for EEG Source Localization and Dipole Moment Estimation Shun Chi Wu, Yuchen Yao, A. Lee Swindlehurst University of California Irvine Outline Motivation why EEG? Mathematical Model equivalent

More information

NIH Public Access Author Manuscript Proc IEEE Int Symp Biomed Imaging. Author manuscript; available in PMC 2012 June 9.

NIH Public Access Author Manuscript Proc IEEE Int Symp Biomed Imaging. Author manuscript; available in PMC 2012 June 9. NIH Public Access Author Manuscript Published in final edited form as: Proc IEEE Int Symp Biomed Imaging. 2011 June 9; 2011(March 30 2011-April 2 2011): 504 507. doi: 10.1109/ISBI.2011.5872455. DIFFERENTIAL

More information

TRAVELTIME TOMOGRAPHY (CONT)

TRAVELTIME TOMOGRAPHY (CONT) 30 March 005 MODE UNIQUENESS The forward model TRAVETIME TOMOGRAPHY (CONT di = A ik m k d = Am (1 Data vecto r Sensitivit y matrix Model vector states the linearized relationship between data and model

More information

THE SPATIAL filter is a popular method used to reconstruct

THE SPATIAL filter is a popular method used to reconstruct 1358 IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, VOL. 57, NO. 6, JUNE 2010 Array-Gain Constraint Minimum-Norm Spatial Filter With Recursively Updated Gram Matrix For Biomagnetic Source Imaging Isamu Kumihashi

More information

Beamformer Source Analysis in MEG

Beamformer Source Analysis in MEG Beamformer Source Analysis in MEG Douglas Cheyne, PhD Program in Neurosciences and Mental Health Hospital for Sick Children Research Institute & Department of Medical Imaging University of Toronto CCD

More information

Numerical dosimetry and 2004/40 European Directive

Numerical dosimetry and 2004/40 European Directive Occupational exposure to quasi-static electromagnetic fields and the EU 2004/40 Directive: assessment of induced current densities in realistic scenarios using a 3D dosimetric approach based on the scalar

More information

Aspects of RF Simulation and Analysis Software Methods. David Carpenter. Remcom. B = t. D t. Remcom (Europe)

Aspects of RF Simulation and Analysis Software Methods. David Carpenter. Remcom. B = t. D t. Remcom (Europe) Remcom (Europe) Central Boulevard Blythe Valley Park Solihull West Midlands England, B90 8AG www.remcom.com +44 870 351 7640 +44 870 351 7641 (fax) Aspects of RF Simulation and Analysis Software Methods

More information

Improved MEG/EEG source localization with reweighted mixed-norms

Improved MEG/EEG source localization with reweighted mixed-norms Improved MEG/EEG source localization with reweighted mixed-norms Daniel Strohmeier, Jens Haueisen, Alexandre Gramfort To cite this version: Daniel Strohmeier, Jens Haueisen, Alexandre Gramfort. Improved

More information

Background: Bioengineering - Electronics - Signal processing. Biometry - Person Identification from brain wave detection University of «Roma TRE»

Background: Bioengineering - Electronics - Signal processing. Biometry - Person Identification from brain wave detection University of «Roma TRE» Background: Bioengineering - Electronics - Signal processing Neuroscience - Source imaging - Brain functional connectivity University of Rome «Sapienza» BCI - Feature extraction from P300 brain potential

More information

Advanced Image Reconstruction Methods for Photoacoustic Tomography

Advanced Image Reconstruction Methods for Photoacoustic Tomography Advanced Image Reconstruction Methods for Photoacoustic Tomography Mark A. Anastasio, Kun Wang, and Robert Schoonover Department of Biomedical Engineering Washington University in St. Louis 1 Outline Photoacoustic/thermoacoustic

More information

Effect of age and dementia on topology of brain functional networks. Paul McCarthy, Luba Benuskova, Liz Franz University of Otago, New Zealand

Effect of age and dementia on topology of brain functional networks. Paul McCarthy, Luba Benuskova, Liz Franz University of Otago, New Zealand Effect of age and dementia on topology of brain functional networks Paul McCarthy, Luba Benuskova, Liz Franz University of Otago, New Zealand 1 Structural changes in aging brain Age-related changes in

More information

Error analysis of a Galerkin method to solve the forward problem in MEG using the boundary element method

Error analysis of a Galerkin method to solve the forward problem in MEG using the boundary element method Computer Methods and Programs in Biomedicine 00 (2003) 1/14 www.elsevier.com/locate/cmpb Error analysis of a Galerkin method to solve the forward problem in MEG using the boundary element method atu Tissari

More information

Diffuse Optical Tomography, Inverse Problems, and Optimization. Mary Katherine Huffman. Undergraduate Research Fall 2011 Spring 2012

Diffuse Optical Tomography, Inverse Problems, and Optimization. Mary Katherine Huffman. Undergraduate Research Fall 2011 Spring 2012 Diffuse Optical Tomography, Inverse Problems, and Optimization Mary Katherine Huffman Undergraduate Research Fall 11 Spring 12 1. Introduction. This paper discusses research conducted in order to investigate

More information

Quantitative imaging for clinical dosimetry

Quantitative imaging for clinical dosimetry Quantitative imaging for clinical dosimetry Irène Buvat Laboratoire d Imagerie Fonctionnelle U678 INSERM - UPMC CHU Pitié-Salpêtrière, Paris buvat@imed.jussieu.fr http://www.guillemet.org/irene Methodology

More information

Spatial Filter Approach for Comparison of the Forward and Inverse Problems of Electroencephalography and Magnetoencephalography

Spatial Filter Approach for Comparison of the Forward and Inverse Problems of Electroencephalography and Magnetoencephalography Annals of Biomedical Engineering, Vol. 29, pp. 214 226, 2001 Printed in the USA. All rights reserved. 0090-6964/2001/29 3 /214/13/$15.00 Copyright 2001 Biomedical Engineering Society Spatial Filter Approach

More information

arxiv: v3 [physics.class-ph] 5 Sep 2016

arxiv: v3 [physics.class-ph] 5 Sep 2016 arxiv:1605.00923v3 [physics.class-ph] 5 Sep 2016 Integral equations and boundary-element solution for static potential in a general piece-wise homogeneous volume conductor Matti Stenroos Department of

More information

Improving the Interpretability of All-to-All Pairwise Source Connectivity Analysis in MEG With Nonhomogeneous Smoothing

Improving the Interpretability of All-to-All Pairwise Source Connectivity Analysis in MEG With Nonhomogeneous Smoothing r Human Brain Mapping 32:426 437 (2011) r Improving the Interpretability of All-to-All Pairwise Source Connectivity Analysis in MEG With Nonhomogeneous Smoothing Jan-Mathijs Schoffelen* and Joachim Gross

More information

Visualization of Magnetoencephalographic Data Using Minimum Current Estimates

Visualization of Magnetoencephalographic Data Using Minimum Current Estimates NeuroImage 10, 173 180 (1999) Article ID nimg.1999.0454, available online at http://www.idealibrary.com on Visualization of Magnetoencephalographic Data Using Minimum Current Estimates K. Uutela,* M. Hämäläinen,*

More information

MultiVariate Bayesian (MVB) decoding of brain images

MultiVariate Bayesian (MVB) decoding of brain images MultiVariate Bayesian (MVB) decoding of brain images Alexa Morcom Edinburgh SPM course 2015 With thanks to J. Daunizeau, K. Brodersen for slides stimulus behaviour encoding of sensorial or cognitive state?

More information

RECONSTRUCTION AND ENHANCEMENT OF CURRENT DISTRIBUTION ON CURVED SURFACES FROM BIOMAGNETIC FIELDS USING POCS

RECONSTRUCTION AND ENHANCEMENT OF CURRENT DISTRIBUTION ON CURVED SURFACES FROM BIOMAGNETIC FIELDS USING POCS DRAFT: October, 4: File: ramon-et-al pp.4 Page 4 Sheet of 8 CANADIAN APPLIED MATHEMATICS QUARTERLY Volume, Number, Summer RECONSTRUCTION AND ENHANCEMENT OF CURRENT DISTRIBUTION ON CURVED SURFACES FROM

More information

An Introduction To Automatic Tissue Classification Of Brain MRI. Colm Elliott Mar 2014

An Introduction To Automatic Tissue Classification Of Brain MRI. Colm Elliott Mar 2014 An Introduction To Automatic Tissue Classification Of Brain MRI Colm Elliott Mar 2014 Tissue Classification Tissue classification is part of many processing pipelines. We often want to classify each voxel

More information

Topology Correction for Brain Atlas Segmentation using a Multiscale Algorithm

Topology Correction for Brain Atlas Segmentation using a Multiscale Algorithm Topology Correction for Brain Atlas Segmentation using a Multiscale Algorithm Lin Chen and Gudrun Wagenknecht Central Institute for Electronics, Research Center Jülich, Jülich, Germany Email: l.chen@fz-juelich.de

More information

A Model-Independent, Multi-Image Approach to MR Inhomogeneity Correction

A Model-Independent, Multi-Image Approach to MR Inhomogeneity Correction Tina Memo No. 2007-003 Published in Proc. MIUA 2007 A Model-Independent, Multi-Image Approach to MR Inhomogeneity Correction P. A. Bromiley and N.A. Thacker Last updated 13 / 4 / 2007 Imaging Science and

More information

Wavefront-based models for inverse electrocardiography. Alireza Ghodrati (Draeger Medical) Dana Brooks, Gilead Tadmor (Northeastern University)

Wavefront-based models for inverse electrocardiography. Alireza Ghodrati (Draeger Medical) Dana Brooks, Gilead Tadmor (Northeastern University) Wavefront-based models for inverse electrocardiography Alireza Ghodrati (Draeger Medical) Dana Brooks, Gilead Tadmor (Northeastern University) Rob MacLeod (University of Utah) Inverse ECG Basics Problem

More information

[IV] EEG/MEG forward simulation through h- and p-type finite elements. Sampsa Pursiainen

[IV] EEG/MEG forward simulation through h- and p-type finite elements. Sampsa Pursiainen [IV] EEG/MEG forward simulation through h- and p-type finite elements Sampsa Pursiainen Journal of Physics: Conference Series. Vol. 124(1), 012041 (11pp), 2008. c 2008 Institute of Physics. Reproduced

More information

Electromagnetic Field Modeling in Human Tissue

Electromagnetic Field Modeling in Human Tissue Electromagnetic Field Modeling in Human Tissue Iliana Marinova, Valentin Mateev Abstract For investigations of electromagnetic field distributions in biological structures by Finite Element Method (FEM),

More information

(x, y, z) m 2. (x, y, z) ...] T. m 2. m = [m 1. m 3. Φ = r T V 1 r + λ 1. m T Wm. m T L T Lm + λ 2. m T Hm + λ 3. t(x, y, z) = m 1

(x, y, z) m 2. (x, y, z) ...] T. m 2. m = [m 1. m 3. Φ = r T V 1 r + λ 1. m T Wm. m T L T Lm + λ 2. m T Hm + λ 3. t(x, y, z) = m 1 Class 1: Joint Geophysical Inversions Wed, December 1, 29 Invert multiple types of data residuals simultaneously Apply soft mutual constraints: empirical, physical, statistical Deal with data in the same

More information

COHERENT MEG/EEG SOURCE LOCALIZATION IN TRANSFORMED DATA SPACE

COHERENT MEG/EEG SOURCE LOCALIZATION IN TRANSFORMED DATA SPACE Biomedical Engineering: Applications, Basis and Communications, Vol. 22, No. 5 (21) 351 365 DOI: 1.415/S11623721211 COHERENT MEG/EEG SOURCE LOCALIZATION IN TRANSFORMED DATA SPACE Junpeng Zhang,, Sarang

More information

Collaborative Sparsity and Compressive MRI

Collaborative Sparsity and Compressive MRI Modeling and Computation Seminar February 14, 2013 Table of Contents 1 T2 Estimation 2 Undersampling in MRI 3 Compressed Sensing 4 Model-Based Approach 5 From L1 to L0 6 Spatially Adaptive Sparsity MRI

More information

ROUGH SURFACES INFLUENCE ON AN INDOOR PROPAGATION SIMULATION AT 60 GHz.

ROUGH SURFACES INFLUENCE ON AN INDOOR PROPAGATION SIMULATION AT 60 GHz. ROUGH SURFACES INFLUENCE ON AN INDOOR PROPAGATION SIMULATION AT 6 GHz. Yann COCHERIL, Rodolphe VAUZELLE, Lilian AVENEAU, Majdi KHOUDEIR SIC, FRE-CNRS 7 Université de Poitiers - UFR SFA Bât SPMI - Téléport

More information

Ray Optics I. Last time, finished EM theory Looked at complex boundary problems TIR: Snell s law complex Metal mirrors: index complex

Ray Optics I. Last time, finished EM theory Looked at complex boundary problems TIR: Snell s law complex Metal mirrors: index complex Phys 531 Lecture 8 20 September 2005 Ray Optics I Last time, finished EM theory Looked at complex boundary problems TIR: Snell s law complex Metal mirrors: index complex Today shift gears, start applying

More information

Hesheng Liu, Member, IEEE, Xiaorong Gao, Paul H. Schimpf, Member, IEEE, Fusheng Yang, and Shangkai Gao, Senior Member, IEEE

Hesheng Liu, Member, IEEE, Xiaorong Gao, Paul H. Schimpf, Member, IEEE, Fusheng Yang, and Shangkai Gao, Senior Member, IEEE 1794 IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, NO 10, VOL. 51, OCTOBER 2004 A Recursive Algorithm for the Three-Dimensional Imaging of Brain Electric Activity: Shrinking LORETA-FOCUSS Hesheng Liu, Member,

More information

High Order Super Nested Arrays

High Order Super Nested Arrays High Order Super Nested Arrays Chun-Lin Liu 1 and P. P. Vaidyanathan 2 Dept. of Electrical Engineering, MC 136-93 California Institute of Technology, Pasadena, CA 91125, USA cl.liu@caltech.edu 1, ppvnath@systems.caltech.edu

More information

Hesheng Liu, Member, IEEE, Paul H. Schimpf*, Member, IEEE, Guoya Dong, Xiaorong Gao, Fusheng Yang, and Shangkai Gao, Senior Member, IEEE

Hesheng Liu, Member, IEEE, Paul H. Schimpf*, Member, IEEE, Guoya Dong, Xiaorong Gao, Fusheng Yang, and Shangkai Gao, Senior Member, IEEE IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, VOL. 52, NO. 10, OCTOBER 2005 1681 Standardized Shrinking LORETA-FOCUSS (SSLOFO): A New Algorithm for Spatio-Temporal EEG Source Reconstruction Hesheng Liu,

More information

ASA Getting Started. ANT BV, Enschede, Netherlands Advanced Neuro Technology

ASA Getting Started. ANT BV, Enschede, Netherlands Advanced Neuro Technology ASA Getting Started ANT BV, Enschede, Netherlands Advanced Neuro Technology www.ant-neuro.com asa@ant-neuro.com TABLE OF CONTENTS DISCLAIMER... 3 NOTICE... 3 INTRODUCTION... 5 ASA-LAB... 6 ASA-LAB RECORDING

More information

Proceedings of Meetings on Acoustics

Proceedings of Meetings on Acoustics Proceedings of Meetings on Acoustics Volume 19, 2013 http://acousticalsociety.org/ ICA 2013 Montreal Montreal, Canada 2-7 June 2013 Biomedical Acoustics Session 1aBA: Ultrasound Tomography 1aBA3. A contrast

More information

Sparse Source EEG Imaging with the Variational Garrote

Sparse Source EEG Imaging with the Variational Garrote Downloaded from orbit.dtu.dk on: Jun 8, 28 Sparse Source EEG Imaging with the Variational Garrote Hansen, Sofie Therese; Stahlhut, Carsten; Hansen, Lars Kai Published in: 23 International Workshop on Pattern

More information

Spatial Variation of Sea-Level Sea level reconstruction

Spatial Variation of Sea-Level Sea level reconstruction Spatial Variation of Sea-Level Sea level reconstruction Biao Chang Multimedia Environmental Simulation Laboratory School of Civil and Environmental Engineering Georgia Institute of Technology Advisor:

More information

Comets v. 1.0 Matlab toolbox. User Manual. Written by Young-Jin Jung

Comets v. 1.0 Matlab toolbox. User Manual. Written by Young-Jin Jung Comets v. 1.0 Matlab toolbox User Manual Written by Young-Jin Jung (cometstool@gmail.com) Comets A Matlab toolbox for simulating electric field due to tdcs Version 1.0, Feb. 1, 2012 Downloadable at http://www.cometstool.com

More information

Lecture 24 EM waves Geometrical optics

Lecture 24 EM waves Geometrical optics Physics 2102 Jonathan Dowling Lecture 24 EM waves Geometrical optics EM spherical waves The intensity of a wave is power per unit area. If one has a source that emits isotropically (equally in all directions)

More information

Influence of mesh density on a finite element model under dynamic loading Sébastien ROTH

Influence of mesh density on a finite element model under dynamic loading Sébastien ROTH Influence of mesh density on a finite element model under dynamic loading Sébastien ROTH Jennifer OUDRY Influence of mesh density on a finite element model under dynamic loading 1. Introduction 2. Theoretical

More information

Spatial-temporal Source Reconstruction for Magnetoencephalography

Spatial-temporal Source Reconstruction for Magnetoencephalography Spatial-temporal Source Reconstruction for Magnetoencephalography Jing Kan Submitted for the degree of Doctor of Philosophy University of York Department of Computer Science March. 2011 Abstract Magnetoencephalography

More information

MODELING AND MEASUREMENT SYSTEM FOR MAGNETIC FIELD DISTRIBUTIONS IN BIOLOGICAL STRUCTURES

MODELING AND MEASUREMENT SYSTEM FOR MAGNETIC FIELD DISTRIBUTIONS IN BIOLOGICAL STRUCTURES MODELING AND MEASUREMENT SYSTEM FOR MAGNETIC FIELD DISTRIBUTIONS IN BIOLOGICAL STRUCTURES I. Marinova, V. Mateev, H. Endo * and Y. Saito ** Department of Electrical Apparatus Technical University of Sofia

More information

Experiment 5: Polarization and Interference

Experiment 5: Polarization and Interference Experiment 5: Polarization and Interference Nate Saffold nas2173@columbia.edu Office Hour: Mondays, 5:30PM-6:30PM @ Pupin 1216 INTRO TO EXPERIMENTAL PHYS-LAB 1493/1494/2699 Introduction Outline: Review

More information

An Introduction to the Finite Difference Time Domain (FDTD) Method & EMPIRE XCcel

An Introduction to the Finite Difference Time Domain (FDTD) Method & EMPIRE XCcel An Introduction to the Finite Difference Time Domain (FDTD) Method & EMPIRE XCcel Simulation Model definition for FDTD DUT Port Simulation Box Graded Mesh six Boundary Conditions 1 FDTD Basics: Field components

More information

Development of a Maxwell Equation Solver for Application to Two Fluid Plasma Models. C. Aberle, A. Hakim, and U. Shumlak

Development of a Maxwell Equation Solver for Application to Two Fluid Plasma Models. C. Aberle, A. Hakim, and U. Shumlak Development of a Maxwell Equation Solver for Application to Two Fluid Plasma Models C. Aberle, A. Hakim, and U. Shumlak Aerospace and Astronautics University of Washington, Seattle American Physical Society

More information

arxiv: v1 [q-bio.nc] 17 Apr 2017

arxiv: v1 [q-bio.nc] 17 Apr 2017 EEG SOURCE IMAGING ASSISTS DECODING IN A FACE RECOGNITION TASK arxiv:1704.05748v1 [q-bio.nc] 17 Apr 2017 Rasmus S. Andersen, Anders U. Eliasen, Nicolai Pedersen, Michael Riis Andersen, Sofie Therese Hansen,

More information

A 3D-2D AGILD EM Modeling and Inversion Imaging

A 3D-2D AGILD EM Modeling and Inversion Imaging PIERS ONLINE, VOL. 3, NO. 4, 2007 423 A 3D-2D AGILD EM Modeling and Inversion Imaging J. Li 1, G. Xie 1, M. Oristaglio 2, L. Xie 1, and F. Xie 1 1 GL Geophysical Laboratory, USA 2 Schlumberger-Doll Research,

More information

3D efficiency of some road barrier crownings using a 2D½ BEM

3D efficiency of some road barrier crownings using a 2D½ BEM 3D efficiency of some road barrier crownings using a 2D½ BEM paper ID: 244 /p.1 J. Defrance, L. Bouilloud, E. Premat, Ph. Jean CTB (Centre cientifique et Technique du Bâtiment) 24, rue Joseph Fourier 384

More information

The Anatomical Equivalence Class Formulation and its Application to Shape-based Computational Neuroanatomy

The Anatomical Equivalence Class Formulation and its Application to Shape-based Computational Neuroanatomy The Anatomical Equivalence Class Formulation and its Application to Shape-based Computational Neuroanatomy Sokratis K. Makrogiannis, PhD From post-doctoral research at SBIA lab, Department of Radiology,

More information

2D and 3D Far-Field Radiation Patterns Reconstruction Based on Compressive Sensing

2D and 3D Far-Field Radiation Patterns Reconstruction Based on Compressive Sensing Progress In Electromagnetics Research M, Vol. 46, 47 56, 206 2D and 3D Far-Field Radiation Patterns Reconstruction Based on Compressive Sensing Berenice Verdin * and Patrick Debroux Abstract The measurement

More information

Enhao Gong, PhD Candidate, Electrical Engineering, Stanford University Dr. John Pauly, Professor in Electrical Engineering, Stanford University Dr.

Enhao Gong, PhD Candidate, Electrical Engineering, Stanford University Dr. John Pauly, Professor in Electrical Engineering, Stanford University Dr. Enhao Gong, PhD Candidate, Electrical Engineering, Stanford University Dr. John Pauly, Professor in Electrical Engineering, Stanford University Dr. Greg Zaharchuk, Associate Professor in Radiology, Stanford

More information

Aprecorrected-FFT method to accelerate the solution of the forward problem in magnetoencephalography

Aprecorrected-FFT method to accelerate the solution of the forward problem in magnetoencephalography INSTITUTE OF PHYSICSPUBLISHING Phys. Med. Biol. 48 (2003) 523 541 PHYSICS INMEDICINE AND BIOLOGY PII: S0031-9155(03)52212-6 Aprecorrected-FFT method to accelerate the solution of the forward problem in

More information

Spectral analysis of non-stationary CT noise

Spectral analysis of non-stationary CT noise Spectral analysis of non-stationary CT noise Kenneth M. Hanson Los Alamos Scientific Laboratory Int. Symposium and Course on Computed Tomography, Las Vegas, April 7-11, 1980 This presentation available

More information

3D TeraHertz Tomography

3D TeraHertz Tomography 3D TeraHertz Tomography B. Recur, 3 A. Younus, 1 S. Salort, 2 P. Mounaix, 1 B. Chassagne, 2 P. Desbarats, 3 1 LOMA, Université de Bordeaux / CNRS 2 ALPhANOV, Centre Technologique Optique et Lasers, Université

More information

Multi-modality Fusion in Brain Imaging. EEG and fmri Case

Multi-modality Fusion in Brain Imaging. EEG and fmri Case Multi-modality Fusion in Brain Imaging. EEG and fmri Case Yaroslav Halchenko CIS Department NJIT. RUMBA Laboratories Rutgers-Newark. 1 Introduction Nowadays a lot of attention in functional brain imaging

More information

The organization of the human cerebral cortex estimated by intrinsic functional connectivity

The organization of the human cerebral cortex estimated by intrinsic functional connectivity 1 The organization of the human cerebral cortex estimated by intrinsic functional connectivity Journal: Journal of Neurophysiology Author: B. T. Thomas Yeo, et al Link: https://www.ncbi.nlm.nih.gov/pubmed/21653723

More information

ELECTRICAL brain activity is spatially distributed within

ELECTRICAL brain activity is spatially distributed within IEEE TRANSACTIONS ON MEDICAL IMAGING, VOL. 36, NO. 7, JULY 2017 1583 Back-Projection Cortical Potential Imaging: Theory and Results Dror Haor, Reuven Shavit, Moshe Shapiro, and Amir B. Geva Abstract Electroencephalography

More information

Group Sta/s/cs with BESA and BrainWave

Group Sta/s/cs with BESA and BrainWave 24/04/12 Group Sta/s/cs with BESA and Graciela Tesan, PhD CCD From raw data to p- values 1 MEG and EEG data preprocessing and analysis BESA Sta/s/cs: analyses of EEG ac/vity and MEG distributed sources

More information

THE localization of current sources in the human brain from

THE localization of current sources in the human brain from 1446 IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, VOL. 54, NO. 8, AUGUST 2007 Geometry-Adapted Hexahedral Meshes Improve Accuracy of Finite-Element-Method-Based EEG Source Analysis Carsten H. Wolters*,

More information

Stage terrain 3A Heissenstein. Electrical surveying

Stage terrain 3A Heissenstein. Electrical surveying Stage terrain 3A Heissenstein Electrical surveying Introduction The principle method for measuring the surface resistivity is always the same. An electric current is sent into the subsurface through two

More information

Cognitive States Detection in fmri Data Analysis using incremental PCA

Cognitive States Detection in fmri Data Analysis using incremental PCA Department of Computer Engineering Cognitive States Detection in fmri Data Analysis using incremental PCA Hoang Trong Minh Tuan, Yonggwan Won*, Hyung-Jeong Yang International Conference on Computational

More information

Multiple comparisons problem and solutions

Multiple comparisons problem and solutions Multiple comparisons problem and solutions James M. Kilner http://sites.google.com/site/kilnerlab/home What is the multiple comparisons problem How can it be avoided Ways to correct for the multiple comparisons

More information

2D Inversions of 3D Marine CSEM Data Hung-Wen Tseng*, Lucy MacGregor, and Rolf V. Ackermann, Rock Solid Images, Inc.

2D Inversions of 3D Marine CSEM Data Hung-Wen Tseng*, Lucy MacGregor, and Rolf V. Ackermann, Rock Solid Images, Inc. 2D Inversions of 3D Marine CSEM Data Hung-Wen Tseng*, Lucy MacGregor, and Rolf V. Ackermann, Rock Solid Images, Inc. Summary A combination of 3D forward simulations and 2D and 3D inversions have been used

More information

Monocular Human Motion Capture with a Mixture of Regressors. Ankur Agarwal and Bill Triggs GRAVIR-INRIA-CNRS, Grenoble, France

Monocular Human Motion Capture with a Mixture of Regressors. Ankur Agarwal and Bill Triggs GRAVIR-INRIA-CNRS, Grenoble, France Monocular Human Motion Capture with a Mixture of Regressors Ankur Agarwal and Bill Triggs GRAVIR-INRIA-CNRS, Grenoble, France IEEE Workshop on Vision for Human-Computer Interaction, 21 June 2005 Visual

More information

RECONSTRUCTION AND ENHANCEMENT OF CURRENT DISTRIBUTION ON CURVED SURFACES FROM BIOMAGNETIC FIELDS USING POCS

RECONSTRUCTION AND ENHANCEMENT OF CURRENT DISTRIBUTION ON CURVED SURFACES FROM BIOMAGNETIC FIELDS USING POCS CANADIAN APPLIED MATHEMATICS QUARTERLY Volume 10, Number 2, Summer 2002 RECONSTRUCTION AND ENHANCEMENT OF CURRENT DISTRIBUTION ON CURVED SURFACES FROM BIOMAGNETIC FIELDS USING POCS Based on a presentation

More information

Stage terrain 3A Heissenstein. Electrical surveying

Stage terrain 3A Heissenstein. Electrical surveying Stage terrain 3A Heissenstein Electrical surveying Introduction The principle method for measuring the surface resistivity is always the same. An electric current is sent into the subsurface through two

More information

A MODELING STUDY OF LOW-FREQUENCY CSEM IN SHALLOW WATER

A MODELING STUDY OF LOW-FREQUENCY CSEM IN SHALLOW WATER A MODELING STUDY OF LOW-FREQUENCY CSEM IN SHALLOW WATER Michael A. Frenkel and Sofia Davydycheva EMGS ASA ABSTRACT The applicability and resolution power of low-frequency Controlled-Source Electromagnetic

More information

Reconstruction of the Vibro-Acoustic Field on the Surface of the Refrigerator Compressor by Using the BEM-Based Acoustic Holography

Reconstruction of the Vibro-Acoustic Field on the Surface of the Refrigerator Compressor by Using the BEM-Based Acoustic Holography Purdue University Purdue e-pubs International Compressor Engineering Conference School of Mechanical Engineering 1998 Reconstruction of the Vibro-Acoustic Field on the Surface of the Refrigerator Compressor

More information

High dynamic range magnetic resonance flow imaging in the abdomen

High dynamic range magnetic resonance flow imaging in the abdomen High dynamic range magnetic resonance flow imaging in the abdomen Christopher M. Sandino EE 367 Project Proposal 1 Motivation Time-resolved, volumetric phase-contrast magnetic resonance imaging (also known

More information

Preprocessing II: Between Subjects John Ashburner

Preprocessing II: Between Subjects John Ashburner Preprocessing II: Between Subjects John Ashburner Pre-processing Overview Statistics or whatever fmri time-series Anatomical MRI Template Smoothed Estimate Spatial Norm Motion Correct Smooth Coregister

More information

Physics 4C Chapter 33: Electromagnetic Waves

Physics 4C Chapter 33: Electromagnetic Waves Physics 4C Chapter 33: Electromagnetic Waves Our greatest glory is not in never failing, but in rising up every time we fail. Ralph Waldo Emerson If you continue to do what you've always done, you'll continue

More information

Measuring longitudinal brain changes in humans and small animal models. Christos Davatzikos

Measuring longitudinal brain changes in humans and small animal models. Christos Davatzikos Measuring longitudinal brain changes in humans and small animal models Christos Davatzikos Section of Biomedical Image Analysis University of Pennsylvania (Radiology) http://www.rad.upenn.edu/sbia Computational

More information

A Preliminary Ray Tracing Approach to Computational Electromagnetics for Reverberation Chambers

A Preliminary Ray Tracing Approach to Computational Electromagnetics for Reverberation Chambers J. Electromagnetic Analysis & Applications, 21, 2, 62-66 doi:1.236/jemaa.21.2861 Published Online August 21 (http://www.scirp.org/journal/jemaa) A Preliminary Ray Tracing Approach to Computational Electromagnetics

More information

Capturing, Modeling, Rendering 3D Structures

Capturing, Modeling, Rendering 3D Structures Computer Vision Approach Capturing, Modeling, Rendering 3D Structures Calculate pixel correspondences and extract geometry Not robust Difficult to acquire illumination effects, e.g. specular highlights

More information

MEG Laboratory Reference Manual for research use

MEG Laboratory Reference Manual for research use MEG Laboratory Reference Manual for research use for Ver. 1R007B Manual version 20040224 Index 1. File... 11 1.1 New... 11 1.2 Open... 11 1.3 Transfer...... 11 1.4 Suspended File List... 12 1.5 Save...

More information